Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018637

Physical Location & Seq

Genomic Coordinates Forward (+)

57009588 .. 57010509

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACATGGATTTTCTTAGCCTCTCTTCTTCTTCTCTCAAGCTTAGCAGAAACCTCTTATGGAGGCATTCTATTATCCTCTCTGCCCAACACTCTTGATGTCGCTGCTTCCCCTCACCAACCAGACCAGTTTAACACGCCCAACGGGACATGGTATATGTCGAGTAATATAAAAGCCGGAGAAGATAAACTCGGCGTTAGATGGTCTCTGAATAATAGGACTTTCCCAGTTGGAACCGATGCGGCGTATAAGACGGTCACCGTGAAGCTTTGCTACGCGCCGATGAGTCAAGTGGGCCGGCCGGAGAGGAAGACGGAGGACGACCTCGACAAGGACGAGACATGCCAGATAGAGTTCTATACTGGACACTACAACCCCTCTAGCAAGTGGCCGTACTACGAGTCGACATTGGATGGCCACGTGCCGGCCGCCTTGTACTTCCTACGCGCCTACGCAAACGACTCCGCCGGAGTTGTGGTGGCTTATGGTGAAAGCACGGGACCGGACAGAGACTACAACATATTTGAGGTCGACGCAACTGAGCCAACAGAGGCAAGCAGCGGAAGCCACAAGACGCTCGATATTTGCTTCGGTTCTTTCTCCGCTTTGCTGTTGGTTGGGTTTTTTTGTTGCTTAGAAGATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

215

Amino Acids

23.68

Weight (kDa)

4.54

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAR2	PF16974	26 - 179	3.5e-39	High-affinity nitrate transporter accessory, Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018637)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192381
rosa_laevigata	RLG00000004373
rosa_multiflora	Rmu_co8086522.1_g000001 Rmu_sc0003108.1_g000007
rosa_roxburghii	Rroxscaffold_3G00263080
rosa_rugosa	Rorug07G0000800
rosa_samantha	Rh7BG127100 Rh7CG128900 Rh7DG128900
rosa_wichuraiana	Rw7G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	404, 531
AccII	CGCG	2 cut(s)	278, 447
AciI	CCGC	5 cut(s)	242, 429, 465, 561, 603
AcoI	YGGCCR	4 cut(s)	299, 389, 415, 426
AcvI	CACGTG	1 cut(s)	421
AfaI	GTAC	2 cut(s)	395, 437
AfiI	CCNNNNNNNGG	2 cut(s)	331, 424
AluBI	AGCT	2 cut(s)	42, 268
AluI	AGCT	2 cut(s)	42, 268
Alw26I	GTCTC	3 cut(s)	210, 332, 504
AoxI	GGCC	5 cut(s)	295, 299, 389, 415, 426
ApeKI	GCWGC	2 cut(s)	104, 558
AspLEI	GCGC	2 cut(s)	280, 449
AspS9I	GGNCC	2 cut(s)	295, 500
AsuHPI	GGTGA	3 cut(s)	107, 250, 500
AvaII	GGWCC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	417
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BbrPI	CACGTG	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	91, 570
BccI	CCATC	2 cut(s)	195, 407
BceAI	ACGGC	1 cut(s)	376
BcoDI	GTCTC	3 cut(s)	210, 332, 504
BfaI	CTAG	1 cut(s)	381
BisI	GCNGC	4 cut(s)	105, 243, 429, 559
BlpI	GCTNAGC	1 cut(s)	43
BlsI	GCNGC	4 cut(s)	106, 244, 430, 560
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	2 cut(s)	295, 500
BmiI	GGNNCC	2 cut(s)	235, 501
BmrI	ACTGGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	229
BmuI	ACTGGG	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	317
Bpu1102I	GCTNAGC	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	421
BsaI	GGTCTC	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 424
Bse118I	RCCGGY	2 cut(s)	297, 424
Bse1I	ACTGG	3 cut(s)	127, 227, 367
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	331, 424
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	3 cut(s)	127, 227, 367
BseX3I	CGGCCG	2 cut(s)	299, 426
BseXI	GCAGC	2 cut(s)	91, 570
Bsh1236I	CGCG	2 cut(s)	278, 447
Bsh1285I	CGRYCG	2 cut(s)	302, 429
BshFI	GGCC	5 cut(s)	297, 301, 391, 417, 428
BsiEI	CGRYCG	2 cut(s)	302, 429
BsiSI	CCGG	6 cut(s)	177, 298, 302, 425, 468, 503
BslFI	GGGAC	2 cut(s)	160, 513
BslI	CCNNNNNNNGG	2 cut(s)	331, 424
BsmAI	GTCTC	3 cut(s)	210, 332, 504
BsmFI	GGGAC	2 cut(s)	160, 513
BsmI	GAATGC	1 cut(s)	66
BsnI	GGCC	5 cut(s)	297, 301, 391, 417, 428
Bso31I	GGTCTC	1 cut(s)	210
Bsp1720I	GCTNAGC	1 cut(s)	43
BspACI	CCGC	5 cut(s)	242, 429, 465, 561, 603
BspANI	GGCC	5 cut(s)	297, 301, 391, 417, 428
BspCNI	CTCAG	1 cut(s)	532
BspFNI	CGCG	2 cut(s)	278, 447
BspLI	GGNNCC	2 cut(s)	235, 501
BspTNI	GGTCTC	1 cut(s)	210
BsrFI	RCCGGY	2 cut(s)	297, 424
BsrI	ACTGG	3 cut(s)	127, 227, 367
BssAI	RCCGGY	2 cut(s)	297, 424
Bst4CI	ACNGT	2 cut(s)	256, 262
Bst6I	CTCTTC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	3 cut(s)	299, 426, 556
BstDEI	CTNAG	4 cut(s)	16, 43, 540, 634
BstEII	GGTNACC	1 cut(s)	256
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	2 cut(s)	278, 447
BstHHI	GCGC	2 cut(s)	280, 449
BstMAI	GTCTC	3 cut(s)	210, 332, 504
BstMCI	CGRYCG	2 cut(s)	302, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	564
BstNSI	RCATGY	1 cut(s)	345
BstPI	GGTNACC	1 cut(s)	256
BstUI	CGCG	2 cut(s)	278, 447
BstV1I	GCAGC	2 cut(s)	91, 570
BstV2I	GAAGAC	1 cut(s)	317
BstZI	CGGCCG	2 cut(s)	299, 426
BsuRI	GGCC	5 cut(s)	297, 301, 391, 417, 428
BtsCI	GGATG	1 cut(s)	418
Cac8I	GCNNGC	3 cut(s)	299, 426, 556
CfoI	GCGC	2 cut(s)	280, 449
Cfr10I	RCCGGY	2 cut(s)	297, 424
Cfr13I	GGNCC	2 cut(s)	295, 500
CseI	GACGC	2 cut(s)	542, 583
Csp6I	GTAC	2 cut(s)	394, 436
CviAII	CATG	3 cut(s)	6, 150, 342
CviQI	GTAC	2 cut(s)	394, 436
DdeI	CTNAG	4 cut(s)	16, 43, 540, 634
EaeI	YGGCCR	4 cut(s)	299, 389, 415, 426
EagI	CGGCCG	2 cut(s)	299, 426
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	454
EclXI	CGGCCG	2 cut(s)	299, 426
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	500
Eco52I	CGGCCG	2 cut(s)	299, 426
Eco72I	CACGTG	1 cut(s)	421
Eco91I	GGTNACC	1 cut(s)	256
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	256
FaeI	CATG	3 cut(s)	9, 153, 345
FaqI	GGGAC	2 cut(s)	160, 513
FatI	CATG	3 cut(s)	5, 149, 341
FblI	GTMKAC	2 cut(s)	404, 531
Fnu4HI	GCNGC	4 cut(s)	105, 243, 429, 559
FokI	GGATG	1 cut(s)	425
FseI	GGCCGGCC	1 cut(s)	301
Fsp4HI	GCNGC	4 cut(s)	105, 243, 429, 559
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	2 cut(s)	279, 448
GluI	GCNGC	4 cut(s)	105, 243, 429, 559
HaeIII	GGCC	5 cut(s)	297, 301, 391, 417, 428
HapII	CCGG	6 cut(s)	177, 298, 302, 425, 468, 503
HgaI	GACGC	2 cut(s)	542, 583
HhaI	GCGC	2 cut(s)	280, 449
Hin1II	CATG	3 cut(s)	9, 153, 345
Hin6I	GCGC	2 cut(s)	278, 447
HinP1I	GCGC	2 cut(s)	278, 447
HincII	GTYRAC	2 cut(s)	405, 532
HindII	GTYRAC	2 cut(s)	405, 532
HindIII	AAGCTT	2 cut(s)	40, 266
HinfI	GANTC	3 cut(s)	286, 401, 461
HpaII	CCGG	6 cut(s)	177, 298, 302, 425, 468, 503
HphI	GGTGA	3 cut(s)	107, 250, 500
Hpy166II	GTNNAC	2 cut(s)	405, 532
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	1 cut(s)	95
Hpy8I	GTNNAC	2 cut(s)	405, 532
Hpy99I	CGWCG	1 cut(s)	536
HpyCH4III	ACNGT	2 cut(s)	256, 262
HpyCH4IV	ACGT	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	564
HpyF3I	CTNAG	4 cut(s)	16, 43, 540, 634
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	9, 153, 345
HspAI	GCGC	2 cut(s)	278, 447
KroI	GCCGGC	2 cut(s)	297, 424
KroNI	GCCGGC	2 cut(s)	299, 426
Lsp1109I	GCAGC	2 cut(s)	91, 570
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	256
MboII	GAAGA	5 cut(s)	17, 20, 23, 194, 322
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	1 cut(s)	643
MluNI	TGGCCA	1 cut(s)	417
MlyI	GAGTC	3 cut(s)	295, 410, 455
MmeI	TCCRAC	1 cut(s)	211
Mox20I	TGGCCA	1 cut(s)	417
MroNI	GCCGGC	2 cut(s)	297, 424
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	2 cut(s)	132, 646
Msp20I	TGGCCA	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	561
MspI	CCGG	6 cut(s)	177, 298, 302, 425, 468, 503
Mva1269I	GAATGC	1 cut(s)	66
MvnI	CGCG	2 cut(s)	278, 447
MwoI	GCNNNNNNNGC	1 cut(s)	564
NaeI	GCCGGC	2 cut(s)	299, 426
NgoMIV	GCCGGC	2 cut(s)	297, 424
NlaIII	CATG	3 cut(s)	9, 153, 345
NlaIV	GGNNCC	2 cut(s)	235, 501
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	1 cut(s)	66
PdiI	GCCGGC	2 cut(s)	299, 426
PkrI	GCNGC	4 cut(s)	106, 244, 430, 560
PleI	GAGTC	3 cut(s)	294, 409, 455
PmaCI	CACGTG	1 cut(s)	421
PmlI	CACGTG	1 cut(s)	421
PpsI	GAGTC	3 cut(s)	294, 409, 455
Ppu21I	YACGTR	1 cut(s)	421
PspCI	CACGTG	1 cut(s)	421
PspEI	GGTNACC	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	235, 501
PspPI	GGNCC	2 cut(s)	295, 500
RigI	GGCCGGCC	1 cut(s)	301
RsaI	GTAC	2 cut(s)	395, 437
RsaNI	GTAC	2 cut(s)	394, 436
SalI	GTCGAC	2 cut(s)	403, 530
SaqAI	TTAA	2 cut(s)	132, 646
SatI	GCNGC	4 cut(s)	105, 243, 429, 559
Sau96I	GGNCC	2 cut(s)	295, 500
SchI	GAGTC	3 cut(s)	295, 410, 455
SetI	ASST	6 cut(s)	44, 56, 270, 327, 423, 531
SfaNI	GCATC	1 cut(s)	229
SinI	GGWCC	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	1 cut(s)	643
SsiI	CCGC	5 cut(s)	242, 429, 465, 561, 603
SspMI	CTAG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	256, 262
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	5 cut(s)	161, 327, 404, 531, 579
TasI	AATT	1 cut(s)	643
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	2 cut(s)	245, 431
Tru1I	TTAA	2 cut(s)	132, 646
Tru9I	TTAA	2 cut(s)	132, 646
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	104, 558
Tsp45I	GTSAC	1 cut(s)	256
TspGWI	ACGGA	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	500
XagI	CCTNNNNNAGG	1 cut(s)	329
XceI	RCATGY	1 cut(s)	345
XmiI	GTMKAC	2 cut(s)	404, 531
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.