Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004902

Physical Location & Seq

Genomic Coordinates Reverse (-)

54323438 .. 54327705

Gene Structure 4268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2415 bp

ATGGCTTCGAATGGTTCAGCAGGACATACATGTCCGCCTCCGATGAAGGCGACATCAAATGGTGTATTCCAGGGTGATGATCCTCTTCATTTTGCACTGCCTCTTGCTATTTTGCAGATATGTATAGTAGTTGCTGTCACTCGCGGTCTTGCCTATCTTCTGAGGCCACTAAGACAGCCGCGAGTCGTTGCTGAGATTATTGGAGGAGTACTACTTGGTCCATCAGCCCTAGGACGAAACAAAAGTTATCTCCAGGCAATATTTCCACCAAAGAGTATCACAGTGTTAGACACCTTAGCAAACCTTGGTCTCTTATTCTTTCTATTCTTGGCAGGCCTAGAAATAGATCCTAAAGCCATTCGCCAGACTGGAAAAAAAGCCCTTGCCATTGCCATAGTAGGAATCAGTCTCCCATTTGCATTAGGAATTGGTTCATCTTTTGTCCTCCGAGCAACCATATCCAAAGGGGTAGATTTTATTGCCTTTCTTGTGTTCATGGGTGTGGCCCTTTCTATAACTGCTTTCCCTGTTTTAGCACGTATTCTGGCCGAGCTGAAACTTTTGACCACTGAAATTGGAAGATTGGCTATGTCGGCTGCAGCAGTTAATGATGTGGCCGCCTGGGTTTTGCTTGCTCTTGCCATTTCCCTATCCGGCAATAACCAATCTCCCCTTGTTTCATTGTGGGTCTTATTGTCTGGATTTGTCTTTGTCATTTGTGCAATTCTAGTTGTACCCCAAATCTTCAAATGGATGGCTCAACGGTGTCATGAAGGTGAACCCATTGATGAGATATACGTGTGCGCTACACTTACTGCTGTTCTGGCAGCTGGGTTTATAACTGATACAATTGGAATTCACGCCATGTTTGGTGCTTTTGTGATTGGAGTTCTTGTTCCAAAGGAAGGGCCATTTGCTGGTAGTCTTGTGGAAAAAGTAGAAGATCTTGTATCTGGTCTCTTTCTTCCATTGTACTTCGTCTCAAGTGGACTGAAGACCAATGTAGCCACAATTCAAGGAGTTCAGTCTTGGGGTCTATTAGTTCTGGTCATATTTACTGCCTGTTTTGGGAAGATTTTCGGGACTGTTATGGTGTCTCTTTTATGCAAGGTGCCTATCCGGGAGGCTTTAGCTCTTGGGTTCCTAATGAACACTAAAGGGTTGGTGGAACTCATTGTCCTCAACATTGGCAAAGATAGAAAGGTTTTGAATGACCAGACTTTTGCCATTATGGTTCTAATGGCTCTGTTTACTACTTTCATCACCACACCTCTTGTCACTGCTGTGTATAAGCCAGCAAAAAGAGCCAGAATGGCTGATTACAAGTACAAAACAATTGAAAGGAAGAATACGAACTCCCAGCTGAGGATCTTGTCCTGTTTTCATAGTGCCAGAAACATTCCATCTATTATAAATCTACTTGAGGCCTCACGAGGTACAAAGAAGCGGGAAGGCCTTTGTGTTTATGCAATGCACCTGAAGGAGCTCTCTGAGAGGTCATCAGCTATACTAATGGTACACAAGGCAAGAAGGAATGGGTTACCCTTCTGGAATAAGGGACAGCGATCAAATTCTGACAATGTTGTTGTGGCATTCGAGGCATACCAACAATTAAGCCGGGTGTCCATCAGGCCAATGACTGAAATCTCTTCAGTTTCTAACATGCATGAGGACATTTGTGCCACCGCTGAGAGCAAAAGAGCTGCCATCATTATTCTTCCATTCCATAAGCACCAGAGGCTAGATGGTACATTAGAGACTACCCGAAATGACTTCCACGGGGTTAACAAGAGAGTTCTTGAGCATGCACCATGCTCAGTTGGAATTCTAGTCGACCGCGGGCTTGGTGGAGCTACGCATATTGCTGCAAGTAATGTTTCTTATTTCATTACAGTTCTTTACTTTGGGGGCCGTGATGACTGTGAAGCCCTTGCCTATGGGGCTCGCATGGCCGAGCACCCTGGTATCCGTTTAGCGGTCATTCGCTTCTTAGTGGAACCTGAGATTGTTGGGGAGATATCCACAATTAATATTGATCACAATTCTGGCAGCAAAGTGGGGTCAGTAGATGAGGAGTTCCTCGCTGAATTCAAGCATACAATTGCCGAGGATAACTCAATCACATACGAAGAGAAGGTAGTCAAAAATGAGGCACAAACCGTTGGTGTGATTCGTGAGATAGGCCGATGCAATCTGTTTCTGGTCGGGCGAAGTCCTGGTGGTGAAGTAGCCTTGGCCCTAAATAGGAGGAGTGAGTGCCCGGAATTGGGGCCTGTGGGAAGCTTGTTGATTTCGCCAGATTTCCCTACACAAGCATCAGTGTTGGTAGTGCAAGGGTACAACGGTCAGGTACCGTTGAATTTGGCCTCGGAGATGGAGGAAGTGTCACCTGATGACGATATAGAATCGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0031410 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

804

Amino Acids

86.95

Weight (kDa)

8.28

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	47 - 426	7.5e-68	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	484 - 625	1.7e-48	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	629 - 782	3.4e-29	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41610 AT5G41610 AT5G41610
fragaria_vesca	FvH4_5g03730 FvH4_5g03730 FvH4_5g03730 FvH4_5g03730
malus_domestica	MD06G1096700.v1.1 MD14G1117100.v1.1
prunus_persica	Prupe.5G111600_v2.0.a1 Prupe.5G111600_v2.0.a1 Prupe.5G111600_v2.0.a1 Prupe.5G111600_v2.0.a1 Prupe.5G111600_v2.0.a1 Prupe.5G111600_v2.0.a1 Prupe.5G111600_v2.0.a1
pyrus_communis	pycom06g09300
rosa_chinensis	RchiOBHm_Chr7g0195981
rosa_laevigata	RLG00000004077
rosa_multiflora	Rmu_ssc0000453.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259970
rosa_rugosa	Rorug07G0028300 Rorug07G0028400 Rorug07G0028500 Rorug07G0028600
rosa_samantha	Rh7AG155300 Rh7BG157200 Rh7CG160700 Rh7DG156300
rosa_wichuraiana	Rw7G013280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	839, 1412
AasI	GACNNNNNNGTC	1 cut(s)	30
Acc65I	GGTACC	1 cut(s)	2350
AccB1I	GGYRCC	2 cut(s)	1111, 2350
AccB7I	CCANNNNNTGG	1 cut(s)	917
AccI	GTMKAC	1 cut(s)	1833
AccII	CGCG	3 cut(s)	144, 181, 1839
AciI	CCGC	9 cut(s)	35, 144, 179, 618, 1447, 1686, 1837, 1839, 1976
AclWI	GGATC	3 cut(s)	74, 341, 1376
AcoI	YGGCCR	3 cut(s)	546, 615, 1950
AcsI	RAATTY	5 cut(s)	855, 1570, 1824, 2087, 2359
AcuI	CTGAAG	3 cut(s)	1013, 1499, 1635
AfaI	GTAC	9 cut(s)	210, 735, 974, 1328, 1438, 1518, 1750, 2339, 2352
AfiI	CCNNNNNNNGG	8 cut(s)	905, 917, 1068, 1365, 1975, 2244, 2266, 2267
AflIII	ACRYGT	2 cut(s)	29, 798
AgsI	TTSAA	6 cut(s)	748, 1016, 1210, 1340, 2092, 2359
AjnI	CCWGG	5 cut(s)	69, 252, 620, 1960, 2215
AleI	CACNNNNGTG	1 cut(s)	1283
AloI	GAACNNNNNNTCC	4 cut(s)	879, 911, 1161, 1193
AluBI	AGCT	9 cut(s)	553, 830, 1133, 1363, 1486, 1505, 1703, 1853, 2283
AluI	AGCT	9 cut(s)	553, 830, 1133, 1363, 1486, 1505, 1703, 1853, 2283
Alw21I	GWGCWC	2 cut(s)	1488, 1959
Alw26I	GTCTC	6 cut(s)	314, 413, 962, 985, 1101, 1751
AlwI	GGATC	3 cut(s)	74, 341, 1376
ApeKI	GCWGC	6 cut(s)	596, 599, 827, 1703, 1865, 2049
ApoI	RAATTY	5 cut(s)	855, 1570, 1824, 2087, 2359
ArsI	GACNNNNNNTTYG	2 cut(s)	1205, 1237
AseI	ATTAAT	1 cut(s)	2028
Asp700I	GAANNNNTTC	2 cut(s)	430, 1076
Asp718I	GGTACC	1 cut(s)	2350
AspA2I	CCTAGG	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	806
AspS9I	GGNCC	6 cut(s)	218, 505, 908, 1909, 2236, 2270
AsuC2I	CCSGG	3 cut(s)	1121, 1619, 2261
AsuHPI	GGTGA	5 cut(s)	86, 788, 1255, 2234, 2379
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	218
AvrII	CCTAGG	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	2261
BaeI	ACNNNNGTAYC	4 cut(s)	1948, 1981, 2329, 2362
BanI	GGYRCC	2 cut(s)	1111, 2350
BanII	GRGCYC	2 cut(s)	1488, 1945
BauI	CACGAG	1 cut(s)	1431
BbsI	GAAGAC	1 cut(s)	1001
Bbv12I	GWGCWC	2 cut(s)	1488, 1959
BbvCI	CCTCAGC	1 cut(s)	1364
BbvI	GCAGC	6 cut(s)	583, 611, 839, 1690, 1852, 2061
BccI	CCATC	7 cut(s)	229, 748, 1411, 1634, 1715, 1739, 2368
BceAI	ACGGC	1 cut(s)	1896
BciT130I	CCWGG	5 cut(s)	71, 254, 622, 1962, 2217
BciVI	GTATCC	1 cut(s)	1976
BclI	TGATCA	1 cut(s)	2035
BcnI	CCSGG	3 cut(s)	1121, 1619, 2261
BcoDI	GTCTC	6 cut(s)	314, 413, 962, 985, 1101, 1751
BfaI	CTAG	6 cut(s)	230, 338, 728, 1742, 1829, 2413
BfmI	CTRYAG	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	1976
BglI	GCCNNNNNGGC	2 cut(s)	1313, 1940
BglII	AGATCT	1 cut(s)	943
BisI	GCNGC	8 cut(s)	179, 597, 600, 618, 828, 1704, 1866, 2050
BlnI	CCTAGG	1 cut(s)	229
BlsI	GCNGC	8 cut(s)	180, 598, 601, 619, 829, 1705, 1867, 2051
BmcAI	AGTACT	1 cut(s)	210
Bme1390I	CCNGG	8 cut(s)	71, 254, 622, 1121, 1619, 1962, 2217, 2261
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	6 cut(s)	218, 505, 908, 1909, 2236, 2270
BmiI	GGNNCC	6 cut(s)	1113, 1142, 1910, 1998, 2271, 2352
BmrFI	CCNGG	8 cut(s)	71, 254, 622, 1121, 1619, 1962, 2217, 2261
BmsI	GCATC	2 cut(s)	2177, 2324
BpiI	GAAGAC	1 cut(s)	1001
BplI	GAGNNNNNCTC	2 cut(s)	2099, 2131
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	2 cut(s)	295, 1364
Bpu14I	TTCGAA	1 cut(s)	8
BpuEI	CTTGAG	3 cut(s)	967, 1442, 1820
BpuMI	CCSGG	3 cut(s)	1121, 1619, 2261
BsaAI	YACGTR	2 cut(s)	539, 799
BsaI	GGTCTC	2 cut(s)	314, 962
BsaXI	ACNNNNNCTCC	4 cut(s)	879, 909, 2369, 2399
Bsc4I	CCNNNNNNNGG	8 cut(s)	905, 917, 1068, 1365, 1975, 2244, 2266, 2267
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	2 cut(s)	387, 1476
BseBI	CCWGG	5 cut(s)	71, 254, 622, 1962, 2217
BseGI	GGATG	1 cut(s)	759
BseLI	CCNNNNNNNGG	8 cut(s)	905, 917, 1068, 1365, 1975, 2244, 2266, 2267
BseMI	GCAATG	2 cut(s)	387, 1476
BseMII	CTCAG	7 cut(s)	152, 183, 1355, 1482, 1680, 1830, 1992
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	3 cut(s)	219, 2087, 2263
BseSI	GKGCMC	1 cut(s)	2261
BseXI	GCAGC	6 cut(s)	583, 611, 839, 1690, 1852, 2061
BseYI	CCCAGC	2 cut(s)	830, 1359
Bsh1236I	CGCG	3 cut(s)	144, 181, 1839
Bsh1285I	CGRYCG	1 cut(s)	1837
BshNI	GGYRCC	2 cut(s)	1111, 2350
BsiEI	CGRYCG	1 cut(s)	1837
BsiHKAI	GWGCWC	2 cut(s)	1488, 1959
BsiSI	CCGG	4 cut(s)	654, 1120, 1618, 2261
BslFI	GGGAC	2 cut(s)	1096, 1572
BslI	CCNNNNNNNGG	8 cut(s)	905, 917, 1068, 1365, 1975, 2244, 2266, 2267
BsmAI	GTCTC	6 cut(s)	314, 413, 962, 985, 1101, 1751
BsmBI	CGTCTC	1 cut(s)	985
BsmFI	GGGAC	2 cut(s)	1096, 1572
BsmI	GAATGC	1 cut(s)	1592
Bso31I	GGTCTC	2 cut(s)	314, 962
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	4 cut(s)	1488, 1945, 1959, 2261
Bsp143I	GATC	6 cut(s)	79, 346, 943, 1368, 1565, 2035
BspACI	CCGC	9 cut(s)	35, 144, 179, 618, 1447, 1686, 1837, 1839, 1976
BspCNI	CTCAG	7 cut(s)	153, 184, 1356, 1483, 1681, 1829, 1993
BspFNI	CGCG	3 cut(s)	144, 181, 1839
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	6 cut(s)	1113, 1142, 1910, 1998, 2271, 2352
BspMAI	CTGCAG	1 cut(s)	601
BspPI	GGATC	3 cut(s)	74, 341, 1376
BspT104I	TTCGAA	1 cut(s)	8
BspT107I	GGYRCC	2 cut(s)	1111, 2350
BspTNI	GGTCTC	2 cut(s)	314, 962
BsrDI	GCAATG	2 cut(s)	387, 1476
BsrI	ACTGG	1 cut(s)	373
BssMI	GATC	6 cut(s)	79, 346, 943, 1368, 1565, 2035
BssSI	CACGAG	1 cut(s)	1431
BssT1I	CCWWGG	3 cut(s)	229, 304, 2232
Bst2BI	CACGAG	1 cut(s)	1431
Bst2UI	CCWGG	5 cut(s)	71, 254, 622, 1962, 2217
Bst4CI	ACNGT	8 cut(s)	283, 765, 1087, 1894, 1922, 2161, 2345, 2355
Bst6I	CTCTTC	3 cut(s)	90, 1654, 2124
BstBAI	YACGTR	2 cut(s)	539, 799
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	6 cut(s)	334, 633, 1296, 1806, 1841, 1945
BstDSI	CCRYGG	2 cut(s)	1777, 1837
BstEII	GGTNACC	1 cut(s)	1539
BstF5I	GGATG	1 cut(s)	759
BstFNI	CGCG	3 cut(s)	144, 181, 1839
BstHHI	GCGC	1 cut(s)	806
BstKTI	GATC	6 cut(s)	82, 349, 946, 1371, 1568, 2038
BstMAI	GTCTC	6 cut(s)	314, 413, 962, 985, 1101, 1751
BstMBI	GATC	6 cut(s)	79, 346, 943, 1368, 1565, 2035
BstMCI	CGRYCG	1 cut(s)	1837
BstMWI	GCNNNNNNNGC	8 cut(s)	593, 824, 1304, 1313, 1598, 1738, 1940, 1949
BstNI	CCWGG	5 cut(s)	71, 254, 622, 1962, 2217
BstNSI	RCATGY	3 cut(s)	33, 1666, 1808
BstPI	GGTNACC	1 cut(s)	1539
BstSCI	CCNGG	8 cut(s)	69, 252, 620, 1119, 1617, 1960, 2215, 2259
BstSFI	CTRYAG	1 cut(s)	597
BstSLI	GKGCMC	1 cut(s)	2261
BstUI	CGCG	3 cut(s)	144, 181, 1839
BstV1I	GCAGC	6 cut(s)	583, 611, 839, 1690, 1852, 2061
BstV2I	GAAGAC	1 cut(s)	1001
BstX2I	RGATCY	3 cut(s)	346, 943, 1368
BstYI	RGATCY	3 cut(s)	346, 943, 1368
BsuI	GTATCC	1 cut(s)	1976
BtgI	CCRYGG	2 cut(s)	1777, 1837
BtsCI	GGATG	1 cut(s)	759
BtsI	GCAGTG	2 cut(s)	95, 1278
BtsIMutI	CAGTG	5 cut(s)	95, 288, 567, 1278, 2325
Cac8I	GCNNGC	6 cut(s)	334, 633, 1296, 1806, 1841, 1945
CciI	TCATGA	1 cut(s)	769
CfoI	GCGC	1 cut(s)	806
Cfr13I	GGNCC	6 cut(s)	218, 505, 908, 1909, 2236, 2270
Cfr42I	CCGCGG	1 cut(s)	1840
Csp6I	GTAC	9 cut(s)	209, 734, 973, 1327, 1437, 1517, 1749, 2338, 2351
CspCI	CAANNNNNGTGG	4 cut(s)	556, 591, 1255, 1290
CviAII	CATG	9 cut(s)	30, 496, 770, 865, 1663, 1667, 1805, 1812, 1948
CviQI	GTAC	9 cut(s)	209, 734, 973, 1327, 1437, 1517, 1749, 2338, 2351
DpnI	GATC	6 cut(s)	81, 348, 945, 1370, 1567, 2037
DpnII	GATC	6 cut(s)	79, 346, 943, 1368, 1565, 2035
DrdI	GACNNNNNNGTC	1 cut(s)	30
DseDI	GACNNNNNNGTC	1 cut(s)	30
EaeI	YGGCCR	3 cut(s)	546, 615, 1950
Eam1104I	CTCTTC	3 cut(s)	90, 1654, 2124
EarI	CTCTTC	3 cut(s)	90, 1654, 2124
EciI	GGCGGA	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	1486
Eco130I	CCWWGG	3 cut(s)	229, 304, 2232
Eco147I	AGGCCT	3 cut(s)	336, 1427, 1455
Eco24I	GRGCYC	2 cut(s)	1488, 1945
Eco31I	GGTCTC	2 cut(s)	314, 962
Eco32I	GATATC	1 cut(s)	2019
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	1486
Eco57I	CTGAAG	3 cut(s)	1013, 1499, 1635
Eco91I	GGTNACC	1 cut(s)	1539
EcoICRI	GAGCTC	1 cut(s)	1486
EcoO109I	RGGNCCY	1 cut(s)	2270
EcoO65I	GGTNACC	1 cut(s)	1539
EcoRI	GAATTC	3 cut(s)	855, 1824, 2087
EcoRII	CCWGG	5 cut(s)	69, 252, 620, 1960, 2215
EcoRV	GATATC	1 cut(s)	2019
EcoT14I	CCWWGG	3 cut(s)	229, 304, 2232
EcoT22I	ATGCAT	1 cut(s)	1668
EcoT38I	GRGCYC	2 cut(s)	1488, 1945
ErhI	CCWWGG	3 cut(s)	229, 304, 2232
Esp3I	CGTCTC	1 cut(s)	985
FaeI	CATG	9 cut(s)	33, 499, 773, 868, 1666, 1670, 1808, 1815, 1951
FaqI	GGGAC	2 cut(s)	1096, 1572
FatI	CATG	9 cut(s)	29, 495, 769, 864, 1662, 1666, 1804, 1811, 1947
FauI	CCCGC	2 cut(s)	1440, 1832
FbaI	TGATCA	1 cut(s)	2035
FblI	GTMKAC	1 cut(s)	1833
Fnu4HI	GCNGC	8 cut(s)	179, 597, 600, 618, 828, 1704, 1866, 2050
FokI	GGATG	1 cut(s)	766
FriOI	GRGCYC	2 cut(s)	1488, 1945
Fsp4HI	GCNGC	8 cut(s)	179, 597, 600, 618, 828, 1704, 1866, 2050
FspBI	CTAG	6 cut(s)	230, 338, 728, 1742, 1829, 2413
GlaI	GCGC	1 cut(s)	805
GluI	GCNGC	8 cut(s)	179, 597, 600, 618, 828, 1704, 1866, 2050
GsaI	CCCAGC	2 cut(s)	834, 1363
GsuI	CTGGAG	1 cut(s)	236
HapII	CCGG	4 cut(s)	654, 1120, 1618, 2261
HhaI	GCGC	1 cut(s)	806
Hin1II	CATG	9 cut(s)	33, 499, 773, 868, 1666, 1670, 1808, 1815, 1951
Hin6I	GCGC	1 cut(s)	804
HinP1I	GCGC	1 cut(s)	804
HincII	GTYRAC	2 cut(s)	1786, 1834
HindII	GTYRAC	2 cut(s)	1786, 1834
HindIII	AAGCTT	1 cut(s)	2281
HinfI	GANTC	4 cut(s)	183, 402, 2170, 2405
HpaI	GTTAAC	1 cut(s)	1786
HpaII	CCGG	4 cut(s)	654, 1120, 1618, 2261
HphI	GGTGA	5 cut(s)	86, 788, 1255, 2234, 2379
Hpy166II	GTNNAC	6 cut(s)	779, 989, 1251, 1519, 1786, 1834
Hpy188I	TCNGA	6 cut(s)	42, 162, 449, 1492, 1576, 2371
Hpy188III	TCNNGA	7 cut(s)	699, 770, 1081, 1431, 1549, 1799, 2174
Hpy8I	GTNNAC	6 cut(s)	779, 989, 1251, 1519, 1786, 1834
HpyAV	CCTTC	8 cut(s)	40, 767, 899, 1445, 1474, 1524, 1555, 2128
HpyCH4III	ACNGT	8 cut(s)	283, 765, 1087, 1894, 1922, 2161, 2345, 2355
HpyCH4IV	ACGT	2 cut(s)	538, 798
HpyF10VI	GCNNNNNNNGC	8 cut(s)	593, 824, 1304, 1313, 1598, 1738, 1940, 1949
HpySE526I	ACGT	2 cut(s)	538, 798
Hsp92II	CATG	9 cut(s)	33, 499, 773, 868, 1666, 1670, 1808, 1815, 1951
HspAI	GCGC	1 cut(s)	804
KpnI	GGTACC	1 cut(s)	2354
Ksp22I	TGATCA	1 cut(s)	2035
KspAI	GTTAAC	1 cut(s)	1786
KspI	CCGCGG	1 cut(s)	1840
Kzo9I	GATC	6 cut(s)	79, 346, 943, 1368, 1565, 2035
LmnI	GCTCC	2 cut(s)	1483, 1850
Lsp1109I	GCAGC	6 cut(s)	583, 611, 839, 1690, 1852, 2061
LweI	GCATC	2 cut(s)	2177, 2324
MaeI	CTAG	6 cut(s)	230, 338, 728, 1742, 1829, 2413
MaeII	ACGT	2 cut(s)	538, 798
MaeIII	GTNAC	4 cut(s)	136, 1276, 1539, 2385
MalI	GATC	6 cut(s)	81, 348, 945, 1370, 1567, 2037
MboI	GATC	6 cut(s)	79, 346, 943, 1368, 1565, 2035
MfeI	CAATTG	3 cut(s)	849, 1335, 2100
MflI	RGATCY	3 cut(s)	346, 943, 1368
MhlI	GDGCHC	4 cut(s)	1488, 1945, 1959, 2261
MlyI	GAGTC	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	1801
Mph1103I	ATGCAT	1 cut(s)	1668
MroXI	GAANNNNTTC	2 cut(s)	430, 1076
MseI	TTAA	4 cut(s)	606, 1613, 1785, 2028
MslI	CAYNNNNRTG	3 cut(s)	500, 774, 1283
MspA1I	CMGCKG	4 cut(s)	830, 1363, 1688, 1839
MspI	CCGG	4 cut(s)	654, 1120, 1618, 2261
MspR9I	CCNGG	8 cut(s)	71, 254, 622, 1121, 1619, 1962, 2217, 2261
MunI	CAATTG	3 cut(s)	849, 1335, 2100
Mva1269I	GAATGC	1 cut(s)	1592
MvaI	CCWGG	5 cut(s)	71, 254, 622, 1962, 2217
MvnI	CGCG	3 cut(s)	144, 181, 1839
MwoI	GCNNNNNNNGC	8 cut(s)	593, 824, 1304, 1313, 1598, 1738, 1940, 1949
NciI	CCSGG	3 cut(s)	1121, 1619, 2261
NdeII	GATC	6 cut(s)	79, 346, 943, 1368, 1565, 2035
NlaIII	CATG	9 cut(s)	33, 499, 773, 868, 1666, 1670, 1808, 1815, 1951
NlaIV	GGNNCC	6 cut(s)	1113, 1142, 1910, 1998, 2271, 2352
NmeAIII	GCCGAG	3 cut(s)	574, 1978, 2131
NmuCI	GTSAC	3 cut(s)	136, 1276, 2385
NsiI	ATGCAT	1 cut(s)	1668
NspI	RCATGY	3 cut(s)	33, 1666, 1808
NspV	TTCGAA	1 cut(s)	8
OliI	CACNNNNGTG	1 cut(s)	1283
PaeI	GCATGC	1 cut(s)	1808
PagI	TCATGA	1 cut(s)	769
PceI	AGGCCT	3 cut(s)	336, 1427, 1455
PciI	ACATGT	1 cut(s)	29
PctI	GAATGC	1 cut(s)	1592
PdmI	GAANNNNTTC	2 cut(s)	430, 1076
PfeI	GAWTC	3 cut(s)	402, 2170, 2405
PflMI	CCANNNNNTGG	1 cut(s)	917
PfoI	TCCNGGA	1 cut(s)	1119
PkrI	GCNGC	8 cut(s)	180, 598, 601, 619, 829, 1705, 1867, 2051
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Ppu21I	YACGTR	2 cut(s)	539, 799
PscI	ACATGT	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	2028
PsiI	TTATAA	2 cut(s)	839, 1412
Psp124BI	GAGCTC	1 cut(s)	1488
Psp6I	CCWGG	5 cut(s)	69, 252, 620, 1960, 2215
PspEI	GGTNACC	1 cut(s)	1539
PspFI	CCCAGC	2 cut(s)	830, 1359
PspGI	CCWGG	5 cut(s)	69, 252, 620, 1960, 2215
PspN4I	GGNNCC	6 cut(s)	1113, 1142, 1910, 1998, 2271, 2352
PspPI	GGNCC	6 cut(s)	218, 505, 908, 1909, 2236, 2270
PstI	CTGCAG	1 cut(s)	601
PsuI	RGATCY	3 cut(s)	346, 943, 1368
PvuII	CAGCTG	2 cut(s)	830, 1363
RsaI	GTAC	9 cut(s)	210, 735, 974, 1328, 1438, 1518, 1750, 2339, 2352
RsaNI	GTAC	9 cut(s)	209, 734, 973, 1327, 1437, 1517, 1749, 2338, 2351
RseI	CAYNNNNRTG	3 cut(s)	500, 774, 1283
SacI	GAGCTC	1 cut(s)	1488
SacII	CCGCGG	1 cut(s)	1840
SalI	GTCGAC	1 cut(s)	1832
SaqAI	TTAA	4 cut(s)	606, 1613, 1785, 2028
SatI	GCNGC	8 cut(s)	179, 597, 600, 618, 828, 1704, 1866, 2050
Sau3AI	GATC	6 cut(s)	79, 346, 943, 1368, 1565, 2035
Sau96I	GGNCC	6 cut(s)	218, 505, 908, 1909, 2236, 2270
ScaI	AGTACT	1 cut(s)	210
SchI	GAGTC	1 cut(s)	192
ScrFI	CCNGG	8 cut(s)	71, 254, 622, 1121, 1619, 1962, 2217, 2261
SduI	GDGCHC	4 cut(s)	1488, 1945, 1959, 2261
SfaNI	GCATC	2 cut(s)	2177, 2324
SfcI	CTRYAG	1 cut(s)	597
Sfr303I	CCGCGG	1 cut(s)	1840
SfuI	TTCGAA	1 cut(s)	8
SgrBI	CCGCGG	1 cut(s)	1840
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	3 cut(s)	500, 774, 1283
SmlI	CTYRAG	3 cut(s)	982, 1421, 1799
SmoI	CTYRAG	3 cut(s)	982, 1421, 1799
SphI	GCATGC	1 cut(s)	1808
SseBI	AGGCCT	3 cut(s)	336, 1427, 1455
SsiI	CCGC	9 cut(s)	35, 144, 179, 618, 1447, 1686, 1837, 1839, 1976
SspI	AATATT	2 cut(s)	261, 2032
SspMI	CTAG	6 cut(s)	230, 338, 728, 1742, 1829, 2413
SstI	GAGCTC	1 cut(s)	1488
StuI	AGGCCT	3 cut(s)	336, 1427, 1455
StyD4I	CCNGG	8 cut(s)	69, 252, 620, 1119, 1617, 1960, 2215, 2259
StyI	CCWWGG	3 cut(s)	229, 304, 2232
TaaI	ACNGT	8 cut(s)	283, 765, 1087, 1894, 1922, 2161, 2345, 2355
TaiI	ACGT	2 cut(s)	541, 801
TaqI	TCGA	4 cut(s)	8, 1596, 1833, 2408
TatI	WGTACW	3 cut(s)	208, 972, 1326
TauI	GCSGC	2 cut(s)	181, 620
TfiI	GAWTC	3 cut(s)	402, 2170, 2405
Tru1I	TTAA	4 cut(s)	606, 1613, 1785, 2028
Tru9I	TTAA	4 cut(s)	606, 1613, 1785, 2028
TscAI	CASTG	5 cut(s)	102, 288, 574, 1285, 2325
TseFI	GTSAC	3 cut(s)	136, 1276, 2385
TseI	GCWGC	6 cut(s)	596, 599, 827, 1703, 1865, 2049
Tsp45I	GTSAC	3 cut(s)	136, 1276, 2385
TspGWI	ACGGA	1 cut(s)	1958
TspRI	CASTG	5 cut(s)	102, 288, 574, 1285, 2325
Van91I	CCANNNNNTGG	1 cut(s)	917
VpaK11BI	GGWCC	1 cut(s)	218
VspI	ATTAAT	1 cut(s)	2028
XapI	RAATTY	5 cut(s)	855, 1570, 1824, 2087, 2359
XceI	RCATGY	3 cut(s)	33, 1666, 1808
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1742
XmaJI	CCTAGG	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	1833
XmnI	GAANNNNTTC	2 cut(s)	430, 1076
XspI	CTAG	6 cut(s)	230, 338, 728, 1742, 1829, 2413
ZrmI	AGTACT	1 cut(s)	210
Zsp2I	ATGCAT	1 cut(s)	1668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.