Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0018637

Physical Location & Seq

Genomic Coordinates Reverse (-)

9415975 .. 9428516

Gene Structure 12542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG127100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGACATGGATTTTCTTAGCTTCTCTTCTTCTTCTCTCAAGCTTATCAGAAACCTCTTACGGAGGCATTCTATTATCCTCTCTGCCCAACACTCTTGATGTCGCTGCTTCCCCTCACCAACCAGACCAGTTTAACACACCCAACGGGACATGGTATATGTCCAGTAATATAAAAGCCGGAGAAGATAAACTCGGCGTTAGATGGTCTCTGAATAATAGGACTTTCCCAGTTGGAACCGATGCGGCGTATAAGACGGTCACCGTGAAGCTTTGCTACGCGCCGAGGAGTCAAGTGGGCCGGCCGGAGAGGAAGTCGGAGGACGACCTCGACAAGGACGAGACATGCCAGATAGAGTTCTATACTGGACACTACAACCCCTCTAGCAAGTGGCCGTACTACGAGTCGACATTGGATGGCCACGTGCCGGCCGCCTTGTACTTCCTACGCGCCTACGCAAACGACTCCGCCGGAGTTGTGGTGGCTTATGGTGAAAGCACGGGACCGGACAGAGACTACAACATATTTGAGGTCGACGCAACTGAGCCAACAGAGGCAAGCAGAGGAAGCCGCAAGACGCTCGATATTTGCTTCGAAACCGCTTACGGAGGCATTCTACTATCCTCTCTGCCCAACACTCTTGATGTCCTTGCTGCGGCTCAGAAACCAGGCCAGGGAGTTTCCCAGTTGGGAGTTGGGACAGATGCGGCGTATAAGACGGTCAACCTGAAGCTGTACTACGCGCCAGTAAGTCAAGTGGGCAAGCTGGGGAGGAAGACGGAGGACGACCTTGAAGAGGATAAGACATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0008150 GO:0008509 GO:0009611 GO:0010035 GO:0010167 GO:0015075 GO:0015103 GO:0015112 GO:0015318 GO:0015698 GO:0015706 GO:0016020 GO:0022857 GO:0034220 GO:0042221 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071705 GO:0071944 GO:0098656 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAR2

Protein Analysis

269

Amino Acids

29.43

Weight (kDa)

4.83

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAR2	PF16974	26 - 179	1.9e-38	High-affinity nitrate transporter accessory, Ig-like domain
NAR2	PF16974	229 - 269	2.9e-08	High-affinity nitrate transporter accessory, Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018637)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192381
rosa_laevigata	RLG00000004373
rosa_multiflora	Rmu_co8086522.1_g000001 Rmu_sc0003108.1_g000007
rosa_roxburghii	Rroxscaffold_3G00263080
rosa_rugosa	Rorug07G0000800
rosa_samantha	Rh7BG127100 Rh7CG128900 Rh7DG128900
rosa_wichuraiana	Rw7G010740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	404, 531
AccII	CGCG	3 cut(s)	278, 447, 740
AciI	CCGC	7 cut(s)	242, 429, 465, 568, 597, 653, 704
AcoI	YGGCCR	4 cut(s)	299, 389, 415, 426
AcuI	CTGAAG	1 cut(s)	746
AcvI	CACGTG	1 cut(s)	421
AfaI	GTAC	3 cut(s)	395, 437, 734
AfiI	CCNNNNNNNGG	5 cut(s)	331, 424, 652, 671, 793
AgsI	TTSAA	1 cut(s)	791
AjnI	CCWGG	2 cut(s)	664, 669
AluBI	AGCT	5 cut(s)	20, 42, 268, 730, 763
AluI	AGCT	5 cut(s)	20, 42, 268, 730, 763
Alw26I	GTCTC	3 cut(s)	210, 332, 504
AoxI	GGCC	6 cut(s)	295, 299, 389, 415, 426, 667
ApeKI	GCWGC	2 cut(s)	104, 650
AspLEI	GCGC	3 cut(s)	280, 449, 742
AspS9I	GGNCC	2 cut(s)	295, 500
AsuHPI	GGTGA	3 cut(s)	107, 250, 500
AsuII	TTCGAA	1 cut(s)	591
AvaII	GGWCC	1 cut(s)	500
BalI	TGGCCA	1 cut(s)	417
BarI	GAAGNNNNNNTAC	4 cut(s)	257, 289, 719, 751
BbrPI	CACGTG	1 cut(s)	421
BbsI	GAAGAC	1 cut(s)	779
BbvI	GCAGC	2 cut(s)	91, 637
BccI	CCATC	2 cut(s)	195, 407
BceAI	ACGGC	1 cut(s)	376
BcgI	CGANNNNNNTGC	2 cut(s)	559, 593
BciT130I	CCWGG	2 cut(s)	666, 671
BcoDI	GTCTC	3 cut(s)	210, 332, 504
BfaI	CTAG	2 cut(s)	381, 808
BisI	GCNGC	7 cut(s)	105, 243, 429, 568, 651, 654, 705
BlsI	GCNGC	7 cut(s)	106, 244, 430, 569, 652, 655, 706
Bme1390I	CCNGG	2 cut(s)	666, 671
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	2 cut(s)	295, 500
BmiI	GGNNCC	2 cut(s)	235, 501
BmrFI	CCNGG	2 cut(s)	666, 671
BmrI	ACTGGG	2 cut(s)	221, 676
BmsI	GCATC	2 cut(s)	229, 691
BmuI	ACTGGG	2 cut(s)	221, 676
BpiI	GAAGAC	1 cut(s)	779
Bpu14I	TTCGAA	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	421
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	281, 670
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 326, 462, 492
Bsc4I	CCNNNNNNNGG	5 cut(s)	331, 424, 652, 671, 793
Bse118I	RCCGGY	2 cut(s)	297, 424
Bse1I	ACTGG	6 cut(s)	127, 162, 227, 367, 682, 743
BseBI	CCWGG	2 cut(s)	666, 671
BseDI	CCNNGG	2 cut(s)	281, 670
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	5 cut(s)	331, 424, 652, 671, 793
BseMII	CTCAG	2 cut(s)	531, 671
BseNI	ACTGG	6 cut(s)	127, 162, 227, 367, 682, 743
BseRI	GAGGAG	1 cut(s)	298
BseX3I	CGGCCG	2 cut(s)	299, 426
BseXI	GCAGC	2 cut(s)	91, 637
BseYI	CCCAGC	1 cut(s)	763
Bsh1236I	CGCG	3 cut(s)	278, 447, 740
Bsh1285I	CGRYCG	2 cut(s)	302, 429
BshFI	GGCC	6 cut(s)	297, 301, 391, 417, 428, 669
BsiEI	CGRYCG	2 cut(s)	302, 429
BsiSI	CCGG	6 cut(s)	177, 298, 302, 425, 468, 503
BslFI	GGGAC	3 cut(s)	160, 513, 709
BslI	CCNNNNNNNGG	5 cut(s)	331, 424, 652, 671, 793
BsmAI	GTCTC	3 cut(s)	210, 332, 504
BsmFI	GGGAC	3 cut(s)	160, 513, 709
BsmI	GAATGC	2 cut(s)	66, 609
BsnI	GGCC	6 cut(s)	297, 301, 391, 417, 428, 669
Bso31I	GGTCTC	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	591
BspACI	CCGC	7 cut(s)	242, 429, 465, 568, 597, 653, 704
BspANI	GGCC	6 cut(s)	297, 301, 391, 417, 428, 669
BspCNI	CTCAG	2 cut(s)	532, 670
BspFNI	CGCG	3 cut(s)	278, 447, 740
BspLI	GGNNCC	2 cut(s)	235, 501
BspT104I	TTCGAA	1 cut(s)	591
BspTNI	GGTCTC	1 cut(s)	210
BsrFI	RCCGGY	2 cut(s)	297, 424
BsrI	ACTGG	6 cut(s)	127, 162, 227, 367, 682, 743
BssAI	RCCGGY	2 cut(s)	297, 424
BssECI	CCNNGG	2 cut(s)	281, 670
Bst2UI	CCWGG	2 cut(s)	666, 671
Bst4CI	ACNGT	3 cut(s)	256, 262, 718
Bst6I	CTCTTC	2 cut(s)	30, 786
BstBAI	YACGTR	1 cut(s)	421
BstBI	TTCGAA	1 cut(s)	591
BstC8I	GCNNGC	4 cut(s)	299, 426, 556, 761
BstDEI	CTNAG	3 cut(s)	16, 540, 657
BstEII	GGTNACC	1 cut(s)	256
BstENI	CCTNNNNNAGG	2 cut(s)	329, 791
BstF5I	GGATG	1 cut(s)	418
BstFNI	CGCG	3 cut(s)	278, 447, 740
BstHHI	GCGC	3 cut(s)	280, 449, 742
BstMAI	GTCTC	3 cut(s)	210, 332, 504
BstMCI	CGRYCG	2 cut(s)	302, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	564
BstNI	CCWGG	2 cut(s)	666, 671
BstNSI	RCATGY	2 cut(s)	345, 807
BstPI	GGTNACC	1 cut(s)	256
BstSCI	CCNGG	2 cut(s)	664, 669
BstUI	CGCG	3 cut(s)	278, 447, 740
BstV1I	GCAGC	2 cut(s)	91, 637
BstV2I	GAAGAC	1 cut(s)	779
BstZI	CGGCCG	2 cut(s)	299, 426
BsuRI	GGCC	6 cut(s)	297, 301, 391, 417, 428, 669
BtsCI	GGATG	1 cut(s)	418
Cac8I	GCNNGC	4 cut(s)	299, 426, 556, 761
CfoI	GCGC	3 cut(s)	280, 449, 742
Cfr10I	RCCGGY	2 cut(s)	297, 424
Cfr13I	GGNCC	2 cut(s)	295, 500
CseI	GACGC	2 cut(s)	542, 583
Csp6I	GTAC	3 cut(s)	394, 436, 733
CviAII	CATG	4 cut(s)	6, 150, 342, 804
CviQI	GTAC	3 cut(s)	394, 436, 733
DdeI	CTNAG	3 cut(s)	16, 540, 657
EaeI	YGGCCR	4 cut(s)	299, 389, 415, 426
EagI	CGGCCG	2 cut(s)	299, 426
Eam1104I	CTCTTC	2 cut(s)	30, 786
EarI	CTCTTC	2 cut(s)	30, 786
EciI	GGCGGA	1 cut(s)	454
EclXI	CGGCCG	2 cut(s)	299, 426
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	500
Eco52I	CGGCCG	2 cut(s)	299, 426
Eco57I	CTGAAG	1 cut(s)	746
Eco72I	CACGTG	1 cut(s)	421
Eco91I	GGTNACC	1 cut(s)	256
EcoNI	CCTNNNNNAGG	2 cut(s)	329, 791
EcoO65I	GGTNACC	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	664, 669
FaeI	CATG	4 cut(s)	9, 153, 345, 807
FaqI	GGGAC	3 cut(s)	160, 513, 709
FatI	CATG	4 cut(s)	5, 149, 341, 803
FblI	GTMKAC	2 cut(s)	404, 531
Fnu4HI	GCNGC	7 cut(s)	105, 243, 429, 568, 651, 654, 705
FokI	GGATG	1 cut(s)	425
FseI	GGCCGGCC	1 cut(s)	301
Fsp4HI	GCNGC	7 cut(s)	105, 243, 429, 568, 651, 654, 705
FspBI	CTAG	2 cut(s)	381, 808
GlaI	GCGC	3 cut(s)	279, 448, 741
GluI	GCNGC	7 cut(s)	105, 243, 429, 568, 651, 654, 705
GsaI	CCCAGC	1 cut(s)	767
HaeIII	GGCC	6 cut(s)	297, 301, 391, 417, 428, 669
HapII	CCGG	6 cut(s)	177, 298, 302, 425, 468, 503
HgaI	GACGC	2 cut(s)	542, 583
HhaI	GCGC	3 cut(s)	280, 449, 742
Hin1II	CATG	4 cut(s)	9, 153, 345, 807
Hin6I	GCGC	3 cut(s)	278, 447, 740
HinP1I	GCGC	3 cut(s)	278, 447, 740
HincII	GTYRAC	3 cut(s)	405, 532, 721
HindII	GTYRAC	3 cut(s)	405, 532, 721
HindIII	AAGCTT	2 cut(s)	40, 266
HinfI	GANTC	3 cut(s)	286, 401, 461
HpaII	CCGG	6 cut(s)	177, 298, 302, 425, 468, 503
HphI	GGTGA	3 cut(s)	107, 250, 500
Hpy166II	GTNNAC	3 cut(s)	405, 532, 721
Hpy188I	TCNGA	4 cut(s)	49, 210, 316, 660
Hpy188III	TCNNGA	2 cut(s)	95, 638
Hpy8I	GTNNAC	3 cut(s)	405, 532, 721
Hpy99I	CGWCG	1 cut(s)	536
HpyCH4III	ACNGT	3 cut(s)	256, 262, 718
HpyCH4IV	ACGT	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	564
HpyF3I	CTNAG	3 cut(s)	16, 540, 657
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	9, 153, 345, 807
HspAI	GCGC	3 cut(s)	278, 447, 740
KroI	GCCGGC	2 cut(s)	297, 424
KroNI	GCCGGC	2 cut(s)	299, 426
Lsp1109I	GCAGC	2 cut(s)	91, 637
LweI	GCATC	2 cut(s)	229, 691
MaeI	CTAG	2 cut(s)	381, 808
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	256
MboII	GAAGA	6 cut(s)	17, 20, 23, 194, 784, 803
MlsI	TGGCCA	1 cut(s)	417
MluNI	TGGCCA	1 cut(s)	417
MlyI	GAGTC	3 cut(s)	295, 410, 455
MmeI	TCCRAC	2 cut(s)	211, 294
Mox20I	TGGCCA	1 cut(s)	417
MroNI	GCCGGC	2 cut(s)	297, 424
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	417
MspI	CCGG	6 cut(s)	177, 298, 302, 425, 468, 503
MspR9I	CCNGG	2 cut(s)	666, 671
Mva1269I	GAATGC	2 cut(s)	66, 609
MvaI	CCWGG	2 cut(s)	666, 671
MvnI	CGCG	3 cut(s)	278, 447, 740
MwoI	GCNNNNNNNGC	1 cut(s)	564
NaeI	GCCGGC	2 cut(s)	299, 426
NgoMIV	GCCGGC	2 cut(s)	297, 424
NlaIII	CATG	4 cut(s)	9, 153, 345, 807
NlaIV	GGNNCC	2 cut(s)	235, 501
NmeAIII	GCCGAG	2 cut(s)	171, 306
NmuCI	GTSAC	1 cut(s)	256
NspI	RCATGY	2 cut(s)	345, 807
NspV	TTCGAA	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	2 cut(s)	66, 609
PdiI	GCCGGC	2 cut(s)	299, 426
PkrI	GCNGC	7 cut(s)	106, 244, 430, 569, 652, 655, 706
PleI	GAGTC	3 cut(s)	294, 409, 455
PmaCI	CACGTG	1 cut(s)	421
PmlI	CACGTG	1 cut(s)	421
PpsI	GAGTC	3 cut(s)	294, 409, 455
Ppu21I	YACGTR	1 cut(s)	421
Psp6I	CCWGG	2 cut(s)	664, 669
PspCI	CACGTG	1 cut(s)	421
PspEI	GGTNACC	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	763
PspGI	CCWGG	2 cut(s)	664, 669
PspN4I	GGNNCC	2 cut(s)	235, 501
PspPI	GGNCC	2 cut(s)	295, 500
RigI	GGCCGGCC	1 cut(s)	301
RsaI	GTAC	3 cut(s)	395, 437, 734
RsaNI	GTAC	3 cut(s)	394, 436, 733
SalI	GTCGAC	2 cut(s)	403, 530
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	7 cut(s)	105, 243, 429, 568, 651, 654, 705
Sau96I	GGNCC	2 cut(s)	295, 500
SchI	GAGTC	3 cut(s)	295, 410, 455
ScrFI	CCNGG	2 cut(s)	666, 671
SfaNI	GCATC	2 cut(s)	229, 691
SfuI	TTCGAA	1 cut(s)	591
SinI	GGWCC	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
SsiI	CCGC	7 cut(s)	242, 429, 465, 568, 597, 653, 704
SspMI	CTAG	2 cut(s)	381, 808
StyD4I	CCNGG	2 cut(s)	664, 669
TaaI	ACNGT	3 cut(s)	256, 262, 718
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	5 cut(s)	327, 404, 531, 579, 591
TatI	WGTACW	2 cut(s)	435, 732
TauI	GCSGC	5 cut(s)	245, 431, 570, 656, 707
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	2 cut(s)	104, 650
Tsp45I	GTSAC	1 cut(s)	256
TspGWI	ACGGA	3 cut(s)	75, 618, 791
VpaK11BI	GGWCC	1 cut(s)	500
XagI	CCTNNNNNAGG	2 cut(s)	329, 791
XceI	RCATGY	2 cut(s)	345, 807
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XmiI	GTMKAC	2 cut(s)	404, 531
XspI	CTAG	2 cut(s)	381, 808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.