Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0018637

Physical Location & Seq

Genomic Coordinates Reverse (-)

9985781 .. 9998513

Gene Structure 12733 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTCGAGTAATATAAAAGCCGGAGAAGATAAACTCGGCGTTAGATGGTCTCTGAATAATAGGACTTTCCCAGTTGGAACCGATGCGGTGTATAAGACGGTCACCGTGAAGCTTTGCTACGCGCCGACGAGTCAAGTGGGCCGGCCAGAGAGGAAGACGGAGGACGACCTCGACAAGGACCAGACATGCCAGATAGAGTTCTATACTGGACACTACAACCGGTCTAGCAGGTGGCCGTACTACGAGTCGACATTGGATGGCCACGTGCCGGCCGCCTTGTACTTCCTACGCGCCTACGCAAACGACTCCGCCGGAGTTGTGGTGGCTTATGGTGAAAGCACGGGACCGGACAGAGACTACAACATATTTGAGGTCGACGCAACTGAGCCAACAGAGGCAAGCAGCGGAAGCCGCAAGACGCTCGATAATATTTGCTTCGGTTCTTTCTCCGCTTTGCTGTTGTCGACTTTGGACCGCCACGTGCCGATCGCATCATACTTCGTACGCGCCTACGTGAACGACTCCGCCGGCGTTCTGGTGGCTTATGGTCAAAGCACGGGACCGAAAAAAGACTACAACATACTTGAGGTCGAGGCAAGCAGCGGAAGCCGCAAGACGATCGATATTTGCTTCGGTGCTTTCTCCGTTTTGTTCTTGGTTGCGTTCTTTGTTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

225

Amino Acids

24.82

Weight (kDa)

5.25

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAR2	PF16974	4 - 127	6.1e-36	High-affinity nitrate transporter accessory, Ig-like domain
NAR2	PF16974	156 - 202	8.3e-11	High-affinity nitrate transporter accessory, Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018637)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192381
rosa_laevigata	RLG00000004373
rosa_multiflora	Rmu_co8086522.1_g000001 Rmu_sc0003108.1_g000007
rosa_roxburghii	Rroxscaffold_3G00263080
rosa_rugosa	Rorug07G0000800
rosa_samantha	Rh7BG127100 Rh7CG128900 Rh7DG128900
rosa_wichuraiana	Rw7G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	219
AccI	GTMKAC	3 cut(s)	248, 375, 464
AccII	CGCG	3 cut(s)	122, 291, 507
AcoI	YGGCCR	4 cut(s)	143, 233, 259, 270
AcvI	CACGTG	2 cut(s)	265, 481
AfaI	GTAC	3 cut(s)	239, 281, 504
AfiI	CCNNNNNNNGG	2 cut(s)	175, 268
AgeI	ACCGGT	1 cut(s)	219
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw26I	GTCTC	2 cut(s)	54, 348
AoxI	GGCC	5 cut(s)	139, 143, 233, 259, 270
ApeKI	GCWGC	2 cut(s)	402, 600
AsiGI	ACCGGT	1 cut(s)	219
AspLEI	GCGC	3 cut(s)	124, 293, 509
AspS9I	GGNCC	5 cut(s)	139, 178, 344, 472, 560
AsuHPI	GGTGA	2 cut(s)	94, 344
AvaII	GGWCC	4 cut(s)	178, 344, 472, 560
BalI	TGGCCA	1 cut(s)	261
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
BbrPI	CACGTG	2 cut(s)	265, 481
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	414, 612
BccI	CCATC	2 cut(s)	39, 251
BceAI	ACGGC	1 cut(s)	220
BcgI	CGANNNNNNTGC	4 cut(s)	403, 437, 601, 635
BcoDI	GTCTC	2 cut(s)	54, 348
BfaI	CTAG	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	219
BisI	GCNGC	5 cut(s)	273, 403, 412, 601, 610
BlsI	GCNGC	5 cut(s)	274, 404, 413, 602, 611
Bme18I	GGWCC	4 cut(s)	178, 344, 472, 560
BmgT120I	GGNCC	5 cut(s)	139, 178, 344, 472, 560
BmiI	GGNNCC	3 cut(s)	79, 345, 561
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	73, 500
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	605
Bsa29I	ATCGAT	1 cut(s)	621
BsaAI	YACGTR	3 cut(s)	265, 481, 514
BsaI	GGTCTC	1 cut(s)	54
BsaWI	WCCGGW	2 cut(s)	219, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 268
Bse118I	RCCGGY	4 cut(s)	141, 219, 268, 527
Bse1I	ACTGG	2 cut(s)	71, 211
BseCI	ATCGAT	1 cut(s)	621
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	2 cut(s)	175, 268
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	2 cut(s)	71, 211
BseX3I	CGGCCG	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	414, 612
Bsh1236I	CGCG	3 cut(s)	122, 291, 507
Bsh1285I	CGRYCG	3 cut(s)	273, 489, 621
BshFI	GGCC	5 cut(s)	141, 145, 235, 261, 272
BshTI	ACCGGT	1 cut(s)	219
BshVI	ATCGAT	1 cut(s)	621
BsiEI	CGRYCG	3 cut(s)	273, 489, 621
BsiSI	CCGG	7 cut(s)	21, 142, 220, 269, 312, 347, 528
BsiWI	CGTACG	1 cut(s)	502
BslFI	GGGAC	2 cut(s)	357, 573
BslI	CCNNNNNNNGG	2 cut(s)	175, 268
BsmAI	GTCTC	2 cut(s)	54, 348
BsmFI	GGGAC	2 cut(s)	357, 573
BsnI	GGCC	5 cut(s)	141, 145, 235, 261, 272
Bso31I	GGTCTC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	486, 618
BspANI	GGCC	5 cut(s)	141, 145, 235, 261, 272
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	1 cut(s)	621
BspFNI	CGCG	3 cut(s)	122, 291, 507
BspLI	GGNNCC	3 cut(s)	79, 345, 561
BspMI	ACCTGC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	54
BsrFI	RCCGGY	4 cut(s)	141, 219, 268, 527
BsrI	ACTGG	2 cut(s)	71, 211
BssAI	RCCGGY	4 cut(s)	141, 219, 268, 527
BssMI	GATC	2 cut(s)	486, 618
Bst4CI	ACNGT	2 cut(s)	100, 106
BstBAI	YACGTR	3 cut(s)	265, 481, 514
BstC8I	GCNNGC	5 cut(s)	143, 270, 400, 529, 598
BstDEI	CTNAG	1 cut(s)	384
BstEII	GGTNACC	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	3 cut(s)	122, 291, 507
BstHHI	GCGC	3 cut(s)	124, 293, 509
BstKTI	GATC	2 cut(s)	489, 621
BstMAI	GTCTC	2 cut(s)	54, 348
BstMBI	GATC	2 cut(s)	486, 618
BstMCI	CGRYCG	3 cut(s)	273, 489, 621
BstMWI	GCNNNNNNNGC	4 cut(s)	408, 411, 606, 609
BstNSI	RCATGY	1 cut(s)	189
BstPI	GGTNACC	1 cut(s)	100
BstUI	CGCG	3 cut(s)	122, 291, 507
BstV1I	GCAGC	2 cut(s)	414, 612
BstV2I	GAAGAC	1 cut(s)	161
BstZI	CGGCCG	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	621
BsuRI	GGCC	5 cut(s)	141, 145, 235, 261, 272
BsuTUI	ATCGAT	1 cut(s)	621
BtsCI	GGATG	1 cut(s)	262
BveI	ACCTGC	1 cut(s)	219
Cac8I	GCNNGC	5 cut(s)	143, 270, 400, 529, 598
CfoI	GCGC	3 cut(s)	124, 293, 509
Cfr10I	RCCGGY	4 cut(s)	141, 219, 268, 527
Cfr13I	GGNCC	5 cut(s)	139, 178, 344, 472, 560
ClaI	ATCGAT	1 cut(s)	621
CseI	GACGC	2 cut(s)	386, 427
Csp6I	GTAC	3 cut(s)	238, 280, 503
CspAI	ACCGGT	1 cut(s)	219
CviAII	CATG	1 cut(s)	186
CviQI	GTAC	3 cut(s)	238, 280, 503
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	2 cut(s)	488, 620
DpnII	GATC	2 cut(s)	486, 618
EaeI	YGGCCR	4 cut(s)	143, 233, 259, 270
EagI	CGGCCG	1 cut(s)	270
EciI	GGCGGA	2 cut(s)	298, 514
EclXI	CGGCCG	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	54
Eco47I	GGWCC	4 cut(s)	178, 344, 472, 560
Eco52I	CGGCCG	1 cut(s)	270
Eco72I	CACGTG	2 cut(s)	265, 481
Eco91I	GGTNACC	1 cut(s)	100
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	100
FaeI	CATG	1 cut(s)	189
FaqI	GGGAC	2 cut(s)	357, 573
FatI	CATG	1 cut(s)	185
FblI	GTMKAC	3 cut(s)	248, 375, 464
Fnu4HI	GCNGC	5 cut(s)	273, 403, 412, 601, 610
FokI	GGATG	1 cut(s)	269
FseI	GGCCGGCC	1 cut(s)	145
Fsp4HI	GCNGC	5 cut(s)	273, 403, 412, 601, 610
FspBI	CTAG	1 cut(s)	225
GlaI	GCGC	3 cut(s)	123, 292, 508
GluI	GCNGC	5 cut(s)	273, 403, 412, 601, 610
HaeIII	GGCC	5 cut(s)	141, 145, 235, 261, 272
HapII	CCGG	7 cut(s)	21, 142, 220, 269, 312, 347, 528
HgaI	GACGC	2 cut(s)	386, 427
HhaI	GCGC	3 cut(s)	124, 293, 509
Hin1II	CATG	1 cut(s)	189
Hin6I	GCGC	3 cut(s)	122, 291, 507
HinP1I	GCGC	3 cut(s)	122, 291, 507
HincII	GTYRAC	3 cut(s)	249, 376, 465
HindII	GTYRAC	3 cut(s)	249, 376, 465
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	4 cut(s)	130, 245, 305, 521
HpaII	CCGG	7 cut(s)	21, 142, 220, 269, 312, 347, 528
HphI	GGTGA	2 cut(s)	94, 344
Hpy166II	GTNNAC	4 cut(s)	249, 376, 465, 517
Hpy188I	TCNGA	1 cut(s)	54
Hpy8I	GTNNAC	4 cut(s)	249, 376, 465, 517
Hpy99I	CGWCG	2 cut(s)	130, 380
HpyCH4III	ACNGT	2 cut(s)	100, 106
HpyCH4IV	ACGT	3 cut(s)	264, 480, 513
HpyF10VI	GCNNNNNNNGC	4 cut(s)	408, 411, 606, 609
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	3 cut(s)	264, 480, 513
Hsp92II	CATG	1 cut(s)	189
HspAI	GCGC	3 cut(s)	122, 291, 507
KroI	GCCGGC	3 cut(s)	141, 268, 527
KroNI	GCCGGC	3 cut(s)	143, 270, 529
Kzo9I	GATC	2 cut(s)	486, 618
Lsp1109I	GCAGC	2 cut(s)	414, 612
LweI	GCATC	2 cut(s)	73, 500
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	3 cut(s)	264, 480, 513
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	488, 620
MboI	GATC	2 cut(s)	486, 618
MboII	GAAGA	2 cut(s)	38, 166
MlsI	TGGCCA	1 cut(s)	261
MluNI	TGGCCA	1 cut(s)	261
MlyI	GAGTC	4 cut(s)	139, 254, 299, 515
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	7 cut(s)	144, 154, 179, 364, 388, 580, 586
Mox20I	TGGCCA	1 cut(s)	261
MreI	CGCCGGCG	1 cut(s)	527
MroNI	GCCGGC	3 cut(s)	141, 268, 527
MscI	TGGCCA	1 cut(s)	261
Msp20I	TGGCCA	1 cut(s)	261
MspA1I	CMGCKG	2 cut(s)	405, 603
MspI	CCGG	7 cut(s)	21, 142, 220, 269, 312, 347, 528
MvnI	CGCG	3 cut(s)	122, 291, 507
MwoI	GCNNNNNNNGC	4 cut(s)	408, 411, 606, 609
NaeI	GCCGGC	3 cut(s)	143, 270, 529
NdeII	GATC	2 cut(s)	486, 618
NgoMIV	GCCGGC	3 cut(s)	141, 268, 527
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	3 cut(s)	79, 345, 561
NmeAIII	GCCGAG	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	189
PaqCI	CACCTGC	1 cut(s)	219
PdiI	GCCGGC	3 cut(s)	143, 270, 529
Pfl23II	CGTACG	1 cut(s)	502
PinAI	ACCGGT	1 cut(s)	219
PkrI	GCNGC	5 cut(s)	274, 404, 413, 602, 611
Ple19I	CGATCG	2 cut(s)	489, 621
PleI	GAGTC	4 cut(s)	138, 253, 299, 515
PmaCI	CACGTG	2 cut(s)	265, 481
PmlI	CACGTG	2 cut(s)	265, 481
PpsI	GAGTC	4 cut(s)	138, 253, 299, 515
Ppu21I	YACGTR	3 cut(s)	265, 481, 514
PspCI	CACGTG	2 cut(s)	265, 481
PspEI	GGTNACC	1 cut(s)	100
PspLI	CGTACG	1 cut(s)	502
PspN4I	GGNNCC	3 cut(s)	79, 345, 561
PspPI	GGNCC	5 cut(s)	139, 178, 344, 472, 560
PvuI	CGATCG	2 cut(s)	489, 621
RigI	GGCCGGCC	1 cut(s)	145
RsaI	GTAC	3 cut(s)	239, 281, 504
RsaNI	GTAC	3 cut(s)	238, 280, 503
SalI	GTCGAC	3 cut(s)	247, 374, 463
SatI	GCNGC	5 cut(s)	273, 403, 412, 601, 610
Sau3AI	GATC	2 cut(s)	486, 618
Sau96I	GGNCC	5 cut(s)	139, 178, 344, 472, 560
SchI	GAGTC	4 cut(s)	139, 254, 299, 515
SetI	ASST	8 cut(s)	114, 171, 233, 267, 375, 483, 516, 591
SfaNI	GCATC	2 cut(s)	73, 500
SgrAI	CRCCGGYG	1 cut(s)	527
SinI	GGWCC	4 cut(s)	178, 344, 472, 560
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	100, 106
TaiI	ACGT	3 cut(s)	267, 483, 516
TaqI	TCGA	8 cut(s)	5, 171, 248, 375, 423, 464, 591, 621
TaqII	GACCGA	1 cut(s)	577
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	3 cut(s)	275, 414, 612
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	402, 600
Tsp45I	GTSAC	1 cut(s)	100
TspGWI	ACGGA	2 cut(s)	173, 634
VpaK11BI	GGWCC	4 cut(s)	178, 344, 472, 560
XagI	CCTNNNNNAGG	1 cut(s)	173
XceI	RCATGY	1 cut(s)	189
XmiI	GTMKAC	3 cut(s)	248, 375, 464
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.