Rroxscaffold_4G00320030

Mitotic-spindle organizing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008654
Physical Location & Seq
Forward (+)
48341230 .. 48341448
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00320030.1

Sequence Viewer

Length: 219 bp
ATGGATGCGGATGCTGCAAAAACAGCTCAGGAGTCCCTAGACCTAGCATTTCAGATGTCCAACATTCTTGACACGGGGCTTTATCGTCACACCCTCTCCATCCTTATTGCACTATGTGATTTGGGTCTCAACGCTGAGGCGTTAGCTGCAGTTGTCAAGGAACTCCAAAATGACCTGGGGCCGCTTACACCACAGGGCACTGCTCCGCATGGACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005640 GO:0005694 GO:0005737 GO:0005815 GO:0005819 GO:0005828 GO:0005856 GO:0005874 GO:0005876 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006338 GO:0006996 GO:0007010 GO:0007017 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0008092 GO:0008104 GO:0008150 GO:0008274 GO:0009524 GO:0009574 GO:0009987 GO:0012505 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0019867 GO:0022402 GO:0022607 GO:0031021 GO:0031055 GO:0031090 GO:0031109 GO:0031497 GO:0031503 GO:0031965 GO:0031967 GO:0031968 GO:0031975 GO:0032153 GO:0032155 GO:0032991 GO:0033036 GO:0033566 GO:0034080 GO:0034508 GO:0034613 GO:0034622 GO:0034629 GO:0034724 GO:0034728 GO:0042175 GO:0042393 GO:0043015 GO:0043044 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043486 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0046785 GO:0048285 GO:0051179 GO:0051225 GO:0051258 GO:0051276 GO:0051415 GO:0051418 GO:0051641 GO:0061641 GO:0065003 GO:0065004 GO:0070727 GO:0070925 GO:0071103 GO:0071824 GO:0071840 GO:0072686 GO:0090307 GO:0097435 GO:0098588 GO:0098687 GO:0098805 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140014 GO:1902850 GO:1903047
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOZART1

Protein Analysis

72

Amino Acids

7.54

Weight (kDa)

4.3

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOZART1 PF12554 10 - 55 4.1e-18 Mitotic-spindle organizing gamma-tubulin ring associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 8, 182, 206
AdeI CACNNNGTG 1 cut(s) 116
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 2 cut(s) 26, 146
AluI AGCT 2 cut(s) 26, 146
Alw26I GTCTC 1 cut(s) 131
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 14, 146
AspS9I GGNCC 2 cut(s) 179, 212
AvaII GGWCC 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 200
BbvCI CCTCAGC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 133
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 2 cut(s) 38, 44
BfmI CTRYAG 1 cut(s) 147
BisI GCNGC 3 cut(s) 15, 147, 182
BlsI GCNGC 3 cut(s) 16, 148, 183
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 179, 212
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 176
Bpu10I CCTNAGC 2 cut(s) 27, 135
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 175
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 3 cut(s) 10, 16, 99
BseMII CTCAG 2 cut(s) 41, 126
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 1 cut(s) 133
BshFI GGCC 1 cut(s) 181
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 1 cut(s) 181
Bso31I GGTCTC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 200
BspACI CCGC 3 cut(s) 8, 182, 206
BspANI GGCC 1 cut(s) 181
BspCNI CTCAG 2 cut(s) 40, 127
BspLI GGNNCC 1 cut(s) 180
BspMAI CTGCAG 1 cut(s) 151
BspTNI GGTCTC 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 27, 135
BstF5I GGATG 3 cut(s) 10, 16, 99
BstMAI GTCTC 1 cut(s) 131
BstMWI GCNNNNNNNGC 3 cut(s) 14, 23, 146
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 181
BtsCI GGATG 3 cut(s) 10, 16, 99
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 198
Cfr13I GGNCC 2 cut(s) 179, 212
CviAII CATG 2 cut(s) 209, 216
CviJI RGCY 4 cut(s) 26, 79, 146, 181
CviKI_1 RGCY 4 cut(s) 26, 79, 146, 181
DdeI CTNAG 2 cut(s) 27, 135
DraIII CACNNNGTG 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 174
FaeI CATG 2 cut(s) 212, 219
FaiI YATR 3 cut(s) 115, 210, 217
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 208, 215
Fnu4HI GCNGC 3 cut(s) 15, 147, 182
FokI GGATG 3 cut(s) 17, 23, 86
Fsp4HI GCNGC 3 cut(s) 15, 147, 182
FspBI CTAG 2 cut(s) 38, 44
GluI GCNGC 3 cut(s) 15, 147, 182
HaeIII GGCC 1 cut(s) 181
Hin1II CATG 2 cut(s) 212, 219
HinfI GANTC 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 29, 68
HpyCH4V TGCA 3 cut(s) 17, 110, 149
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 23, 146
HpyF3I CTNAG 2 cut(s) 27, 135
Hsp92II CATG 2 cut(s) 212, 219
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 4 cut(s) 14, 161, 179, 188
Lsp1109I GCAGC 1 cut(s) 133
MaeI CTAG 2 cut(s) 38, 44
MaeIII GTNAC 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 200
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 2 cut(s) 104, 130
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 3 cut(s) 14, 23, 146
NlaIII CATG 2 cut(s) 212, 219
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 86
PkrI GCNGC 3 cut(s) 16, 148, 183
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 2 cut(s) 179, 212
PstI CTGCAG 1 cut(s) 151
SatI GCNGC 3 cut(s) 15, 147, 182
Sau96I GGNCC 2 cut(s) 179, 212
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 200
SetI ASST 4 cut(s) 28, 45, 148, 177
SfcI CTRYAG 1 cut(s) 147
SinI GGWCC 1 cut(s) 212
SsiI CCGC 3 cut(s) 8, 182, 206
SspMI CTAG 2 cut(s) 38, 44
StyD4I CCNGG 1 cut(s) 174
TauI GCSGC 1 cut(s) 184
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 2 cut(s) 14, 146
Tsp45I GTSAC 1 cut(s) 86
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 212
XspI CTAG 2 cut(s) 38, 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.