Rroxscaffold_3G00237360

Mitotic-spindle organizing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008654
Physical Location & Seq
Forward (+)
24945863 .. 24946081
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237360.1

Sequence Viewer

Length: 219 bp
ATGGATGCGGATGCTGCAAAAACAGCCCGGGAGTCTCTGGACCTAGCATTTCAGATGTCCAACATTCTTGACACAGGGCTTGATCGTCACACCCTCTCCATCCTTATTGCACTCTGTGATTTGGGTCTCAACCCTGAGGCATTGGCTGCTGTTGTCAAGGAGCTCCGAAATGACCTCGGCCCACTTACACCACAGGATGCTGCTCGTCATGTTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005694 GO:0005737 GO:0005815 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006338 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008104 GO:0008150 GO:0008274 GO:0009524 GO:0009574 GO:0009987 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0019867 GO:0022402 GO:0022607 GO:0031021 GO:0031055 GO:0031090 GO:0031109 GO:0031497 GO:0031503 GO:0031965 GO:0031967 GO:0031968 GO:0031975 GO:0032153 GO:0032155 GO:0032991 GO:0033036 GO:0033566 GO:0034080 GO:0034508 GO:0034613 GO:0034622 GO:0034629 GO:0034724 GO:0034728 GO:0042175 GO:0042393 GO:0043015 GO:0043044 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043486 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0051179 GO:0051225 GO:0051258 GO:0051276 GO:0051415 GO:0051418 GO:0051641 GO:0061641 GO:0065003 GO:0065004 GO:0070727 GO:0070925 GO:0071103 GO:0071824 GO:0071840 GO:0072686 GO:0090307 GO:0097435 GO:0098588 GO:0098687 GO:0098805 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOZART1

Protein Analysis

72

Amino Acids

7.71

Weight (kDa)

4.6

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOZART1 PF12554 10 - 56 5.1e-22 Mitotic-spindle organizing gamma-tubulin ring associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AdeI CACNNNGTG 1 cut(s) 116
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 2 cut(s) 39, 131
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 3 cut(s) 14, 146, 200
AspS9I GGNCC 2 cut(s) 40, 179
AsuC2I CCSGG 2 cut(s) 28, 29
AvaI CYCGRG 1 cut(s) 27
AvaII GGWCC 1 cut(s) 40
AxyI CCTNAGG 1 cut(s) 135
BanII GRGCYC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 2 cut(s) 133, 187
BccI CCATC 1 cut(s) 107
BcnI CCSGG 2 cut(s) 28, 29
BcoDI GTCTC 2 cut(s) 39, 131
BfaI CTAG 1 cut(s) 44
BisI GCNGC 3 cut(s) 15, 147, 201
BlsI GCNGC 3 cut(s) 16, 148, 202
Bme1390I CCNGG 2 cut(s) 28, 29
Bme18I GGWCC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 40, 179
BmrFI CCNGG 2 cut(s) 28, 29
BmsI GCATC 1 cut(s) 187
BpuMI CCSGG 2 cut(s) 28, 29
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 27, 175
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bse21I CCTNAGG 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 27, 175
BseGI GGATG 4 cut(s) 10, 16, 99, 202
BseMII CTCAG 1 cut(s) 126
BseXI GCAGC 2 cut(s) 133, 187
BshFI GGCC 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 27
BsiSI CCGG 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 39, 131
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 27, 175
BssMI GATC 1 cut(s) 82
BstAPI GCANNNNNTGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 4 cut(s) 10, 16, 99, 202
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 2 cut(s) 39, 131
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 14, 23, 146
BstSCI CCNGG 2 cut(s) 26, 27
BstV1I GCAGC 2 cut(s) 133, 187
Bsu36I CCTNAGG 1 cut(s) 135
BsuRI GGCC 1 cut(s) 180
BtsCI GGATG 4 cut(s) 10, 16, 99, 202
Cfr13I GGNCC 2 cut(s) 40, 179
Cfr9I CCCGGG 1 cut(s) 27
CviAII CATG 1 cut(s) 209
CviJI RGCY 5 cut(s) 26, 79, 146, 163, 180
CviKI_1 RGCY 5 cut(s) 26, 79, 146, 163, 180
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DraIII CACNNNGTG 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 40
Eco53kI GAGCTC 1 cut(s) 163
Eco81I CCTNAGG 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 27
EcoICRI GAGCTC 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 1 cut(s) 212
FaiI YATR 1 cut(s) 210
FatI CATG 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 15, 147, 201
FokI GGATG 4 cut(s) 17, 23, 86, 209
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 15, 147, 201
FspBI CTAG 1 cut(s) 44
GluI GCNGC 3 cut(s) 15, 147, 201
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 28
Hin1II CATG 1 cut(s) 212
HinfI GANTC 1 cut(s) 32
HpaII CCGG 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 54, 167
Hpy188III TCNNGA 2 cut(s) 38, 68
HpyCH4V TGCA 2 cut(s) 17, 110
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 23, 146
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 1 cut(s) 212
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 160, 168
LpnPI CCDG 5 cut(s) 23, 41, 60, 147, 179
Lsp1109I GCAGC 2 cut(s) 133, 187
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 86
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 165
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 3 cut(s) 104, 130, 185
MspI CCGG 1 cut(s) 28
MspR9I CCNGG 2 cut(s) 28, 29
MwoI GCNNNNNNNGC 3 cut(s) 14, 23, 146
NciI CCSGG 2 cut(s) 28, 29
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 212
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 86
PkrI GCNGC 3 cut(s) 16, 148, 202
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 40, 179
SacI GAGCTC 1 cut(s) 165
SatI GCNGC 3 cut(s) 15, 147, 201
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 2 cut(s) 40, 179
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 2 cut(s) 28, 29
SduI GDGCHC 1 cut(s) 165
SetI ASST 3 cut(s) 45, 165, 177
SfaNI GCATC 1 cut(s) 187
SinI GGWCC 1 cut(s) 40
SmaI CCCGGG 1 cut(s) 29
SsiI CCGC 1 cut(s) 8
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 26, 27
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 3 cut(s) 14, 146, 200
Tsp45I GTSAC 1 cut(s) 86
TspGWI ACGGA 1 cut(s) 204
TspMI CCCGGG 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 40
XmaI CCCGGG 1 cut(s) 27
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.