Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0018637

Physical Location & Seq

Genomic Coordinates Reverse (-)

10150608 .. 10164334

Gene Structure 13727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG128900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTCGAGTAATATAAAAGCCGGAGAAGATAAACTCGGCGTTAGATGGTCTCTGAATAATAAGACTTTCCCAGTTGGAACCGATGCGGCGTATAAGACGGTCACCGTGAAGCTTTGCTACGCGCCGAGGAGTCAAGTGGGCCGGCCGGAGAGAAAGACGGAGGACGACCTCGACAAGGACAAGACATGCCAGATAGAGTTCTATACTGGACACTACAACCCCTCTAGCAAGTGGCCGTACTACGAGTCGACATTGGATGGCCACGTGCCGGCCGCCTTGTACTTCCTACGCGCCTACGCAAACGACTCCGCCGGAGTTGTGGTGGCTTATGGTGAAAGCACGGGACCGGACAGAGACTACAACATATTTGAGGTCGACGCAACTGAGCCAACAGGGGCAAGCAGCGGAAGCCGCAAGACGCTCGATATTTGCTTCGATAACGAACTGAGGATGGGTCAAGCTTCAATCGTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

158

Amino Acids

17.5

Weight (kDa)

5.06

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAR2	PF16974	4 - 127	7.2e-38	High-affinity nitrate transporter accessory, Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018637)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192381
rosa_laevigata	RLG00000004373
rosa_multiflora	Rmu_co8086522.1_g000001 Rmu_sc0003108.1_g000007
rosa_roxburghii	Rroxscaffold_3G00263080
rosa_rugosa	Rorug07G0000800
rosa_samantha	Rh7BG127100 Rh7CG128900 Rh7DG128900
rosa_wichuraiana	Rw7G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	248, 375
AccII	CGCG	2 cut(s)	122, 291
AciI	CCGC	5 cut(s)	86, 273, 309, 405, 412
AcoI	YGGCCR	4 cut(s)	143, 233, 259, 270
AcvI	CACGTG	1 cut(s)	265
AfaI	GTAC	2 cut(s)	239, 281
AfiI	CCNNNNNNNGG	2 cut(s)	175, 268
AgsI	TTSAA	1 cut(s)	465
AluBI	AGCT	2 cut(s)	112, 461
AluI	AGCT	2 cut(s)	112, 461
Alw26I	GTCTC	2 cut(s)	54, 348
AoxI	GGCC	5 cut(s)	139, 143, 233, 259, 270
ApeKI	GCWGC	1 cut(s)	402
AspLEI	GCGC	2 cut(s)	124, 293
AspS9I	GGNCC	2 cut(s)	139, 344
AsuHPI	GGTGA	2 cut(s)	94, 344
AvaII	GGWCC	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	261
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
BbrPI	CACGTG	1 cut(s)	265
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	3 cut(s)	39, 251, 445
BceAI	ACGGC	1 cut(s)	220
BcgI	CGANNNNNNTGC	2 cut(s)	403, 437
BcoDI	GTCTC	2 cut(s)	54, 348
BfaI	CTAG	1 cut(s)	225
BisI	GCNGC	4 cut(s)	87, 273, 403, 412
BlsI	GCNGC	4 cut(s)	88, 274, 404, 413
Bme18I	GGWCC	1 cut(s)	344
BmgT120I	GGNCC	2 cut(s)	139, 344
BmiI	GGNNCC	2 cut(s)	79, 345
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	73
BmuI	ACTGGG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	125
BsaWI	WCCGGW	1 cut(s)	346
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 268
Bse118I	RCCGGY	2 cut(s)	141, 268
Bse1I	ACTGG	2 cut(s)	71, 211
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	2 cut(s)	262, 456
BseLI	CCNNNNNNNGG	2 cut(s)	175, 268
BseMII	CTCAG	2 cut(s)	375, 437
BseNI	ACTGG	2 cut(s)	71, 211
BseRI	GAGGAG	1 cut(s)	142
BseX3I	CGGCCG	2 cut(s)	143, 270
BseXI	GCAGC	1 cut(s)	414
Bsh1236I	CGCG	2 cut(s)	122, 291
Bsh1285I	CGRYCG	2 cut(s)	146, 273
BshFI	GGCC	5 cut(s)	141, 145, 235, 261, 272
BsiEI	CGRYCG	2 cut(s)	146, 273
BsiSI	CCGG	6 cut(s)	21, 142, 146, 269, 312, 347
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	175, 268
BsmAI	GTCTC	2 cut(s)	54, 348
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	5 cut(s)	141, 145, 235, 261, 272
Bso31I	GGTCTC	1 cut(s)	54
BspACI	CCGC	5 cut(s)	86, 273, 309, 405, 412
BspANI	GGCC	5 cut(s)	141, 145, 235, 261, 272
BspCNI	CTCAG	2 cut(s)	376, 438
BspFNI	CGCG	2 cut(s)	122, 291
BspLI	GGNNCC	2 cut(s)	79, 345
BspTNI	GGTCTC	1 cut(s)	54
BsrFI	RCCGGY	2 cut(s)	141, 268
BsrI	ACTGG	2 cut(s)	71, 211
BssAI	RCCGGY	2 cut(s)	141, 268
BssECI	CCNNGG	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	100, 106
BstBAI	YACGTR	1 cut(s)	265
BstC8I	GCNNGC	3 cut(s)	143, 270, 400
BstDEI	CTNAG	2 cut(s)	384, 446
BstEII	GGTNACC	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	262, 456
BstFNI	CGCG	2 cut(s)	122, 291
BstHHI	GCGC	2 cut(s)	124, 293
BstMAI	GTCTC	2 cut(s)	54, 348
BstMCI	CGRYCG	2 cut(s)	146, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	408, 411
BstNSI	RCATGY	1 cut(s)	189
BstPI	GGTNACC	1 cut(s)	100
BstUI	CGCG	2 cut(s)	122, 291
BstV1I	GCAGC	1 cut(s)	414
BstZI	CGGCCG	2 cut(s)	143, 270
BsuRI	GGCC	5 cut(s)	141, 145, 235, 261, 272
BtsCI	GGATG	2 cut(s)	262, 456
Cac8I	GCNNGC	3 cut(s)	143, 270, 400
CfoI	GCGC	2 cut(s)	124, 293
Cfr10I	RCCGGY	2 cut(s)	141, 268
Cfr13I	GGNCC	2 cut(s)	139, 344
CseI	GACGC	2 cut(s)	386, 427
Csp6I	GTAC	2 cut(s)	238, 280
CviAII	CATG	1 cut(s)	186
CviQI	GTAC	2 cut(s)	238, 280
DdeI	CTNAG	2 cut(s)	384, 446
EaeI	YGGCCR	4 cut(s)	143, 233, 259, 270
EagI	CGGCCG	2 cut(s)	143, 270
EciI	GGCGGA	1 cut(s)	298
EclXI	CGGCCG	2 cut(s)	143, 270
Eco31I	GGTCTC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	344
Eco52I	CGGCCG	2 cut(s)	143, 270
Eco72I	CACGTG	1 cut(s)	265
Eco91I	GGTNACC	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	100
FaeI	CATG	1 cut(s)	189
FaiI	YATR	6 cut(s)	14, 93, 187, 204, 330, 365
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	1 cut(s)	185
FblI	GTMKAC	2 cut(s)	248, 375
Fnu4HI	GCNGC	4 cut(s)	87, 273, 403, 412
FokI	GGATG	2 cut(s)	269, 463
FseI	GGCCGGCC	1 cut(s)	145
Fsp4HI	GCNGC	4 cut(s)	87, 273, 403, 412
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	2 cut(s)	123, 292
GluI	GCNGC	4 cut(s)	87, 273, 403, 412
HaeIII	GGCC	5 cut(s)	141, 145, 235, 261, 272
HapII	CCGG	6 cut(s)	21, 142, 146, 269, 312, 347
HgaI	GACGC	2 cut(s)	386, 427
HhaI	GCGC	2 cut(s)	124, 293
Hin1II	CATG	1 cut(s)	189
Hin6I	GCGC	2 cut(s)	122, 291
HinP1I	GCGC	2 cut(s)	122, 291
HincII	GTYRAC	2 cut(s)	249, 376
HindII	GTYRAC	2 cut(s)	249, 376
HindIII	AAGCTT	2 cut(s)	110, 459
HinfI	GANTC	3 cut(s)	130, 245, 305
HpaII	CCGG	6 cut(s)	21, 142, 146, 269, 312, 347
HphI	GGTGA	2 cut(s)	94, 344
Hpy166II	GTNNAC	2 cut(s)	249, 376
Hpy188I	TCNGA	1 cut(s)	54
Hpy8I	GTNNAC	2 cut(s)	249, 376
Hpy99I	CGWCG	1 cut(s)	380
HpyCH4III	ACNGT	2 cut(s)	100, 106
HpyCH4IV	ACGT	1 cut(s)	264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	408, 411
HpyF3I	CTNAG	2 cut(s)	384, 446
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	1 cut(s)	189
HspAI	GCGC	2 cut(s)	122, 291
KroI	GCCGGC	2 cut(s)	141, 268
KroNI	GCCGGC	2 cut(s)	143, 270
Lsp1109I	GCAGC	1 cut(s)	414
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	100
MboII	GAAGA	1 cut(s)	38
MlsI	TGGCCA	1 cut(s)	261
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	3 cut(s)	139, 254, 299
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	6 cut(s)	120, 154, 179, 232, 364, 441
Mox20I	TGGCCA	1 cut(s)	261
MroNI	GCCGGC	2 cut(s)	141, 268
MscI	TGGCCA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	405
MspI	CCGG	6 cut(s)	21, 142, 146, 269, 312, 347
MvnI	CGCG	2 cut(s)	122, 291
MwoI	GCNNNNNNNGC	2 cut(s)	408, 411
NaeI	GCCGGC	2 cut(s)	143, 270
NgoMIV	GCCGGC	2 cut(s)	141, 268
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	2 cut(s)	79, 345
NmeAIII	GCCGAG	2 cut(s)	15, 150
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	189
PdiI	GCCGGC	2 cut(s)	143, 270
PkrI	GCNGC	4 cut(s)	88, 274, 404, 413
PleI	GAGTC	3 cut(s)	138, 253, 299
PmaCI	CACGTG	1 cut(s)	265
PmlI	CACGTG	1 cut(s)	265
PpsI	GAGTC	3 cut(s)	138, 253, 299
Ppu21I	YACGTR	1 cut(s)	265
PspCI	CACGTG	1 cut(s)	265
PspEI	GGTNACC	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	79, 345
PspPI	GGNCC	2 cut(s)	139, 344
RigI	GGCCGGCC	1 cut(s)	145
RsaI	GTAC	2 cut(s)	239, 281
RsaNI	GTAC	2 cut(s)	238, 280
SalI	GTCGAC	2 cut(s)	247, 374
SatI	GCNGC	4 cut(s)	87, 273, 403, 412
Sau96I	GGNCC	2 cut(s)	139, 344
SchI	GAGTC	3 cut(s)	139, 254, 299
SetI	ASST	5 cut(s)	114, 171, 267, 375, 463
SfaNI	GCATC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	344
SsiI	CCGC	5 cut(s)	86, 273, 309, 405, 412
SspMI	CTAG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	100, 106
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	6 cut(s)	5, 171, 248, 375, 423, 435
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	3 cut(s)	89, 275, 414
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	402
Tsp45I	GTSAC	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	344
XagI	CCTNNNNNAGG	1 cut(s)	173
XceI	RCATGY	1 cut(s)	189
XmiI	GTMKAC	2 cut(s)	248, 375
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.