Rorug06G0473500

ABC transporter F family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012968
Physical Location & Seq
Reverse (-)
59578290 .. 59579028
739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0473500.1

Sequence Viewer

Length: 591 bp
ATGCTGAAAGATTTACTGCAAGAGGATGAGAATGCCAAGTTTATATTGACGGGGCACAGCTTGGGCGCGGCGTTGGCGATTTTGTTTGCCGGGGTGCTAGCAATGCATGACTGTGAGTATGCCTGGTTGCTGGAGAGGTTGGAGGGGGTTTACACGTTCGGACAGCCTAGGGTTGGAGATGGGAAGTTTGGGGTGTTTATGAAGGAAAAGTTTAGGAAATATGATGTGAGATACATGAGGTATGTTTACAGCAATGACCTGGTGCCTAGAATACCTTATGATGATAAAGCCCTCATGTTCAAGCACTTCGGGTCAAGTCTTTACTATAACAGCTGCTATAGAGGAAAGGTTTTGAAGGAGGAACCCAACAAGAACTACTTTAGTTTGCTATGGTTCATACCTAGGAGGCTGAATGCAGTGTGGGAGTTGTTAAGGAGCTTCATACTCCCTTTGGTAAGGGGTTCAGACTACAAAGAGGGGTGGTTTATGAGATTTTGGAGGCTGGTGGGATTAGTAATTCCAGGATTGGCAGCCCAATGCTCCTCAAGATTACGTCAATCTTACAAGATTGGGAACCCTGCTTATTCCTAA

Protein Analysis

196

Amino Acids

22.96

Weight (kDa)

9.43

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 2 - 94 5.8e-23 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012968)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64550
fragaria_vesca FvH4_5g11480 FvH4_5g11480
malus_domestica MD06G1113200.v1.1 MD14G1134300.v1.1
prunus_persica Prupe.5G126100_v2.0.a1 Prupe.5G126100_v2.0.a1
pyrus_communis pycom06g10590
rosa_chinensis RchiOBHm_Chr7g0186321
rosa_laevigata RLG00000004849 RLG00000034878
rosa_multiflora Rmu_sc0000645.1_g000050
rosa_roxburghii Rroxscaffold_3G00268220
rosa_rugosa Rorug06G0473500
rosa_samantha Rh7AG067700 Rh7BG083500 Rh7CG080300
rosa_wichuraiana Rw7G006730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AccII CGCG 1 cut(s) 68
AciI CCGC 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 2 cut(s) 301, 355
AjnI CCWGG 3 cut(s) 122, 258, 520
AluBI AGCT 3 cut(s) 60, 333, 438
AluI AGCT 3 cut(s) 60, 333, 438
ApeKI GCWGC 2 cut(s) 333, 530
AspA2I CCTAGG 2 cut(s) 167, 401
AspLEI GCGC 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 91
AsuNHI GCTAGC 1 cut(s) 97
AvrII CCTAGG 2 cut(s) 167, 401
BaeGI GKGCMC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 320, 542
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 3 cut(s) 124, 260, 522
BcnI CCSGG 1 cut(s) 91
BfaI CTAG 4 cut(s) 98, 168, 267, 402
BfmI CTRYAG 1 cut(s) 337
BisI GCNGC 3 cut(s) 69, 334, 531
BlnI CCTAGG 2 cut(s) 167, 401
BlsI GCNGC 3 cut(s) 70, 335, 532
Bme1390I CCNGG 4 cut(s) 91, 124, 260, 522
BmiI GGNNCC 3 cut(s) 264, 363, 575
BmrFI CCNGG 4 cut(s) 91, 124, 260, 522
BmtI GCTAGC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 529
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 3 cut(s) 90, 167, 401
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse3DI GCAATG 2 cut(s) 108, 259
BseBI CCWGG 3 cut(s) 124, 260, 522
BseDI CCNNGG 3 cut(s) 90, 167, 401
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 2 cut(s) 108, 259
BseRI GAGGAG 1 cut(s) 532
BseSI GKGCMC 1 cut(s) 57
BseXI GCAGC 2 cut(s) 320, 542
Bsh1236I CGCG 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 262
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 1 cut(s) 173
BsmI GAATGC 2 cut(s) 37, 418
Bsp1286I GDGCHC 1 cut(s) 57
BspACI CCGC 1 cut(s) 68
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 3 cut(s) 264, 363, 575
BspOI GCTAGC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 262
BsrDI GCAATG 2 cut(s) 108, 259
BssECI CCNNGG 3 cut(s) 90, 167, 401
BssT1I CCWWGG 2 cut(s) 167, 401
Bst2UI CCWGG 3 cut(s) 124, 260, 522
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 68
BstHHI GCGC 1 cut(s) 68
BstMWI GCNNNNNNNGC 2 cut(s) 74, 103
BstNI CCWGG 3 cut(s) 124, 260, 522
BstSCI CCNGG 4 cut(s) 89, 122, 258, 520
BstSFI CTRYAG 1 cut(s) 337
BstSLI GKGCMC 1 cut(s) 57
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 320, 542
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 68
CsiI ACCWGGT 1 cut(s) 258
CviAII CATG 3 cut(s) 107, 235, 295
CviJI RGCY 8 cut(s) 60, 166, 290, 333, 409, 438, 502, 533
CviKI_1 RGCY 8 cut(s) 60, 166, 290, 333, 409, 438, 502, 533
Eco130I CCWWGG 2 cut(s) 167, 401
EcoRII CCWGG 3 cut(s) 122, 258, 520
EcoT14I CCWWGG 2 cut(s) 167, 401
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 2 cut(s) 167, 401
FaeI CATG 3 cut(s) 110, 238, 298
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FatI CATG 3 cut(s) 106, 234, 294
Fnu4HI GCNGC 3 cut(s) 69, 334, 531
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 3 cut(s) 69, 334, 531
FspBI CTAG 4 cut(s) 98, 168, 267, 402
GlaI GCGC 1 cut(s) 67
GluI GCNGC 3 cut(s) 69, 334, 531
GsuI CTGGAG 1 cut(s) 152
HapII CCGG 1 cut(s) 90
HhaI GCGC 1 cut(s) 68
Hin1II CATG 3 cut(s) 110, 238, 298
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HpaII CCGG 1 cut(s) 90
Hpy166II GTNNAC 2 cut(s) 151, 247
Hpy188I TCNGA 2 cut(s) 161, 466
Hpy188III TCNNGA 1 cut(s) 546
Hpy8I GTNNAC 2 cut(s) 151, 247
HpyAV CCTTC 2 cut(s) 196, 349
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 2 cut(s) 155, 553
HpyCH4V TGCA 3 cut(s) 19, 106, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 103
HpySE526I ACGT 2 cut(s) 155, 553
Hsp92II CATG 3 cut(s) 110, 238, 298
HspAI GCGC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 435, 545
LpnPI CCDG 9 cut(s) 103, 109, 116, 136, 245, 272, 488, 507, 534
Lsp1109I GCAGC 2 cut(s) 320, 542
MabI ACCWGGT 1 cut(s) 258
MaeI CTAG 4 cut(s) 98, 168, 267, 402
MaeII ACGT 2 cut(s) 155, 553
MhlI GDGCHC 1 cut(s) 57
MluCI AATT 1 cut(s) 516
MmeI TCCRAC 2 cut(s) 120, 154
Mph1103I ATGCAT 1 cut(s) 108
MseI TTAA 1 cut(s) 431
MslI CAYNNNNRTG 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 4 cut(s) 91, 124, 260, 522
Mva1269I GAATGC 2 cut(s) 37, 418
MvaI CCWGG 3 cut(s) 124, 260, 522
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 74, 103
NciI CCSGG 1 cut(s) 91
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 3 cut(s) 110, 238, 298
NlaIV GGNNCC 3 cut(s) 264, 363, 575
NsiI ATGCAT 1 cut(s) 108
PctI GAATGC 2 cut(s) 37, 418
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 3 cut(s) 70, 335, 532
Psp6I CCWGG 3 cut(s) 122, 258, 520
PspGI CCWGG 3 cut(s) 122, 258, 520
PspN4I GGNNCC 3 cut(s) 264, 363, 575
PvuII CAGCTG 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 111
SaqAI TTAA 1 cut(s) 431
SatI GCNGC 3 cut(s) 69, 334, 531
ScrFI CCNGG 4 cut(s) 91, 124, 260, 522
SduI GDGCHC 1 cut(s) 57
SexAI ACCWGGT 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 1 cut(s) 516
SsiI CCGC 1 cut(s) 68
SspMI CTAG 4 cut(s) 98, 168, 267, 402
StyD4I CCNGG 4 cut(s) 89, 122, 258, 520
StyI CCWWGG 2 cut(s) 167, 401
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 2 cut(s) 158, 556
TasI AATT 1 cut(s) 516
TauI GCSGC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TscAI CASTG 1 cut(s) 423
TseI GCWGC 2 cut(s) 333, 530
TspDTI ATGAA 3 cut(s) 215, 385, 430
TspRI CASTG 1 cut(s) 423
XmaJI CCTAGG 2 cut(s) 167, 401
XspI CTAG 4 cut(s) 98, 168, 267, 402
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.