Rorug07G0028300

Cation H( ) antiporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004902
Physical Location & Seq
Reverse (-)
1980149 .. 1981618
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0028300.1

Sequence Viewer

Length: 369 bp
ATGGCTGCCCCGGAACCCTTTGCCGATCCTTTGCAGAAACAAGCCGTTAGCAAAGGCATTAAGAATTTTATGGAGAAAGTCAAGAGAGGAATTGGTGAGGAGAAATACCAGTCCTTCTTGGATGTTGTTGGAGAGTATCAAGATAAGCAGACCAGCATTCACAAGTTACTAGAAGAGATGTCTGTTCTTCTCTGTGTTGAACCTGATCTAGTAAAGGAGTTGAATCACTTGCTACCAGATGGCATTTCAAAGCTAGAGATTGAGAGGAAGGTGCCCAAACCCAAAAGCAGGTGGCTTTCCGGTCTTCGCTATGTATGTGTGGGTGGATTAGGGCTTACCCTGGGCATCTGGGCTCATCTTCTGTTCTAA

Protein Analysis

122

Amino Acids

13.76

Weight (kDa)

7.76

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAH PF02671 34 - 78 2.8e-07 Paired amphipathic helix repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 279
Acc36I ACCTGC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 271
AclWI GGATC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 3 cut(s) 200, 223, 249
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
AlwI GGATC 1 cut(s) 20
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 64
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 276
BanI GGYRCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 296
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 341
BcnI CCSGG 1 cut(s) 11
BfaI CTAG 3 cut(s) 170, 209, 254
BfuAI ACCTGC 1 cut(s) 279
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 11, 341
BmiI GGNNCC 2 cut(s) 15, 273
BmrFI CCNGG 2 cut(s) 11, 341
BmsI GCATC 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 11
BsaJI CCNNGG 3 cut(s) 9, 339, 340
BsaWI WCCGGW 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 3 cut(s) 9, 339, 340
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 109
BseRI GAGGAG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 271
BsiSI CCGG 2 cut(s) 11, 300
BslI CCNNNNNNNGG 1 cut(s) 288
BsmI GAATGC 1 cut(s) 156
Bsp1286I GDGCHC 2 cut(s) 276, 355
Bsp143I GATC 2 cut(s) 25, 205
BspLI GGNNCC 2 cut(s) 15, 273
BspMI ACCTGC 1 cut(s) 279
BspPI GGATC 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 271
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 3 cut(s) 9, 339, 340
BssMI GATC 2 cut(s) 25, 205
Bst2UI CCWGG 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 168
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 2 cut(s) 28, 208
BstMBI GATC 2 cut(s) 25, 205
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 2 cut(s) 9, 339
BstSLI GKGCMC 1 cut(s) 276
BstV2I GAAGAC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 127
BveI ACCTGC 1 cut(s) 279
CviJI RGCY 6 cut(s) 5, 44, 253, 295, 334, 353
CviKI_1 RGCY 6 cut(s) 5, 44, 253, 295, 334, 353
DpnI GATC 2 cut(s) 27, 207
DpnII GATC 2 cut(s) 25, 205
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 355
FaiI YATR 3 cut(s) 71, 312, 316
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 170, 209, 254
GluI GCNGC 1 cut(s) 6
HapII CCGG 2 cut(s) 11, 300
HinfI GANTC 1 cut(s) 223
HpaII CCGG 2 cut(s) 11, 300
HphI GGTGA 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 82, 140
HpyAV CCTTC 2 cut(s) 124, 262
HpyCH4V TGCA 1 cut(s) 34
Kzo9I GATC 2 cut(s) 25, 205
LweI GCATC 1 cut(s) 354
MaeI CTAG 3 cut(s) 170, 209, 254
MaeIII GTNAC 1 cut(s) 165
MalI GATC 2 cut(s) 27, 207
MboI GATC 2 cut(s) 25, 205
MboII GAAGA 4 cut(s) 179, 185, 296, 350
MhlI GDGCHC 2 cut(s) 276, 355
MluCI AATT 2 cut(s) 64, 90
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 3 cut(s) 80, 91, 258
MseI TTAA 1 cut(s) 60
MspI CCGG 2 cut(s) 11, 300
MspR9I CCNGG 2 cut(s) 11, 341
Mva1269I GAATGC 1 cut(s) 156
MvaI CCWGG 1 cut(s) 341
NciI CCSGG 1 cut(s) 11
NdeII GATC 2 cut(s) 25, 205
NlaIV GGNNCC 2 cut(s) 15, 273
PaqCI CACCTGC 1 cut(s) 279
PasI CCCWGGG 1 cut(s) 340
PctI GAATGC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 15, 273
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 25, 205
ScrFI CCNGG 2 cut(s) 11, 341
SduI GDGCHC 2 cut(s) 276, 355
SetI ASST 4 cut(s) 205, 255, 273, 293
SfaNI GCATC 1 cut(s) 354
Sse9I AATT 2 cut(s) 64, 90
SspMI CTAG 3 cut(s) 170, 209, 254
StyD4I CCNGG 2 cut(s) 9, 339
TasI AATT 2 cut(s) 64, 90
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TseI GCWGC 1 cut(s) 5
XapI RAATTY 1 cut(s) 64
XspI CTAG 3 cut(s) 170, 209, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.