Rh7BG392700

MLP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017013
Physical Location & Seq
Forward (+)
43296648 .. 43297216
569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG392700.1

Sequence Viewer

Length: 468 bp
ATGTCCAATTATGGTAAGGTGGAGGTGGCTATTGAGATCAAGGCTGGTGCTGACGAGTTTTATGATATGGTTGTACACAGACCACACCATGTACCCAACAACAAACTTGATGGTGTTGCAACTAATCAAGCTGACAAGTCCTCATCCGCAAAAGTCGGTTCTATCTCATCCTGGAAGTATTTCCAAGATGGGAAAGCTAAAGTATCCCAGGAGATGATTGAAGCCCTGGAAGGCAAGAAACATTCAGCGACTTGGAAAGTCGTTGAAGGAGAACTTCTTGATGATTACAAGAGCTTCAAGTTCATCATGCAAATTATTACCACTCCAAACCCGAAAGCAACGGTGCATGTGATTTTGGAGTATGAGAAGATGCATGACGATGTTGCAGACCCATATTTTATGCTCCAGGCGGTAACTGATAACATCAAAAGCGTCGATGCTCTACTATTCACTCAGAGCAGGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

155

Amino Acids

17.42

Weight (kDa)

5.84

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 5 - 150 2.6e-33 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 147, 410
AfaI GTAC 2 cut(s) 75, 93
AgsI TTSAA 3 cut(s) 221, 266, 298
AjnI CCWGG 4 cut(s) 170, 207, 225, 405
AluBI AGCT 3 cut(s) 131, 197, 294
AluI AGCT 3 cut(s) 131, 197, 294
AlwNI CAGNNNCTG 1 cut(s) 465
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 462
AvaII GGWCC 1 cut(s) 462
BccI CCATC 2 cut(s) 104, 182
BciT130I CCWGG 4 cut(s) 172, 209, 227, 407
BciVI GTATCC 1 cut(s) 214
BfuI GTATCC 1 cut(s) 214
Bme1390I CCNGG 4 cut(s) 172, 209, 227, 407
Bme18I GGWCC 1 cut(s) 462
BmgT120I GGNCC 1 cut(s) 462
BmrFI CCNGG 4 cut(s) 172, 209, 227, 407
BmsI GCATC 2 cut(s) 360, 427
BpmI CTGGAG 1 cut(s) 389
BsaJI CCNNGG 2 cut(s) 207, 225
BseBI CCWGG 4 cut(s) 172, 209, 227, 407
BseDI CCNNGG 2 cut(s) 207, 225
BseGI GGATG 2 cut(s) 143, 167
BseMII CTCAG 1 cut(s) 467
Bsp1407I TGTACA 1 cut(s) 73
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 2 cut(s) 147, 410
BspCNI CTCAG 1 cut(s) 466
BsrGI TGTACA 1 cut(s) 73
BssECI CCNNGG 2 cut(s) 207, 225
BssMI GATC 1 cut(s) 36
Bst2UI CCWGG 4 cut(s) 172, 209, 227, 407
Bst4CI ACNGT 1 cut(s) 343
BstAUI TGTACA 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 143, 167
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstNI CCWGG 4 cut(s) 172, 209, 227, 407
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 4 cut(s) 170, 207, 225, 405
BsuI GTATCC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 143, 167
CaiI CAGNNNCTG 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 462
CseI GACGC 1 cut(s) 421
Csp6I GTAC 2 cut(s) 74, 92
CviAII CATG 4 cut(s) 89, 307, 347, 374
CviJI RGCY 6 cut(s) 29, 44, 131, 197, 224, 294
CviKI_1 RGCY 6 cut(s) 29, 44, 131, 197, 224, 294
CviQI GTAC 2 cut(s) 74, 92
DdeI CTNAG 1 cut(s) 453
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 462
EcoO109I RGGNCCY 1 cut(s) 462
EcoRII CCWGG 4 cut(s) 170, 207, 225, 405
EcoT22I ATGCAT 1 cut(s) 375
FaeI CATG 4 cut(s) 92, 310, 350, 377
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 4 cut(s) 88, 306, 346, 373
FokI GGATG 2 cut(s) 130, 154
GsuI CTGGAG 1 cut(s) 389
HgaI GACGC 1 cut(s) 421
Hin1II CATG 4 cut(s) 92, 310, 350, 377
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 456
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 2 cut(s) 224, 260
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 5 cut(s) 119, 310, 346, 373, 386
HpyF3I CTNAG 1 cut(s) 453
Hsp92II CATG 4 cut(s) 92, 310, 350, 377
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 408
LweI GCATC 2 cut(s) 360, 427
MaeIII GTNAC 1 cut(s) 412
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 379
MluCI AATT 2 cut(s) 7, 312
MnlI CCTC 2 cut(s) 16, 151
Mph1103I ATGCAT 1 cut(s) 375
MroXI GAANNNNTTC 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 378
MspR9I CCNGG 4 cut(s) 172, 209, 227, 407
MvaI CCWGG 4 cut(s) 172, 209, 227, 407
NdeII GATC 1 cut(s) 36
NlaIII CATG 4 cut(s) 92, 310, 350, 377
NsiI ATGCAT 1 cut(s) 375
NspI RCATGY 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 179
PfoI TCCNGGA 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 462
Psp5II RGGWCCY 1 cut(s) 462
Psp6I CCWGG 4 cut(s) 170, 207, 225, 405
PspGI CCWGG 4 cut(s) 170, 207, 225, 405
PspPI GGNCC 1 cut(s) 462
PspPPI RGGWCCY 1 cut(s) 462
PstNI CAGNNNCTG 1 cut(s) 465
RsaI GTAC 2 cut(s) 75, 93
RsaNI GTAC 2 cut(s) 74, 92
RseI CAYNNNNRTG 1 cut(s) 378
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 462
ScrFI CCNGG 4 cut(s) 172, 209, 227, 407
SetI ASST 6 cut(s) 21, 27, 133, 199, 296, 467
SfaNI GCATC 2 cut(s) 360, 427
SinI GGWCC 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 378
Sse9I AATT 2 cut(s) 7, 312
SsiI CCGC 2 cut(s) 147, 410
StyD4I CCNGG 4 cut(s) 170, 207, 225, 405
TaaI ACNGT 1 cut(s) 343
TaqI TCGA 1 cut(s) 435
TasI AATT 2 cut(s) 7, 312
TatI WGTACW 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 462
XceI RCATGY 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.