Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004902

Physical Location & Seq

Genomic Coordinates Forward (+)

13236140 .. 13240821

Gene Structure 4682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG160700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGCTAATTGTAGTTCATCTGATTTTGAATACATTTCTGGTTTGGCAGGGAGGAGTACTACTTGGTCCATCAGCTCTAGGACGAAACAAAACTTATCTCCAGGCAATATTTCCACCAAAGAGTATCACGGTGTTAGACACCTTAGCAAACCTTGGTCTCCTGTTCTTTCTATTCTTGGCTGGCCTAGAAATAGATCCTAAAGCCATTCGCCAGACTGGAAAAAAAGCCCTTGCCATTGCCACAGTAGGAATCAGTCTCCCATTTGCATTAGGAATCGGTTCATCTTTTGTCCTCCGAGCAACCATATCCAAAGGGGTAGATTTTACTGCCTTTCTTGTGTTCATGGGTGTGGCCCTTTCTATAACTGCTTTCCCTGTTTTAGCACGTATTCTGGCCGAGCTGAAACTTTTGACCACTGAAATTGGAAGATTGGCTATGTCGGCTGCAGCAGTTAATGATGTGGCAGCCTGGGTTCTGCTTGCTCTTGCCATTGCCCTATCCGGCAATAACCAATCTCCCCTTGTTTCATTGTGGGTCTTATTGTCTGGATTTGTCTTTGTCATTTGTGCTATTCTAGTTGTACCCCCAATCTTCAAATGGATGGCTCAACGGTGTCATGAAGGTGAACCCATTGATGAGATCTACGTGTGCGCTACACTTACTGCTGTTCTGGCAGCTGGGTTTATAACTGATACAATTGGAATTCACGCCATGTTTGGTGCTTTTGTGATTGGAGTTCTTGTTCCGAAGGAGGGGCCATTTGCAGGTAGTCTTGTGGAAAAAGTAGAAGATCTTGTGTCTGGTCTCTTTCTTCCATTGTACTTTGTCTCAAGTGGACTGAAGACCAATGTAGCCACAATTCAGGGAGTTCAGTCTTGGGGTCTATTAGTTTTGGTCATATTTACTGCCTGTTTTGGGAAGATTTTCGGGACTGTTATGGTGTCTCTTTTATGCAAGGTGCCTGTCCGGGAGGCTTTAGCTCTTGGGTTCCTAATGAACACTAAAGGGTTGGTGGAACTCATTGTCCTCAACATTGGCAAAGATAGAAAGGTTTTGAATGACCAGACTTTTGCCATTATGGTTCTAATGGCTCTGTTTACTACTTTCATCACCACACCTCTTGTCACTGCTGTGTATAAGCCAGCAAAAAGAGCCAGAATGGCTGATTACAAGTATAAAACAATTGAAAGGAAGAATACGAACTCCCAGTTAAGGATCTTGTCCTGTTTTCATAGTGCCAGAAACATTCCATCTATTATAAATCTGCTTGAGGCCTCGAGAGGCACAAAGAAGCGGGAAGGCCTTTGTGTTTATGCAATGCACCTGAAGGAGCTCTCTGAGAGGTCATCGGCTATACTAATGGTACACAAGGCAAGAAGGAATGGGTTACCCTTCTGGAACAAGGGACAGCGATCAAATTCTGACAATGTTGTTGTGGCATTCGAGGCATACCAACAATTAAGCCGGGTGTCCATCAGGCCAATGACTGAAATCTCTTCAGTTTCTAACATGCACGAGGACATTTGTGCCACTGCTGAGAGCAAAAGAGCTGCAATCATAATTCTTCCATTCCATAAGCACCAGAGGCTAGATGGTACATTAGAGACTACCCGAAATGAATTCCGTGGGGTTAACAAGAGAGTTCTTGAGCATGCACCATGCTCAGTTGGAATTCTAGTCGACCGCGGGCTTGGTGGAGCTACGCATATTGCTGCAAGTAATGTTTCTTATTTCATTACAGTTCTTTACTTTGGGGGCCGTGATGACCGTGAAGCCCTTGCCTATGGGGCTCGCATGGCCGAGCACCCTGGTATCCGTTTAGTGGTCATTCGCTTCTTAGTGGAACCTGAGATTGTTGGGGAGATATCCACAATTAATATTGATCACAATTCTGGCAGCAAAGTGGGGTCAGTAGATGAGGAGTTCCTCGCTGAATTCAAGCATACAATTGCCAAGGATAACTCAATCACATACGAAGAGAAGGTAGTCAGAAATGAGGCACAAACCGTTGGTGTGATTCGTGAGATAGGCCGATGCAATCTGTTTCTGGTCGGGCGAAGTCCTGGTGGTGAAGTAGCCTTGGCCCTAAATAGGAGGAGTGAGTGCCCGGAATTGGGGCCTGTGGGAAGCTTGTTGATTTCGCCAGATTTCCCTACACAAGCATCAGTGTTGGTAGTGCAACAGTACAACGGTCAGGTACCGTTGAATTTGGCCTCGGAGATGGAGGAAGTGTCACCTGATGACGATACAGAATCGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0031410 GO:0031982 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0097708 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

753

Amino Acids

81.91

Weight (kDa)

8.62

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	18 - 375	7e-63	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	433 - 574	1.9e-47	Plant cation/H(+) antiporter domain
CHX17_C	PF23259	578 - 731	2.1e-31	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004902)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41610 AT5G41610 AT5G41610
fragaria_vesca	FvH4_5g03730 FvH4_5g03730 FvH4_5g03730 FvH4_5g03730
malus_domestica	MD06G1096700.v1.1 MD14G1117100.v1.1
prunus_persica	Prupe.5G111600_v2.0.a1 Prupe.5G111600_v2.0.a1 Prupe.5G111600_v2.0.a1 Prupe.5G111600_v2.0.a1 Prupe.5G111600_v2.0.a1 Prupe.5G111600_v2.0.a1 Prupe.5G111600_v2.0.a1
pyrus_communis	pycom06g09300
rosa_chinensis	RchiOBHm_Chr7g0195981
rosa_laevigata	RLG00000004077
rosa_multiflora	Rmu_ssc0000453.1_g000006
rosa_roxburghii	Rroxscaffold_3G00259970
rosa_rugosa	Rorug07G0028300 Rorug07G0028400 Rorug07G0028500 Rorug07G0028600
rosa_samantha	Rh7AG155300 Rh7BG157200 Rh7CG160700 Rh7DG156300
rosa_wichuraiana	Rw7G013280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	686, 1259
Acc36I	ACCTGC	1 cut(s)	755
Acc65I	GGTACC	1 cut(s)	2197
AccB1I	GGYRCC	2 cut(s)	958, 2197
AccI	GTMKAC	1 cut(s)	1680
AccII	CGCG	1 cut(s)	1686
AciI	CCGC	3 cut(s)	1294, 1684, 1686
AclWI	GGATC	2 cut(s)	188, 1223
AcoI	YGGCCR	2 cut(s)	393, 1797
AcsI	RAATTY	6 cut(s)	702, 1417, 1619, 1671, 1934, 2206
AcuI	CTGAAG	3 cut(s)	860, 1346, 1482
AfaI	GTAC	7 cut(s)	57, 582, 821, 1365, 1597, 2186, 2199
AfiI	CCNNNNNNNGG	8 cut(s)	752, 764, 915, 1212, 1822, 2091, 2113, 2114
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	6 cut(s)	28, 595, 1057, 1187, 1939, 2206
AjnI	CCWGG	4 cut(s)	99, 467, 1807, 2062
AleI	CACNNNNGTG	1 cut(s)	1130
AloI	GAACNNNNNNTCC	4 cut(s)	726, 758, 1008, 1040
AluBI	AGCT	8 cut(s)	74, 400, 677, 980, 1333, 1550, 1700, 2130
AluI	AGCT	8 cut(s)	74, 400, 677, 980, 1333, 1550, 1700, 2130
Alw21I	GWGCWC	2 cut(s)	1335, 1806
Alw26I	GTCTC	6 cut(s)	161, 260, 809, 832, 948, 1598
AlwI	GGATC	2 cut(s)	188, 1223
Ama87I	CYCGRG	1 cut(s)	1276
ApeKI	GCWGC	7 cut(s)	443, 446, 464, 674, 1550, 1712, 1896
ApoI	RAATTY	6 cut(s)	702, 1417, 1619, 1671, 1934, 2206
ArsI	GACNNNNNNTTYG	2 cut(s)	1052, 1084
AseI	ATTAAT	1 cut(s)	1875
Asp700I	GAANNNNTTC	2 cut(s)	277, 923
Asp718I	GGTACC	1 cut(s)	2197
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	6 cut(s)	65, 352, 755, 1756, 2083, 2117
AsuC2I	CCSGG	3 cut(s)	968, 1466, 2108
AsuHPI	GGTGA	4 cut(s)	635, 1102, 2081, 2226
AvaI	CYCGRG	1 cut(s)	1276
AvaII	GGWCC	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	2108
BaeI	ACNNNNGTAYC	2 cut(s)	1795, 1828
BanI	GGYRCC	2 cut(s)	958, 2197
BanII	GRGCYC	2 cut(s)	1335, 1792
BauI	CACGAG	1 cut(s)	1514
BbsI	GAAGAC	1 cut(s)	848
Bbv12I	GWGCWC	2 cut(s)	1335, 1806
BbvI	GCAGC	7 cut(s)	430, 458, 476, 686, 1537, 1699, 1908
BccI	CCATC	6 cut(s)	76, 595, 1258, 1481, 1586, 2215
BceAI	ACGGC	1 cut(s)	1743
BciT130I	CCWGG	4 cut(s)	101, 469, 1809, 2064
BciVI	GTATCC	1 cut(s)	1823
BclI	TGATCA	1 cut(s)	1882
BcnI	CCSGG	3 cut(s)	968, 1466, 2108
BcoDI	GTCTC	6 cut(s)	161, 260, 809, 832, 948, 1598
BfaI	CTAG	6 cut(s)	77, 185, 575, 1589, 1676, 2260
BfmI	CTRYAG	1 cut(s)	444
BfuAI	ACCTGC	1 cut(s)	755
BfuI	GTATCC	1 cut(s)	1823
BglI	GCCNNNNNGGC	2 cut(s)	1160, 1787
BglII	AGATCT	2 cut(s)	639, 790
BisI	GCNGC	7 cut(s)	444, 447, 465, 675, 1551, 1713, 1897
BlsI	GCNGC	7 cut(s)	445, 448, 466, 676, 1552, 1714, 1898
BmcAI	AGTACT	1 cut(s)	57
Bme1390I	CCNGG	7 cut(s)	101, 469, 968, 1466, 1809, 2064, 2108
Bme18I	GGWCC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	1276
BmgT120I	GGNCC	6 cut(s)	65, 352, 755, 1756, 2083, 2117
BmiI	GGNNCC	7 cut(s)	756, 960, 989, 1757, 1845, 2118, 2199
BmrFI	CCNGG	7 cut(s)	101, 469, 968, 1466, 1809, 2064, 2108
BmrI	ACTGGG	1 cut(s)	1201
BmsI	GCATC	2 cut(s)	2024, 2171
BmuI	ACTGGG	1 cut(s)	1201
BpiI	GAAGAC	1 cut(s)	848
BpmI	CTGGAG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	142
BpuEI	CTTGAG	3 cut(s)	814, 1289, 1667
BpuMI	CCSGG	3 cut(s)	968, 1466, 2108
BsaAI	YACGTR	2 cut(s)	386, 646
BsaI	GGTCTC	2 cut(s)	161, 809
BsaJI	CCNNGG	8 cut(s)	151, 468, 1624, 1684, 1807, 1953, 2079, 2214
BsaXI	ACNNNNNCTCC	4 cut(s)	726, 756, 2216, 2246
Bsc4I	CCNNNNNNNGG	8 cut(s)	752, 764, 915, 1212, 1822, 2091, 2113, 2114
Bse1I	ACTGG	2 cut(s)	220, 1207
Bse3DI	GCAATG	3 cut(s)	234, 489, 1323
BseBI	CCWGG	4 cut(s)	101, 469, 1809, 2064
BseDI	CCNNGG	8 cut(s)	151, 468, 1624, 1684, 1807, 1953, 2079, 2214
BseGI	GGATG	1 cut(s)	606
BseLI	CCNNNNNNNGG	8 cut(s)	752, 764, 915, 1212, 1822, 2091, 2113, 2114
BseMI	GCAATG	3 cut(s)	234, 489, 1323
BseMII	CTCAG	4 cut(s)	1329, 1527, 1677, 1839
BseNI	ACTGG	2 cut(s)	220, 1207
BseRI	GAGGAG	3 cut(s)	66, 1934, 2110
BseSI	GKGCMC	1 cut(s)	2108
BseXI	GCAGC	7 cut(s)	430, 458, 476, 686, 1537, 1699, 1908
BseYI	CCCAGC	1 cut(s)	677
Bsh1236I	CGCG	1 cut(s)	1686
Bsh1285I	CGRYCG	1 cut(s)	1684
BshNI	GGYRCC	2 cut(s)	958, 2197
BsiEI	CGRYCG	1 cut(s)	1684
BsiHKAI	GWGCWC	2 cut(s)	1335, 1806
BsiHKCI	CYCGRG	1 cut(s)	1276
BsiSI	CCGG	4 cut(s)	501, 967, 1465, 2108
BslFI	GGGAC	2 cut(s)	943, 1419
BslI	CCNNNNNNNGG	8 cut(s)	752, 764, 915, 1212, 1822, 2091, 2113, 2114
BsmAI	GTCTC	6 cut(s)	161, 260, 809, 832, 948, 1598
BsmFI	GGGAC	2 cut(s)	943, 1419
BsmI	GAATGC	1 cut(s)	1439
Bso31I	GGTCTC	2 cut(s)	161, 809
BsoBI	CYCGRG	1 cut(s)	1276
Bsp1286I	GDGCHC	4 cut(s)	1335, 1792, 1806, 2108
Bsp143I	GATC	6 cut(s)	193, 639, 790, 1215, 1412, 1882
BspACI	CCGC	3 cut(s)	1294, 1684, 1686
BspCNI	CTCAG	4 cut(s)	1330, 1528, 1676, 1840
BspFNI	CGCG	1 cut(s)	1686
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	7 cut(s)	756, 960, 989, 1757, 1845, 2118, 2199
BspMAI	CTGCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	755
BspPI	GGATC	2 cut(s)	188, 1223
BspT107I	GGYRCC	2 cut(s)	958, 2197
BspTNI	GGTCTC	2 cut(s)	161, 809
BsrDI	GCAATG	3 cut(s)	234, 489, 1323
BsrI	ACTGG	2 cut(s)	220, 1207
BssECI	CCNNGG	8 cut(s)	151, 468, 1624, 1684, 1807, 1953, 2079, 2214
BssMI	GATC	6 cut(s)	193, 639, 790, 1215, 1412, 1882
BssSI	CACGAG	1 cut(s)	1514
BssT1I	CCWWGG	3 cut(s)	151, 1953, 2079
Bst2BI	CACGAG	1 cut(s)	1514
Bst2UI	CCWGG	4 cut(s)	101, 469, 1809, 2064
Bst6I	CTCTTC	2 cut(s)	1501, 1971
BstBAI	YACGTR	2 cut(s)	386, 646
BstC8I	GCNNGC	6 cut(s)	181, 480, 1143, 1653, 1688, 1792
BstDEI	CTNAG	6 cut(s)	142, 1338, 1536, 1663, 1837, 1848
BstDSI	CCRYGG	2 cut(s)	1624, 1684
BstEII	GGTNACC	1 cut(s)	1386
BstF5I	GGATG	1 cut(s)	606
BstFNI	CGCG	1 cut(s)	1686
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	6 cut(s)	196, 642, 793, 1218, 1415, 1885
BstMAI	GTCTC	6 cut(s)	161, 260, 809, 832, 948, 1598
BstMBI	GATC	6 cut(s)	193, 639, 790, 1215, 1412, 1882
BstMCI	CGRYCG	1 cut(s)	1684
BstMWI	GCNNNNNNNGC	8 cut(s)	440, 671, 1151, 1160, 1445, 1585, 1787, 1796
BstNI	CCWGG	4 cut(s)	101, 469, 1809, 2064
BstNSI	RCATGY	2 cut(s)	1513, 1655
BstPI	GGTNACC	1 cut(s)	1386
BstSCI	CCNGG	7 cut(s)	99, 467, 966, 1464, 1807, 2062, 2106
BstSFI	CTRYAG	1 cut(s)	444
BstSLI	GKGCMC	1 cut(s)	2108
BstUI	CGCG	1 cut(s)	1686
BstV1I	GCAGC	7 cut(s)	430, 458, 476, 686, 1537, 1699, 1908
BstV2I	GAAGAC	1 cut(s)	848
BstX2I	RGATCY	4 cut(s)	193, 639, 790, 1215
BstYI	RGATCY	4 cut(s)	193, 639, 790, 1215
BsuI	GTATCC	1 cut(s)	1823
BtgI	CCRYGG	2 cut(s)	1624, 1684
BtsCI	GGATG	1 cut(s)	606
BtsI	GCAGTG	2 cut(s)	1125, 1530
BtsIMutI	CAGTG	4 cut(s)	414, 1125, 1530, 2172
BveI	ACCTGC	1 cut(s)	755
Cac8I	GCNNGC	6 cut(s)	181, 480, 1143, 1653, 1688, 1792
CciI	TCATGA	1 cut(s)	616
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	6 cut(s)	65, 352, 755, 1756, 2083, 2117
Cfr42I	CCGCGG	1 cut(s)	1687
Csp6I	GTAC	7 cut(s)	56, 581, 820, 1364, 1596, 2185, 2198
CspCI	CAANNNNNGTGG	4 cut(s)	403, 438, 1102, 1137
CviAII	CATG	7 cut(s)	343, 617, 712, 1510, 1652, 1659, 1795
CviQI	GTAC	7 cut(s)	56, 581, 820, 1364, 1596, 2185, 2198
DdeI	CTNAG	6 cut(s)	142, 1338, 1536, 1663, 1837, 1848
DpnI	GATC	6 cut(s)	195, 641, 792, 1217, 1414, 1884
DpnII	GATC	6 cut(s)	193, 639, 790, 1215, 1412, 1882
EaeI	YGGCCR	2 cut(s)	393, 1797
Eam1104I	CTCTTC	2 cut(s)	1501, 1971
EarI	CTCTTC	2 cut(s)	1501, 1971
Ecl136II	GAGCTC	1 cut(s)	1333
Eco130I	CCWWGG	3 cut(s)	151, 1953, 2079
Eco147I	AGGCCT	2 cut(s)	1274, 1302
Eco24I	GRGCYC	2 cut(s)	1335, 1792
Eco31I	GGTCTC	2 cut(s)	161, 809
Eco32I	GATATC	1 cut(s)	1866
Eco47I	GGWCC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	1333
Eco57I	CTGAAG	3 cut(s)	860, 1346, 1482
Eco88I	CYCGRG	1 cut(s)	1276
Eco91I	GGTNACC	1 cut(s)	1386
EcoICRI	GAGCTC	1 cut(s)	1333
EcoO109I	RGGNCCY	1 cut(s)	2117
EcoO65I	GGTNACC	1 cut(s)	1386
EcoRI	GAATTC	4 cut(s)	702, 1619, 1671, 1934
EcoRII	CCWGG	4 cut(s)	99, 467, 1807, 2062
EcoRV	GATATC	1 cut(s)	1866
EcoT14I	CCWWGG	3 cut(s)	151, 1953, 2079
EcoT38I	GRGCYC	2 cut(s)	1335, 1792
ErhI	CCWWGG	3 cut(s)	151, 1953, 2079
FaeI	CATG	7 cut(s)	346, 620, 715, 1513, 1655, 1662, 1798
FaqI	GGGAC	2 cut(s)	943, 1419
FatI	CATG	7 cut(s)	342, 616, 711, 1509, 1651, 1658, 1794
FauI	CCCGC	2 cut(s)	1287, 1679
FbaI	TGATCA	1 cut(s)	1882
FblI	GTMKAC	1 cut(s)	1680
Fnu4HI	GCNGC	7 cut(s)	444, 447, 465, 675, 1551, 1713, 1897
FokI	GGATG	1 cut(s)	613
FriOI	GRGCYC	2 cut(s)	1335, 1792
Fsp4HI	GCNGC	7 cut(s)	444, 447, 465, 675, 1551, 1713, 1897
FspBI	CTAG	6 cut(s)	77, 185, 575, 1589, 1676, 2260
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	7 cut(s)	444, 447, 465, 675, 1551, 1713, 1897
GsaI	CCCAGC	1 cut(s)	681
GsuI	CTGGAG	1 cut(s)	83
HapII	CCGG	4 cut(s)	501, 967, 1465, 2108
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	7 cut(s)	346, 620, 715, 1513, 1655, 1662, 1798
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HincII	GTYRAC	2 cut(s)	1633, 1681
HindII	GTYRAC	2 cut(s)	1633, 1681
HindIII	AAGCTT	1 cut(s)	2128
HinfI	GANTC	4 cut(s)	249, 273, 2017, 2252
HpaI	GTTAAC	1 cut(s)	1633
HpaII	CCGG	4 cut(s)	501, 967, 1465, 2108
HphI	GGTGA	4 cut(s)	635, 1102, 2081, 2226
Hpy166II	GTNNAC	6 cut(s)	626, 836, 1098, 1366, 1633, 1681
Hpy188I	TCNGA	7 cut(s)	21, 296, 747, 1339, 1423, 1991, 2218
Hpy188III	TCNNGA	7 cut(s)	546, 617, 928, 1278, 1396, 1646, 2021
Hpy8I	GTNNAC	6 cut(s)	626, 836, 1098, 1366, 1633, 1681
HpyAV	CCTTC	7 cut(s)	614, 742, 1292, 1321, 1371, 1402, 1975
HpyCH4IV	ACGT	2 cut(s)	385, 645
HpyF10VI	GCNNNNNNNGC	8 cut(s)	440, 671, 1151, 1160, 1445, 1585, 1787, 1796
HpyF3I	CTNAG	6 cut(s)	142, 1338, 1536, 1663, 1837, 1848
HpySE526I	ACGT	2 cut(s)	385, 645
Hsp92II	CATG	7 cut(s)	346, 620, 715, 1513, 1655, 1662, 1798
HspAI	GCGC	1 cut(s)	651
KpnI	GGTACC	1 cut(s)	2201
Ksp22I	TGATCA	1 cut(s)	1882
KspAI	GTTAAC	1 cut(s)	1633
KspI	CCGCGG	1 cut(s)	1687
Kzo9I	GATC	6 cut(s)	193, 639, 790, 1215, 1412, 1882
LmnI	GCTCC	2 cut(s)	1330, 1697
Lsp1109I	GCAGC	7 cut(s)	430, 458, 476, 686, 1537, 1699, 1908
LweI	GCATC	2 cut(s)	2024, 2171
MaeI	CTAG	6 cut(s)	77, 185, 575, 1589, 1676, 2260
MaeII	ACGT	2 cut(s)	385, 645
MaeIII	GTNAC	3 cut(s)	1123, 1386, 2232
MalI	GATC	6 cut(s)	195, 641, 792, 1217, 1414, 1884
MboI	GATC	6 cut(s)	193, 639, 790, 1215, 1412, 1882
MfeI	CAATTG	3 cut(s)	696, 1182, 1947
MflI	RGATCY	4 cut(s)	193, 639, 790, 1215
MhlI	GDGCHC	4 cut(s)	1335, 1792, 1806, 2108
MmeI	TCCRAC	1 cut(s)	1648
MroXI	GAANNNNTTC	2 cut(s)	277, 923
MseI	TTAA	5 cut(s)	453, 1211, 1460, 1632, 1875
MslI	CAYNNNNRTG	3 cut(s)	347, 621, 1130
MspA1I	CMGCKG	2 cut(s)	677, 1686
MspI	CCGG	4 cut(s)	501, 967, 1465, 2108
MspR9I	CCNGG	7 cut(s)	101, 469, 968, 1466, 1809, 2064, 2108
MunI	CAATTG	3 cut(s)	696, 1182, 1947
Mva1269I	GAATGC	1 cut(s)	1439
MvaI	CCWGG	4 cut(s)	101, 469, 1809, 2064
MvnI	CGCG	1 cut(s)	1686
MwoI	GCNNNNNNNGC	8 cut(s)	440, 671, 1151, 1160, 1445, 1585, 1787, 1796
NciI	CCSGG	3 cut(s)	968, 1466, 2108
NdeII	GATC	6 cut(s)	193, 639, 790, 1215, 1412, 1882
NlaIII	CATG	7 cut(s)	346, 620, 715, 1513, 1655, 1662, 1798
NlaIV	GGNNCC	7 cut(s)	756, 960, 989, 1757, 1845, 2118, 2199
NmeAIII	GCCGAG	2 cut(s)	421, 1825
NmuCI	GTSAC	2 cut(s)	1123, 2232
NspI	RCATGY	2 cut(s)	1513, 1655
OliI	CACNNNNGTG	1 cut(s)	1130
PaeI	GCATGC	1 cut(s)	1655
PaeR7I	CTCGAG	1 cut(s)	1276
PagI	TCATGA	1 cut(s)	616
PceI	AGGCCT	2 cut(s)	1274, 1302
PctI	GAATGC	1 cut(s)	1439
PdmI	GAANNNNTTC	2 cut(s)	277, 923
PfeI	GAWTC	4 cut(s)	249, 273, 2017, 2252
PfoI	TCCNGGA	1 cut(s)	966
PkrI	GCNGC	7 cut(s)	445, 448, 466, 676, 1552, 1714, 1898
Ppu21I	YACGTR	2 cut(s)	386, 646
PshBI	ATTAAT	1 cut(s)	1875
PsiI	TTATAA	2 cut(s)	686, 1259
Psp124BI	GAGCTC	1 cut(s)	1335
Psp6I	CCWGG	4 cut(s)	99, 467, 1807, 2062
PspEI	GGTNACC	1 cut(s)	1386
PspFI	CCCAGC	1 cut(s)	677
PspGI	CCWGG	4 cut(s)	99, 467, 1807, 2062
PspN4I	GGNNCC	7 cut(s)	756, 960, 989, 1757, 1845, 2118, 2199
PspPI	GGNCC	6 cut(s)	65, 352, 755, 1756, 2083, 2117
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	4 cut(s)	193, 639, 790, 1215
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	7 cut(s)	57, 582, 821, 1365, 1597, 2186, 2199
RsaNI	GTAC	7 cut(s)	56, 581, 820, 1364, 1596, 2185, 2198
RseI	CAYNNNNRTG	3 cut(s)	347, 621, 1130
SacI	GAGCTC	1 cut(s)	1335
SacII	CCGCGG	1 cut(s)	1687
SalI	GTCGAC	1 cut(s)	1679
SaqAI	TTAA	5 cut(s)	453, 1211, 1460, 1632, 1875
SatI	GCNGC	7 cut(s)	444, 447, 465, 675, 1551, 1713, 1897
Sau3AI	GATC	6 cut(s)	193, 639, 790, 1215, 1412, 1882
Sau96I	GGNCC	6 cut(s)	65, 352, 755, 1756, 2083, 2117
ScaI	AGTACT	1 cut(s)	57
ScrFI	CCNGG	7 cut(s)	101, 469, 968, 1466, 1809, 2064, 2108
SduI	GDGCHC	4 cut(s)	1335, 1792, 1806, 2108
SfaNI	GCATC	2 cut(s)	2024, 2171
SfcI	CTRYAG	1 cut(s)	444
Sfr274I	CTCGAG	1 cut(s)	1276
Sfr303I	CCGCGG	1 cut(s)	1687
SgrBI	CCGCGG	1 cut(s)	1687
SinI	GGWCC	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	1276
SmiMI	CAYNNNNRTG	3 cut(s)	347, 621, 1130
SmlI	CTYRAG	4 cut(s)	829, 1268, 1276, 1646
SmoI	CTYRAG	4 cut(s)	829, 1268, 1276, 1646
SphI	GCATGC	1 cut(s)	1655
SseBI	AGGCCT	2 cut(s)	1274, 1302
SsiI	CCGC	3 cut(s)	1294, 1684, 1686
SspI	AATATT	2 cut(s)	108, 1879
SspMI	CTAG	6 cut(s)	77, 185, 575, 1589, 1676, 2260
SstI	GAGCTC	1 cut(s)	1335
StuI	AGGCCT	2 cut(s)	1274, 1302
StyD4I	CCNGG	7 cut(s)	99, 467, 966, 1464, 1807, 2062, 2106
StyI	CCWWGG	3 cut(s)	151, 1953, 2079
TaiI	ACGT	2 cut(s)	388, 648
TaqI	TCGA	4 cut(s)	1277, 1443, 1680, 2255
TatI	WGTACW	3 cut(s)	55, 819, 2184
TfiI	GAWTC	4 cut(s)	249, 273, 2017, 2252
Tru1I	TTAA	5 cut(s)	453, 1211, 1460, 1632, 1875
Tru9I	TTAA	5 cut(s)	453, 1211, 1460, 1632, 1875
TscAI	CASTG	4 cut(s)	421, 1132, 1537, 2172
TseFI	GTSAC	2 cut(s)	1123, 2232
TseI	GCWGC	7 cut(s)	443, 446, 464, 674, 1550, 1712, 1896
Tsp45I	GTSAC	2 cut(s)	1123, 2232
TspGWI	ACGGA	2 cut(s)	1613, 1805
TspRI	CASTG	4 cut(s)	421, 1132, 1537, 2172
VpaK11BI	GGWCC	1 cut(s)	65
VspI	ATTAAT	1 cut(s)	1875
XapI	RAATTY	6 cut(s)	702, 1417, 1619, 1671, 1934, 2206
XceI	RCATGY	2 cut(s)	1513, 1655
XcmI	CCANNNNNNNNNTGG	2 cut(s)	594, 1589
XhoI	CTCGAG	1 cut(s)	1276
XmiI	GTMKAC	1 cut(s)	1680
XmnI	GAANNNNTTC	2 cut(s)	277, 923
XspI	CTAG	6 cut(s)	77, 185, 575, 1589, 1676, 2260
ZrmI	AGTACT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.