Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012968

Physical Location & Seq

Genomic Coordinates Reverse (-)

61336549 .. 61343078

Gene Structure 6530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGACGGCAGTGGCGAGCTCATTGGTCCACGACGTTCTCGGCCGGAGAGCCGACGACGTCGACCGACCTATAATCGACTACATCATCAACGTCCTTGCCGACGAGGACTTCGATTTCGGCGACGACGGAGAAGGCGCCTTTGACGCTCTCGGCGAGCTCCTCGTCGCTGCTGAATGCGTCGCTGACTTTGATGAGTGCCGCTCGGTTTGCAGTACGTTAACTGAAAAATTTGGGAAGCATGGTTTGGTTAAAGCCAAACCGACTGTGCGGAGTCTTGCGGCGCCAGTGAGAATGGATGATGGAATGGATGAGGGGGAAGCACCGAAGAAGAAGCAGGAGTTGATTGATGGCCCGGTGCTGACTGAACGTGATCGGGCGAAGCTAGATAGGCGAAAGAGGAAGGATGAGCGCCAAAGAGAGCAACAATATCAAATGCATTTAGCAGAAATGGAAGCAGCTAGGGCAGGAATGCCTGTTGTCACTGTAAATCATGATGGCGGTGGTGGCGCAAATGTCAAGGATCTCCATCTTGAAGGCTTCAATGTTTCTGTGGGTGGACGTGATCTAATTGTGGATGGTGCAGTAACACTTTCTTTTGGAAGGCATTATGGACTTATTGGAAGAAATGGTACTGGAAAAACAACGTTTCTTAGGCACTTGGCTATGCATGCCATTGATGGCATTCCTAACAGCTGCCAAATATTGCACGTGGAGCAAGAAGTGGCAGGTGATGATACATCAGCCTTGCAATGTGTTGTTAACACCGATATCGAAAGAAGCCAGCTTTTGGAAGAAGAAGCTCGTCTCCTTGCTCAACAGAGAGAACTGGAGCTGGAGGACGAAGCGGGAAAGAGCAATGGAGAAATTGACAAAGATGCCATTGGACTGAGGCTTCAGGAGGTATACAAGAGGCTTGAGTTCATCGATGCTGATTCTGCAGAGTCACGTGCAGCTTCCATTCTTGCGGGTCTTAGTTTCTCTCCCGAGATGCAGCGAAAAGCAACTAAAACATTTTCTGGAGGATGGAGAATGAGAATAGCTCTTGCTCGTGCCCTCTTTATAGAGCCTGACTTGTTACTGCTTGATGAACCTACAAACCATCTTGATCTTCATGCTGTCCTTTGGCTAGAGGCTTACCTGGTGAAGTGGCCAAAAACATGTATCATTGTTTCTCATGCTAGAGAATTCTTGAACTCGGTGGTAACTGATATCCTTCATCTTCATGGGCAAAAGTTGACTGCTTACAAAGGTGACTATGATACATATGAGAGGACAAGAGTGGAACAGCTCAAGAACCAACAGAAAGCATTTGAATCTAACGAGCGTTCAAGAAATCATATGCAGGCTTTCATCGATAAGTTTCGCTATAATGCCAAGAGGGCCGCTCTCGTGCAATCAAGAATTAAGGCATTGGACCGGTTGGGACATGTGGATGAAATTGTAAATGACCCTGATGATGCATCATTTGGTTATCCTGGTGGACCCCTTTTGTTTAAGAATTTAAATTTTGGAATTGACCTAGACAGCCGCATTGCAATGGTTGGGCCAAATGGCATTGGGAAATCAACTATATTGAAGCTAATTGCAGGAGAGCTGCAACCAACCTCTGGGACAGTTTTCCGGTCAGCTAAGGTTCGTATTGCTGTTTTCAGTCAGCATCACGTTGACGGGCTAGATCTAACTTCCAATCCTCTGTTGTATATGATGCGGTGCTTCCCAGGAGTGCCTGAACAGAAGCTCCGATCTCACTTGGGTTCTTTTGGTGTAACTGGAAATCTCGCACTGCAGCCAATGTACACTCTGTCTGGTGGTCAGAAGAGCAGAGTTGCATTTGCAAAGATAACTTTCAAGAAGCCACACATAATATTGCTCGATGAGCCCTCCAATCATCTGGCAAGTCACAGTCTTTGTTGTTATATACTATATTGCATAGGAAACCGTTATCTGGATTTCGAATTGCTTGATCTGGATGCTGTGGAGGCATTGATTCAAGGTCTTGTTATCTTCCAAGGAGGCATTCTCATGGTTAGTCACGATGAGCATCTGATCTCTGGGAGTGTGGATGAGCTATGGGTGGTATCTGAAGGCAAGATAGCACCATTCCATGGAACTTTCCAGGACTACAAGAAGATACTGCAGTCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

715

Amino Acids

79.37

Weight (kDa)

5.69

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWI_ABCF3	PF26051	9 - 79	4.5e-15	ABCF3, PWI-like helical bundle domain
ABC_tran	PF00005	195 - 366	3.2e-18	ABC transporter
ABC_tran_Xtn	PF12848	405 - 480	4.2e-24	ABC transporter
ABC_tran	PF00005	498 - 629	9.7e-23	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64550
fragaria_vesca	FvH4_5g11480 FvH4_5g11480
malus_domestica	MD06G1113200.v1.1 MD14G1134300.v1.1
prunus_persica	Prupe.5G126100_v2.0.a1 Prupe.5G126100_v2.0.a1
pyrus_communis	pycom06g10590
rosa_chinensis	RchiOBHm_Chr7g0186321
rosa_laevigata	RLG00000004849 RLG00000034878
rosa_multiflora	Rmu_sc0000645.1_g000050
rosa_roxburghii	Rroxscaffold_3G00268220
rosa_rugosa	Rorug06G0473500
rosa_samantha	Rh7AG067700 Rh7BG083500 Rh7CG080300
rosa_wichuraiana	Rw7G006730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	716
AatII	GACGTC	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	716
AccB1I	GGYRCC	2 cut(s)	134, 280
AccB7I	CCANNNNNTGG	3 cut(s)	787, 1607, 2105
AccBSI	CCGCTC	2 cut(s)	201, 1385
AccI	GTMKAC	2 cut(s)	60, 903
AciI	CCGC	9 cut(s)	199, 268, 278, 498, 845, 965, 1383, 1528, 1708
AclI	AACGTT	1 cut(s)	644
AclWI	GGATC	1 cut(s)	528
AcoI	YGGCCR	2 cut(s)	40, 1148
AcsI	RAATTY	4 cut(s)	227, 1184, 1498, 1504
AcuI	CTGAAG	2 cut(s)	878, 2103
AcvI	CACGTG	2 cut(s)	709, 947
AcyI	GRCGYC	3 cut(s)	57, 135, 281
AfaI	GTAC	3 cut(s)	214, 631, 1796
AfiI	CCNNNNNNNGG	4 cut(s)	787, 1607, 1945, 2105
AflIII	ACRYGT	2 cut(s)	1157, 1426
AgeI	ACCGGT	1 cut(s)	1416
AgsI	TTSAA	8 cut(s)	533, 541, 1192, 1313, 1329, 1576, 1849, 1991
AjiI	CACGTC	1 cut(s)	560
AjnI	CCWGG	4 cut(s)	1137, 1474, 1717, 2115
AjuI	GAANNNNNNNTTGG	4 cut(s)	227, 259, 2001, 2033
AloI	GAACNNNNNNTCC	2 cut(s)	1722, 1754
Alw21I	GWGCWC	2 cut(s)	20, 159
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	1 cut(s)	528
Ama87I	CYCGRG	1 cut(s)	983
AoxI	GGCC	5 cut(s)	40, 349, 1148, 1380, 1544
ApeKI	GCWGC	7 cut(s)	167, 455, 693, 950, 991, 1594, 1786
ApoI	RAATTY	4 cut(s)	227, 1184, 1498, 1504
ArsI	GACNNNNNNTTYG	4 cut(s)	92, 98, 124, 130
AsiGI	ACCGGT	1 cut(s)	1416
AspLEI	GCGC	4 cut(s)	137, 283, 411, 509
AspS9I	GGNCC	6 cut(s)	25, 350, 1380, 1414, 1481, 1544
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	3 cut(s)	740, 1153, 1262
AsuII	TTCGAA	1 cut(s)	1953
AvaI	CYCGRG	1 cut(s)	983
AvaII	GGWCC	3 cut(s)	25, 1414, 1481
BaeGI	GKGCMC	1 cut(s)	1054
BaeI	ACNNNNGTAYC	1 cut(s)	2123
BalI	TGGCCA	1 cut(s)	1150
BanI	GGYRCC	2 cut(s)	134, 280
BanII	GRGCYC	3 cut(s)	20, 159, 1881
BarI	GAAGNNNNNNTAC	2 cut(s)	613, 645
BauI	CACGAG	2 cut(s)	1047, 1388
BbrPI	CACGTG	2 cut(s)	709, 947
Bbv12I	GWGCWC	2 cut(s)	20, 159
BbvI	GCAGC	7 cut(s)	154, 467, 680, 962, 1003, 1581, 1798
BccI	CCATC	8 cut(s)	293, 341, 488, 534, 569, 671, 1017, 1107
BceAI	ACGGC	1 cut(s)	21
BciT130I	CCWGG	4 cut(s)	1139, 1476, 1719, 2117
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	809
BfaI	CTAG	6 cut(s)	383, 459, 1127, 1179, 1520, 1673
BfmI	CTRYAG	3 cut(s)	936, 1784, 2135
BfoI	RGCGCY	3 cut(s)	138, 284, 412
BfuAI	ACCTGC	1 cut(s)	716
BglI	GCCNNNNNGGC	1 cut(s)	1379
BglII	AGATCT	1 cut(s)	1675
Bme1390I	CCNGG	5 cut(s)	353, 1139, 1476, 1719, 2117
Bme18I	GGWCC	3 cut(s)	25, 1414, 1481
BmeT110I	CYCGRG	1 cut(s)	983
BmgBI	CACGTC	1 cut(s)	560
BmgT120I	GGNCC	6 cut(s)	25, 350, 1380, 1414, 1481, 1544
BmiI	GGNNCC	3 cut(s)	136, 282, 1483
BmrFI	CCNGG	5 cut(s)	353, 1139, 1476, 1719, 2117
BmsI	GCATC	9 cut(s)	865, 916, 978, 1447, 1469, 1666, 1695, 1960, 2050
BplI	GAGNNNNNCTC	8 cut(s)	185, 217, 1024, 1056, 1369, 1401, 2004, 2036
BpmI	CTGGAG	3 cut(s)	848, 854, 1038
Bpu10I	CCTNAGC	1 cut(s)	1629
Bpu14I	TTCGAA	1 cut(s)	1953
BpuEI	CTTGAG	2 cut(s)	935, 1274
BpuMI	CCSGG	1 cut(s)	353
Bsa29I	ATCGAT	2 cut(s)	924, 1353
BsaAI	YACGTR	2 cut(s)	709, 947
BsaBI	GATNNNNATC	2 cut(s)	525, 2040
BsaHI	GRCGYC	3 cut(s)	57, 135, 281
BsaJI	CCNNGG	3 cut(s)	1717, 2008, 2104
BsaWI	WCCGGW	2 cut(s)	1416, 1620
BsaXI	ACNNNNNCTCC	2 cut(s)	1722, 1752
Bsc4I	CCNNNNNNNGG	4 cut(s)	787, 1607, 1945, 2105
Bse118I	RCCGGY	1 cut(s)	1416
Bse1I	ACTGG	4 cut(s)	284, 637, 831, 1774
Bse3DI	GCAATG	4 cut(s)	755, 862, 1530, 1542
Bse8I	GATNNNNATC	2 cut(s)	525, 2040
BseBI	CCWGG	4 cut(s)	1139, 1476, 1719, 2117
BseCI	ATCGAT	2 cut(s)	924, 1353
BseDI	CCNNGG	3 cut(s)	1717, 2008, 2104
BseGI	GGATG	8 cut(s)	301, 313, 409, 580, 1028, 1438, 1975, 2068
BseJI	GATNNNNATC	2 cut(s)	525, 2040
BseLI	CCNNNNNNNGG	4 cut(s)	787, 1607, 1945, 2105
BseMI	GCAATG	4 cut(s)	755, 862, 1530, 1542
BseMII	CTCAG	1 cut(s)	878
BseNI	ACTGG	4 cut(s)	284, 637, 831, 1774
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	1054
BseX3I	CGGCCG	1 cut(s)	40
BseXI	GCAGC	7 cut(s)	154, 467, 680, 962, 1003, 1581, 1798
BsgI	GTGCAG	2 cut(s)	600, 969
Bsh1285I	CGRYCG	2 cut(s)	43, 64
BshFI	GGCC	5 cut(s)	42, 351, 1150, 1382, 1546
BshNI	GGYRCC	2 cut(s)	134, 280
BshTI	ACCGGT	1 cut(s)	1416
BshVI	ATCGAT	2 cut(s)	924, 1353
BsiEI	CGRYCG	2 cut(s)	43, 64
BsiHKAI	GWGCWC	2 cut(s)	20, 159
BsiHKCI	CYCGRG	1 cut(s)	983
BsiSI	CCGG	4 cut(s)	43, 353, 1417, 1621
BslFI	GGGAC	2 cut(s)	1437, 1624
BslI	CCNNNNNNNGG	4 cut(s)	787, 1607, 1945, 2105
BsmAI	GTCTC	1 cut(s)	809
BsmBI	CGTCTC	1 cut(s)	809
BsmFI	GGGAC	2 cut(s)	1437, 1624
BsmI	GAATGC	4 cut(s)	179, 474, 681, 2016
BsnI	GGCC	5 cut(s)	42, 351, 1150, 1382, 1546
BsoBI	CYCGRG	1 cut(s)	983
Bsp119I	TTCGAA	1 cut(s)	1953
Bsp1286I	GDGCHC	4 cut(s)	20, 159, 1054, 1881
Bsp1407I	TGTACA	1 cut(s)	1794
Bsp143I	GATC	8 cut(s)	370, 520, 562, 1105, 1675, 1742, 1963, 2046
Bsp19I	CCATGG	1 cut(s)	2104
BspACI	CCGC	9 cut(s)	199, 268, 278, 498, 845, 965, 1383, 1528, 1708
BspANI	GGCC	5 cut(s)	42, 351, 1150, 1382, 1546
BspCNI	CTCAG	1 cut(s)	879
BspDI	ATCGAT	2 cut(s)	924, 1353
BspHI	TCATGA	1 cut(s)	490
BspLI	GGNNCC	3 cut(s)	136, 282, 1483
BspMAI	CTGCAG	3 cut(s)	940, 1788, 2139
BspMI	ACCTGC	1 cut(s)	716
BspPI	GGATC	1 cut(s)	528
BspQI	GCTCTTC	1 cut(s)	1811
BspT104I	TTCGAA	1 cut(s)	1953
BspT107I	GGYRCC	2 cut(s)	134, 280
BsrBI	CCGCTC	2 cut(s)	201, 1385
BsrDI	GCAATG	4 cut(s)	755, 862, 1530, 1542
BsrFI	RCCGGY	1 cut(s)	1416
BsrGI	TGTACA	1 cut(s)	1794
BsrI	ACTGG	4 cut(s)	284, 637, 831, 1774
BssAI	RCCGGY	1 cut(s)	1416
BssECI	CCNNGG	3 cut(s)	1717, 2008, 2104
BssMI	GATC	8 cut(s)	370, 520, 562, 1105, 1675, 1742, 1963, 2046
BssNAI	GTATAC	1 cut(s)	904
BssNI	GRCGYC	3 cut(s)	57, 135, 281
BssSI	CACGAG	2 cut(s)	1047, 1388
BssT1I	CCWWGG	2 cut(s)	2008, 2104
Bst1107I	GTATAC	1 cut(s)	904
Bst2BI	CACGAG	2 cut(s)	1047, 1388
Bst2UI	CCWGG	4 cut(s)	1139, 1476, 1719, 2117
Bst4CI	ACNGT	5 cut(s)	265, 484, 1615, 1904, 1940
Bst6I	CTCTTC	1 cut(s)	1811
BstACI	GRCGYC	3 cut(s)	57, 135, 281
BstAUI	TGTACA	1 cut(s)	1794
BstBAI	YACGTR	2 cut(s)	709, 947
BstBI	TTCGAA	1 cut(s)	1953
BstC8I	GCNNGC	5 cut(s)	16, 155, 669, 782, 1344
BstDEI	CTNAG	4 cut(s)	650, 887, 971, 1629
BstDSI	CCRYGG	1 cut(s)	2104
BstF5I	GGATG	8 cut(s)	301, 313, 409, 580, 1028, 1438, 1975, 2068
BstH2I	RGCGCY	3 cut(s)	138, 284, 412
BstHHI	GCGC	4 cut(s)	137, 283, 411, 509
BstKTI	GATC	8 cut(s)	373, 523, 565, 1108, 1678, 1745, 1966, 2049
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	8 cut(s)	370, 520, 562, 1105, 1675, 1742, 1963, 2046
BstMCI	CGRYCG	2 cut(s)	43, 64
BstNI	CCWGG	4 cut(s)	1139, 1476, 1719, 2117
BstNSI	RCATGY	3 cut(s)	671, 1161, 1430
BstSCI	CCNGG	5 cut(s)	351, 1137, 1474, 1717, 2115
BstSFI	CTRYAG	3 cut(s)	936, 1784, 2135
BstSLI	GKGCMC	1 cut(s)	1054
BstV1I	GCAGC	7 cut(s)	154, 467, 680, 962, 1003, 1581, 1798
BstX2I	RGATCY	2 cut(s)	520, 1675
BstXI	CCANNNNNNTGG	1 cut(s)	1891
BstYI	RGATCY	2 cut(s)	520, 1675
BstZ17I	GTATAC	1 cut(s)	904
BstZI	CGGCCG	1 cut(s)	40
Bsu15I	ATCGAT	2 cut(s)	924, 1353
BsuRI	GGCC	5 cut(s)	42, 351, 1150, 1382, 1546
BsuTUI	ATCGAT	2 cut(s)	924, 1353
BtgI	CCRYGG	1 cut(s)	2104
BtrI	CACGTC	1 cut(s)	560
BtsCI	GGATG	8 cut(s)	301, 313, 409, 580, 1028, 1438, 1975, 2068
BtsI	GCAGTG	2 cut(s)	15, 1781
BtsIMutI	CAGTG	4 cut(s)	15, 291, 480, 1781
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	5 cut(s)	16, 155, 669, 782, 1344
CciI	TCATGA	1 cut(s)	490
CfoI	GCGC	4 cut(s)	137, 283, 411, 509
Cfr10I	RCCGGY	1 cut(s)	1416
Cfr13I	GGNCC	6 cut(s)	25, 350, 1380, 1414, 1481, 1544
ClaI	ATCGAT	2 cut(s)	924, 1353
CseI	GACGC	2 cut(s)	152, 166
CsiI	ACCWGGT	1 cut(s)	1137
Csp6I	GTAC	3 cut(s)	213, 630, 1795
CspAI	ACCGGT	1 cut(s)	1416
CviQI	GTAC	3 cut(s)	213, 630, 1795
DdeI	CTNAG	4 cut(s)	650, 887, 971, 1629
DinI	GGCGCC	2 cut(s)	136, 282
DpnI	GATC	8 cut(s)	372, 522, 564, 1107, 1677, 1744, 1965, 2048
DpnII	GATC	8 cut(s)	370, 520, 562, 1105, 1675, 1742, 1963, 2046
DraI	TTTAAA	1 cut(s)	1503
EaeI	YGGCCR	2 cut(s)	40, 1148
EagI	CGGCCG	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	1811
EarI	CTCTTC	1 cut(s)	1811
Ecl136II	GAGCTC	2 cut(s)	18, 157
EclXI	CGGCCG	1 cut(s)	40
Eco130I	CCWWGG	2 cut(s)	2008, 2104
Eco24I	GRGCYC	3 cut(s)	20, 159, 1881
Eco32I	GATATC	2 cut(s)	769, 1210
Eco47I	GGWCC	3 cut(s)	25, 1414, 1481
Eco52I	CGGCCG	1 cut(s)	40
Eco53kI	GAGCTC	2 cut(s)	18, 157
Eco57I	CTGAAG	2 cut(s)	878, 2103
Eco72I	CACGTG	2 cut(s)	709, 947
Eco88I	CYCGRG	1 cut(s)	983
EcoICRI	GAGCTC	2 cut(s)	18, 157
EcoRI	GAATTC	1 cut(s)	1184
EcoRII	CCWGG	4 cut(s)	1137, 1474, 1717, 2115
EcoRV	GATATC	2 cut(s)	769, 1210
EcoT14I	CCWWGG	2 cut(s)	2008, 2104
EcoT22I	ATGCAT	3 cut(s)	438, 669, 1462
EcoT38I	GRGCYC	3 cut(s)	20, 159, 1881
EgeI	GGCGCC	2 cut(s)	136, 282
EheI	GGCGCC	2 cut(s)	136, 282
ErhI	CCWWGG	2 cut(s)	2008, 2104
Esp3I	CGTCTC	1 cut(s)	809
FaqI	GGGAC	2 cut(s)	1437, 1624
FauI	CCCGC	2 cut(s)	838, 958
FauNDI	CATATG	2 cut(s)	1264, 1338
FblI	GTMKAC	2 cut(s)	60, 903
FokI	GGATG	8 cut(s)	308, 320, 416, 587, 1035, 1445, 1982, 2075
FriOI	GRGCYC	3 cut(s)	20, 159, 1881
FspBI	CTAG	6 cut(s)	383, 459, 1127, 1179, 1520, 1673
GlaI	GCGC	4 cut(s)	136, 282, 410, 508
GsuI	CTGGAG	3 cut(s)	848, 854, 1038
HaeII	RGCGCY	3 cut(s)	138, 284, 412
HaeIII	GGCC	5 cut(s)	42, 351, 1150, 1382, 1546
HapII	CCGG	4 cut(s)	43, 353, 1417, 1621
HgaI	GACGC	2 cut(s)	152, 166
HhaI	GCGC	4 cut(s)	137, 283, 411, 509
Hin1I	GRCGYC	3 cut(s)	57, 135, 281
Hin6I	GCGC	4 cut(s)	135, 281, 409, 507
HinP1I	GCGC	4 cut(s)	135, 281, 409, 507
HincII	GTYRAC	5 cut(s)	61, 219, 760, 1236, 1666
HindII	GTYRAC	5 cut(s)	61, 219, 760, 1236, 1666
HinfI	GANTC	5 cut(s)	271, 932, 941, 1313, 1987
HpaI	GTTAAC	2 cut(s)	219, 760
HpaII	CCGG	4 cut(s)	43, 353, 1417, 1621
HphI	GGTGA	3 cut(s)	740, 1153, 1262
Hpy188I	TCNGA	4 cut(s)	1742, 1815, 2046, 2083
Hpy99I	CGWCG	9 cut(s)	35, 56, 59, 62, 104, 125, 128, 167, 182
HpyAV	CCTTC	6 cut(s)	125, 394, 527, 594, 1223, 2078
HpyCH4III	ACNGT	5 cut(s)	265, 484, 1615, 1904, 1940
HpyF3I	CTNAG	4 cut(s)	650, 887, 971, 1629
Hsp92I	GRCGYC	3 cut(s)	57, 135, 281
HspAI	GCGC	4 cut(s)	135, 281, 409, 507
KasI	GGCGCC	2 cut(s)	134, 280
KspAI	GTTAAC	2 cut(s)	219, 760
Kzo9I	GATC	8 cut(s)	370, 520, 562, 1105, 1675, 1742, 1963, 2046
LguI	GCTCTTC	1 cut(s)	1811
LmnI	GCTCC	4 cut(s)	162, 712, 829, 1743
Lsp1109I	GCAGC	7 cut(s)	154, 467, 680, 962, 1003, 1581, 1798
LweI	GCATC	9 cut(s)	865, 916, 978, 1447, 1469, 1666, 1695, 1960, 2050
MabI	ACCWGGT	1 cut(s)	1137
MaeI	CTAG	6 cut(s)	383, 459, 1127, 1179, 1520, 1673
MalI	GATC	8 cut(s)	372, 522, 564, 1107, 1677, 1744, 1965, 2048
MbiI	CCGCTC	2 cut(s)	201, 1385
MboI	GATC	8 cut(s)	370, 520, 562, 1105, 1675, 1742, 1963, 2046
MflI	RGATCY	2 cut(s)	520, 1675
MhlI	GDGCHC	4 cut(s)	20, 159, 1054, 1881
MlsI	TGGCCA	1 cut(s)	1150
MluNI	TGGCCA	1 cut(s)	1150
Mly113I	GGCGCC	2 cut(s)	135, 281
MlyI	GAGTC	2 cut(s)	280, 950
Mox20I	TGGCCA	1 cut(s)	1150
Mph1103I	ATGCAT	3 cut(s)	438, 669, 1462
MscI	TGGCCA	1 cut(s)	1150
MseI	TTAA	7 cut(s)	218, 249, 759, 1404, 1494, 1502, 2146
MslI	CAYNNNNRTG	4 cut(s)	1221, 1431, 1535, 2021
Msp20I	TGGCCA	1 cut(s)	1150
MspA1I	CMGCKG	1 cut(s)	693
MspI	CCGG	4 cut(s)	43, 353, 1417, 1621
MspR9I	CCNGG	5 cut(s)	353, 1139, 1476, 1719, 2117
Mva1269I	GAATGC	4 cut(s)	179, 474, 681, 2016
MvaI	CCWGG	4 cut(s)	1139, 1476, 1719, 2117
NarI	GGCGCC	2 cut(s)	135, 281
NciI	CCSGG	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	2104
NdeI	CATATG	2 cut(s)	1264, 1338
NdeII	GATC	8 cut(s)	370, 520, 562, 1105, 1675, 1742, 1963, 2046
NlaIV	GGNNCC	3 cut(s)	136, 282, 1483
NmeAIII	GCCGAG	2 cut(s)	18, 129
NmuCI	GTSAC	6 cut(s)	478, 942, 1250, 1898, 2030, 2139
NsiI	ATGCAT	3 cut(s)	438, 669, 1462
NspI	RCATGY	3 cut(s)	671, 1161, 1430
NspV	TTCGAA	1 cut(s)	1953
PaeI	GCATGC	1 cut(s)	671
PagI	TCATGA	1 cut(s)	490
PaqCI	CACCTGC	1 cut(s)	716
PciI	ACATGT	2 cut(s)	1157, 1426
PciSI	GCTCTTC	1 cut(s)	1811
PcsI	WCGNNNNNNNCGW	5 cut(s)	11, 96, 108, 117, 150
PctI	GAATGC	4 cut(s)	179, 474, 681, 2016
PfeI	GAWTC	3 cut(s)	932, 1313, 1987
PflFI	GACNNNGTC	1 cut(s)	56
PflMI	CCANNNNNTGG	3 cut(s)	787, 1607, 2105
PfoI	TCCNGGA	1 cut(s)	2115
PinAI	ACCGGT	1 cut(s)	1416
PleI	GAGTC	2 cut(s)	279, 949
PluTI	GGCGCC	2 cut(s)	138, 284
PmaCI	CACGTG	2 cut(s)	709, 947
PmlI	CACGTG	2 cut(s)	709, 947
PpsI	GAGTC	2 cut(s)	279, 949
Ppu21I	YACGTR	2 cut(s)	709, 947
PscI	ACATGT	2 cut(s)	1157, 1426
Psp124BI	GAGCTC	2 cut(s)	20, 159
Psp1406I	AACGTT	1 cut(s)	644
Psp6I	CCWGG	4 cut(s)	1137, 1474, 1717, 2115
PspCI	CACGTG	2 cut(s)	709, 947
PspGI	CCWGG	4 cut(s)	1137, 1474, 1717, 2115
PspN4I	GGNNCC	3 cut(s)	136, 282, 1483
PspPI	GGNCC	6 cut(s)	25, 350, 1380, 1414, 1481, 1544
PstI	CTGCAG	3 cut(s)	940, 1788, 2139
PsuI	RGATCY	2 cut(s)	520, 1675
PsyI	GACNNNGTC	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	693
RsaI	GTAC	3 cut(s)	214, 631, 1796
RsaNI	GTAC	3 cut(s)	213, 630, 1795
RseI	CAYNNNNRTG	4 cut(s)	1221, 1431, 1535, 2021
SacI	GAGCTC	2 cut(s)	20, 159
SalI	GTCGAC	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	1811
SaqAI	TTAA	7 cut(s)	218, 249, 759, 1404, 1494, 1502, 2146
Sau3AI	GATC	8 cut(s)	370, 520, 562, 1105, 1675, 1742, 1963, 2046
Sau96I	GGNCC	6 cut(s)	25, 350, 1380, 1414, 1481, 1544
SchI	GAGTC	2 cut(s)	280, 950
ScrFI	CCNGG	5 cut(s)	353, 1139, 1476, 1719, 2117
SduI	GDGCHC	4 cut(s)	20, 159, 1054, 1881
SexAI	ACCWGGT	1 cut(s)	1137
SfaNI	GCATC	9 cut(s)	865, 916, 978, 1447, 1469, 1666, 1695, 1960, 2050
SfcI	CTRYAG	3 cut(s)	936, 1784, 2135
SfoI	GGCGCC	2 cut(s)	136, 282
SfuI	TTCGAA	1 cut(s)	1953
SinI	GGWCC	3 cut(s)	25, 1414, 1481
SmiI	ATTTAAAT	1 cut(s)	1503
SmiMI	CAYNNNNRTG	4 cut(s)	1221, 1431, 1535, 2021
SmlI	CTYRAG	2 cut(s)	914, 1289
SmoI	CTYRAG	2 cut(s)	914, 1289
SphI	GCATGC	1 cut(s)	671
SsiI	CCGC	9 cut(s)	199, 268, 278, 498, 845, 965, 1383, 1528, 1708
SspDI	GGCGCC	2 cut(s)	134, 280
SspI	AATATT	2 cut(s)	702, 1866
SspMI	CTAG	6 cut(s)	383, 459, 1127, 1179, 1520, 1673
SstI	GAGCTC	2 cut(s)	20, 159
StyD4I	CCNGG	5 cut(s)	351, 1137, 1474, 1717, 2115
StyI	CCWWGG	2 cut(s)	2008, 2104
SwaI	ATTTAAAT	1 cut(s)	1503
TaaI	ACNGT	5 cut(s)	265, 484, 1615, 1904, 1940
TaqI	TCGA	8 cut(s)	60, 75, 111, 771, 924, 1353, 1872, 1953
TaqII	GACCGA	1 cut(s)	78
TatI	WGTACW	1 cut(s)	1794
TauI	GCSGC	4 cut(s)	201, 281, 1385, 1530
TfiI	GAWTC	3 cut(s)	932, 1313, 1987
Tru1I	TTAA	7 cut(s)	218, 249, 759, 1404, 1494, 1502, 2146
Tru9I	TTAA	7 cut(s)	218, 249, 759, 1404, 1494, 1502, 2146
TscAI	CASTG	4 cut(s)	15, 291, 487, 1788
TseFI	GTSAC	6 cut(s)	478, 942, 1250, 1898, 2030, 2139
TseI	GCWGC	7 cut(s)	167, 455, 693, 950, 991, 1594, 1786
Tsp45I	GTSAC	6 cut(s)	478, 942, 1250, 1898, 2030, 2139
TspDTI	ATGAA	7 cut(s)	910, 1100, 1101, 1205, 1211, 1339, 1449
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	4 cut(s)	15, 291, 487, 1788
Tth111I	GACNNNGTC	1 cut(s)	56
Van91I	CCANNNNNTGG	3 cut(s)	787, 1607, 2105
VpaK11BI	GGWCC	3 cut(s)	25, 1414, 1481
XapI	RAATTY	4 cut(s)	227, 1184, 1498, 1504
XceI	RCATGY	3 cut(s)	671, 1161, 1430
XmiI	GTMKAC	2 cut(s)	60, 903
XspI	CTAG	6 cut(s)	383, 459, 1127, 1179, 1520, 1673
ZraI	GACGTC	1 cut(s)	58
Zsp2I	ATGCAT	3 cut(s)	438, 669, 1462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.