Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014571

Physical Location & Seq

Genomic Coordinates Forward (+)

61403556 .. 61407157

Gene Structure 3602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1812 bp

ATGCCGGGATTAGTCTCCGTCAAAACCCCGCCGGGCTCGGTGCGGCTCCAAATCTCAGTCCCGGAGGCCCAGGCCCGGGCCCAAACGCAAAGATCCGACCCGGCCGCAATTTCCAAAACGCCGTCGCCGCTGGCCAAGAAGCCTCCCTCGCCTTCCGCCTCACGATCCCGGCCCTCGCCGAACCGCTTCAAGTCCAAATCACCTCAGCCGGAGAGTCCGAACCCGATTCTCGCCGACGCCTCGCTCGACAACCCGGATCTCGGCCCGTTCCTGCTGAAGCTGGCCAGGGACACAATCGCCTCCGGCGAAGGCCCGAACAAGGCGCTGGACTACGCCGTCCGGGCGGCCAAGTCGTTCGAGCGGTGCGCCGTCGACGGCGAGCCTAGCCTGGACCTGGTGATGAGTCTGCACGTGCTGGCGGCTATATACTGTAGCTTGGGCCGGTTCGAGGAGGCGGTTCCGGTTCTGGACCGGGCGATTCGGGTCCCCGAAGTCGGAAGAGGTGCAGATCACGCGCTGGCGGCGTTCTCTGGGCATATGCAGCTGGGGGACACGTACTCGATGCTGGGCCAAGTGGACCGGTCCATCGAATGCTACGAGGAGGGCTTGAAGATTCAGATCGAGGCCTTGGGTGACACTGATCCCAGAGTCGGTGAGACTTGCAGATATTTAGCTGAGGCTCATGTCCAAGCAATGCAGTTTGAAAGAGCTGAAGAATTGTGCAAGAAGACTCTTGAAATCCACCGTGCTCATAGTGAACCAGCATCTCTTGAGGAGGCAGCTGATCGCAGACTGATGGCTCTTATATGTGAGGCAAAGGGAGATTATGAAGCAGCACTTGAACACCTTGTCCTTGCTAGCATGGCAATGATTGCAAATGGACAAGAAAATGAGGTTGCTGCTATTGATGTCAGCATAGGAAACATTTACATGTCTCTTTGTCGCTTTGATGAGGCTGTCTTCTCCTATCAGAAGGCACTCACTGTTCTAAAGTCATCAAGGGGAGATAACCACCCTTCAGTTGCCTCCATCTTCGTACGCCTTGCTGACCTATATCATAAGACTGGAAAGCTCCGAGAGTCCAAATCGTATTGTGAGAATGCCTTGAGGATATATGTGAAACCTGTGCCTGGAACAACAGCAGAAGAGATTTCTGGTGGATTGACTGAGATTTCAGCTATTTATGAGTCCATGGATGAGCCAGAGGAGGCACTTAAGTTATTACAAAAGGCAATGAGTTTGTTAGAGGATAAACCTGGACAGCAAAGCACAATTGCTGGAATAGAAGCACGGATGGGAGTGATGTATTGCATGCTTGGGAGATATGAAGAAGCAAGGAGCTCTTTTGGAAGTGCTATAGCAAAACTTAGAGCTAGTGGAGAGAAGAAGTCTCCCTTCTTTGGGGTTGTGTTGAACCAGATGGGATTGGCTTGTGTTCAATTGTTCAAGATAGATGAGGCCGGTGAGTTGTTTGAAGAAGCGAGGAGAATATTAGAACAAGAGTGTGGTCCTTGTCATCAAGATACTCTTGGAGTGTATAGCAATCTTGCAGCTACCTATGATGCTATGGGGAGAGTTGAAGATGCAATTGAAATTTTGGAGTATGTGCTTAAATTGCGAGAAGAAAAGCTTGGAATTGCAAATCCTGATTTTGAAGATGAGAAGAGAAGACTATCCGAGCTCCTGAAAGAAGCAGGCAGGAAGCGAGACAAAAAAGCAAAATCATTGGAAAACCTCATTGATCCAAACTCGAAGAAGACTACGAAGAAAGAGGGGACGAGGAGGTGGGCTAGCCTGGGTTTCAGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002009 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005886 GO:0005929 GO:0006996 GO:0007275 GO:0007369 GO:0008150 GO:0009653 GO:0009790 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0015630 GO:0016020 GO:0016043 GO:0022603 GO:0022607 GO:0023051 GO:0023057 GO:0030030 GO:0030031 GO:0030111 GO:0030178 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044782 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048598 GO:0048729 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0060026 GO:0060027 GO:0060271 GO:0060429 GO:0060828 GO:0065007 GO:0070925 GO:0071840 GO:0071944 GO:0090090 GO:0090175 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120025 GO:0120031 GO:0120036 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000095

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_10 TPR_12 TPR_8

Protein Analysis

603

Amino Acids

66.15

Weight (kDa)

5.72

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_12	PF13424	135 - 206	4.3e-08	Tetratricopeptide repeat
TPR_MalT	PF17874	137 - 288	6.3e-10	MalT-like TPR region
TPR_12	PF13424	180 - 240	5.4e-06	Tetratricopeptide repeat
TPR_12	PF13424	224 - 283	8.2e-06	Tetratricopeptide repeat
TPR_MalT	PF17874	266 - 418	8.8e-09	MalT-like TPR region
TPR_NPHP3	PF24885	293 - 425	2.3e-09	Nephrocystin-3 TPR domain
TPR_12	PF13424	299 - 372	9.6e-11	Tetratricopeptide repeat
TPR_12	PF13424	341 - 416	1.8e-08	Tetratricopeptide repeat
TPR_12	PF13424	428 - 500	5.8e-08	Tetratricopeptide repeat
TPR_12	PF13424	470 - 542	9e-11	Tetratricopeptide repeat
TPR_10	PF13374	509 - 550	2.5e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10840
fragaria_vesca	FvH4_5g11550 FvH4_5g11550 FvH4_5g11550
malus_domestica	MD06G1112100.v1.1 MD14G1133500.v1.1
prunus_persica	Prupe.5G125200_v2.0.a1
pyrus_communis	pycom06g10510
rosa_chinensis	RchiOBHm_Chr7g0186201
rosa_laevigata	RLG00000004856
rosa_multiflora	Rmu_sc0002609.1_g000006
rosa_roxburghii	Rroxscaffold_3G00268320
rosa_rugosa	Rorug06G0472700
rosa_samantha	Rh7BG084400 Rh7CG079400 Rh7DG079900
rosa_wichuraiana	Rw7G006640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	335
AccBSI	CCGCTC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	1 cut(s)	515
AclWI	GGATC	5 cut(s)	87, 159, 264, 635, 1736
AcoI	YGGCCR	4 cut(s)	102, 132, 282, 345
AcsI	RAATTY	1 cut(s)	1593
AcuI	CTGAAG	3 cut(s)	296, 732, 1002
AcvI	CACGTG	1 cut(s)	412
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	2 cut(s)	557, 1038
AflII	CTTAAG	1 cut(s)	1214
AflIII	ACRYGT	2 cut(s)	552, 930
AgeI	ACCGGT	1 cut(s)	579
AjnI	CCWGG	7 cut(s)	69, 284, 387, 393, 1129, 1255, 1794
AjuI	GAANNNNNNNTTGG	2 cut(s)	1614, 1646
AloI	GAACNNNNNNTCC	2 cut(s)	834, 866
Alw21I	GWGCWC	3 cut(s)	751, 1343, 1683
Alw26I	GTCTC	5 cut(s)	19, 650, 939, 1395, 1701
AlwI	GGATC	5 cut(s)	87, 159, 264, 635, 1736
Ama87I	CYCGRG	1 cut(s)	75
ApaI	GGGCCC	1 cut(s)	82
ApeKI	GCWGC	5 cut(s)	541, 779, 833, 899, 1550
ApoI	RAATTY	1 cut(s)	1593
AsiGI	ACCGGT	1 cut(s)	579
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	3 cut(s)	325, 368, 517
AsuHPI	GGTGA	5 cut(s)	192, 409, 644, 665, 1475
AsuNHI	GCTAGC	2 cut(s)	857, 1790
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	6 cut(s)	391, 469, 484, 577, 582, 1508
BaeGI	GKGCMC	1 cut(s)	82
BalI	TGGCCA	2 cut(s)	134, 284
BanII	GRGCYC	4 cut(s)	38, 82, 1343, 1683
BbrPI	CACGTG	1 cut(s)	412
BbsI	GAAGAC	4 cut(s)	734, 952, 1675, 1763
Bbv12I	GWGCWC	3 cut(s)	751, 1343, 1683
BbvCI	CCTCAGC	2 cut(s)	204, 675
BbvI	GCAGC	5 cut(s)	553, 791, 845, 886, 1562
BccI	CCATC	5 cut(s)	593, 790, 1037, 1288, 1414
BceAI	ACGGC	4 cut(s)	106, 320, 353, 391
BciT130I	CCWGG	7 cut(s)	71, 286, 389, 395, 1131, 1257, 1796
BcoDI	GTCTC	5 cut(s)	19, 650, 939, 1395, 1701
BfaI	CTAG	4 cut(s)	384, 858, 1374, 1791
BfmI	CTRYAG	2 cut(s)	430, 1356
BfoI	RGCGCY	1 cut(s)	326
BfrI	CTTAAG	1 cut(s)	1214
BglI	GCCNNNNNGGC	1 cut(s)	341
Bme18I	GGWCC	6 cut(s)	391, 469, 484, 577, 582, 1508
BmeT110I	CYCGRG	1 cut(s)	75
BmiI	GGNNCC	5 cut(s)	47, 80, 459, 485, 486
BmsI	GCATC	4 cut(s)	552, 773, 1552, 1573
BmtI	GCTAGC	2 cut(s)	861, 1794
BpiI	GAAGAC	4 cut(s)	734, 952, 1675, 1763
Bpu10I	CCTNAGC	2 cut(s)	204, 675
BpuEI	CTTGAG	2 cut(s)	791, 1126
BsaAI	YACGTR	2 cut(s)	412, 555
BsaBI	GATNNNNATC	1 cut(s)	617
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	6 cut(s)	69, 75, 285, 627, 1191, 1795
BsaWI	WCCGGW	2 cut(s)	460, 579
Bse118I	RCCGGY	3 cut(s)	441, 579, 1460
Bse1I	ACTGG	1 cut(s)	1069
Bse3DI	GCAATG	3 cut(s)	699, 873, 1239
Bse8I	GATNNNNATC	1 cut(s)	617
BseBI	CCWGG	7 cut(s)	71, 286, 389, 395, 1131, 1257, 1796
BseDI	CCNNGG	6 cut(s)	69, 75, 285, 627, 1191, 1795
BseGI	GGATG	2 cut(s)	1201, 1299
BseJI	GATNNNNATC	1 cut(s)	617
BseMI	GCAATG	3 cut(s)	699, 873, 1239
BseMII	CTCAG	4 cut(s)	69, 218, 666, 1158
BseNI	ACTGG	1 cut(s)	1069
BseRI	GAGGAG	6 cut(s)	464, 614, 788, 1220, 1498, 1795
BseSI	GKGCMC	1 cut(s)	82
BseX3I	CGGCCG	1 cut(s)	102
BseXI	GCAGC	5 cut(s)	553, 791, 845, 886, 1562
BseYI	CCCAGC	2 cut(s)	544, 565
BsgI	GTGCAG	2 cut(s)	392, 525
Bsh1236I	CGCG	1 cut(s)	515
Bsh1285I	CGRYCG	1 cut(s)	105
BshTI	ACCGGT	1 cut(s)	579
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	3 cut(s)	751, 1343, 1683
BsiHKCI	CYCGRG	1 cut(s)	75
BsiWI	CGTACG	1 cut(s)	1036
BslFI	GGGAC	5 cut(s)	44, 302, 470, 563, 1789
BsmAI	GTCTC	5 cut(s)	19, 650, 939, 1395, 1701
BsmFI	GGGAC	5 cut(s)	44, 302, 470, 563, 1789
BsmI	GAATGC	2 cut(s)	596, 1105
BsoBI	CYCGRG	1 cut(s)	75
Bsp120I	GGGCCC	1 cut(s)	78
Bsp1286I	GDGCHC	5 cut(s)	38, 82, 751, 1343, 1683
Bsp143I	GATC	8 cut(s)	92, 164, 256, 508, 618, 640, 784, 1741
Bsp19I	CCATGG	1 cut(s)	1191
BspCNI	CTCAG	4 cut(s)	68, 217, 667, 1159
BspFNI	CGCG	1 cut(s)	515
BspLI	GGNNCC	5 cut(s)	47, 80, 459, 485, 486
BspOI	GCTAGC	2 cut(s)	861, 1794
BspPI	GGATC	5 cut(s)	87, 159, 264, 635, 1736
BspTI	CTTAAG	1 cut(s)	1214
BsrBI	CCGCTC	1 cut(s)	361
BsrDI	GCAATG	3 cut(s)	699, 873, 1239
BsrFI	RCCGGY	3 cut(s)	441, 579, 1460
BsrI	ACTGG	1 cut(s)	1069
BssAI	RCCGGY	3 cut(s)	441, 579, 1460
BssECI	CCNNGG	6 cut(s)	69, 75, 285, 627, 1191, 1795
BssMI	GATC	8 cut(s)	92, 164, 256, 508, 618, 640, 784, 1741
BssNI	GRCGYC	1 cut(s)	237
BssT1I	CCWWGG	2 cut(s)	627, 1191
Bst2UI	CCWGG	7 cut(s)	71, 286, 389, 395, 1131, 1257, 1796
Bst4CI	ACNGT	3 cut(s)	431, 746, 985
Bst6I	CTCTTC	3 cut(s)	493, 1140, 1658
BstACI	GRCGYC	1 cut(s)	237
BstAFI	CTTAAG	1 cut(s)	1214
BstAPI	GCANNNNNTGC	1 cut(s)	872
BstBAI	YACGTR	2 cut(s)	412, 555
BstC8I	GCNNGC	9 cut(s)	132, 282, 380, 417, 519, 859, 1313, 1696, 1792
BstDEI	CTNAG	5 cut(s)	55, 204, 675, 1167, 1367
BstDSI	CCRYGG	1 cut(s)	1191
BstF5I	GGATG	2 cut(s)	1201, 1299
BstFNI	CGCG	1 cut(s)	515
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	3 cut(s)	325, 368, 517
BstKTI	GATC	8 cut(s)	95, 167, 259, 511, 621, 643, 787, 1744
BstMAI	GTCTC	5 cut(s)	19, 650, 939, 1395, 1701
BstMBI	GATC	8 cut(s)	92, 164, 256, 508, 618, 640, 784, 1741
BstMCI	CGRYCG	1 cut(s)	105
BstNI	CCWGG	7 cut(s)	71, 286, 389, 395, 1131, 1257, 1796
BstNSI	RCATGY	2 cut(s)	934, 1315
BstSFI	CTRYAG	2 cut(s)	430, 1356
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	515
BstV1I	GCAGC	5 cut(s)	553, 791, 845, 886, 1562
BstV2I	GAAGAC	4 cut(s)	734, 952, 1675, 1763
BstX2I	RGATCY	2 cut(s)	92, 256
BstYI	RGATCY	2 cut(s)	92, 256
BstZI	CGGCCG	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	1191
BtsCI	GGATG	2 cut(s)	1201, 1299
BtsIMutI	CAGTG	2 cut(s)	636, 981
Cac8I	GCNNGC	9 cut(s)	132, 282, 380, 417, 519, 859, 1313, 1696, 1792
CfoI	GCGC	3 cut(s)	325, 368, 517
Cfr10I	RCCGGY	3 cut(s)	441, 579, 1460
Cfr9I	CCCGGG	1 cut(s)	75
CseI	GACGC	1 cut(s)	245
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	556, 1037
CspAI	ACCGGT	1 cut(s)	579
CviAII	CATG	5 cut(s)	683, 862, 931, 1192, 1312
CviQI	GTAC	2 cut(s)	556, 1037
DdeI	CTNAG	5 cut(s)	55, 204, 675, 1167, 1367
DpnI	GATC	8 cut(s)	94, 166, 258, 510, 620, 642, 786, 1743
DpnII	GATC	8 cut(s)	92, 164, 256, 508, 618, 640, 784, 1741
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	4 cut(s)	102, 132, 282, 345
EagI	CGGCCG	1 cut(s)	102
Eam1104I	CTCTTC	3 cut(s)	493, 1140, 1658
EarI	CTCTTC	3 cut(s)	493, 1140, 1658
EciI	GGCGGA	1 cut(s)	145
Ecl136II	GAGCTC	2 cut(s)	1341, 1681
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	2 cut(s)	627, 1191
Eco147I	AGGCCT	1 cut(s)	626
Eco24I	GRGCYC	4 cut(s)	38, 82, 1343, 1683
Eco47I	GGWCC	6 cut(s)	391, 469, 484, 577, 582, 1508
Eco52I	CGGCCG	1 cut(s)	102
Eco53kI	GAGCTC	2 cut(s)	1341, 1681
Eco57I	CTGAAG	3 cut(s)	296, 732, 1002
Eco72I	CACGTG	1 cut(s)	412
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	2 cut(s)	1341, 1681
EcoO109I	RGGNCCY	1 cut(s)	484
EcoRII	CCWGG	7 cut(s)	69, 284, 387, 393, 1129, 1255, 1794
EcoT14I	CCWWGG	2 cut(s)	627, 1191
EcoT38I	GRGCYC	4 cut(s)	38, 82, 1343, 1683
ErhI	CCWWGG	2 cut(s)	627, 1191
FaeI	CATG	5 cut(s)	686, 865, 934, 1195, 1315
FaqI	GGGAC	5 cut(s)	44, 302, 470, 563, 1789
FatI	CATG	5 cut(s)	682, 861, 930, 1191, 1311
FauI	CCCGC	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	537
FblI	GTMKAC	1 cut(s)	372
FokI	GGATG	2 cut(s)	1208, 1306
FriOI	GRGCYC	4 cut(s)	38, 82, 1343, 1683
FspBI	CTAG	4 cut(s)	384, 858, 1374, 1791
GlaI	GCGC	3 cut(s)	324, 367, 516
GsaI	CCCAGC	2 cut(s)	548, 569
HaeII	RGCGCY	1 cut(s)	326
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	3 cut(s)	325, 368, 517
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	5 cut(s)	686, 865, 934, 1195, 1315
Hin6I	GCGC	3 cut(s)	323, 366, 515
HinP1I	GCGC	3 cut(s)	323, 366, 515
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	1628
HinfI	GANTC	9 cut(s)	214, 226, 403, 478, 613, 648, 730, 1079, 1187
HphI	GGTGA	5 cut(s)	192, 409, 644, 665, 1475
Hpy166II	GTNNAC	3 cut(s)	373, 577, 758
Hpy188I	TCNGA	8 cut(s)	97, 219, 497, 618, 972, 1076, 1678, 1805
Hpy188III	TCNNGA	8 cut(s)	162, 467, 734, 770, 1447, 1520, 1646, 1684
Hpy8I	GTNNAC	3 cut(s)	373, 577, 758
Hpy99I	CGWCG	4 cut(s)	127, 239, 374, 377
HpyAV	CCTTC	5 cut(s)	162, 302, 967, 1026, 1405
HpyCH4III	ACNGT	3 cut(s)	431, 746, 985
HpyCH4IV	ACGT	2 cut(s)	411, 554
HpyF3I	CTNAG	5 cut(s)	55, 204, 675, 1167, 1367
HpySE526I	ACGT	2 cut(s)	411, 554
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	5 cut(s)	686, 865, 934, 1195, 1315
HspAI	GCGC	3 cut(s)	323, 366, 515
KflI	GGGWCCC	1 cut(s)	484
Kzo9I	GATC	8 cut(s)	92, 164, 256, 508, 618, 640, 784, 1741
LmnI	GCTCC	4 cut(s)	51, 1077, 1338, 1686
Lsp1109I	GCAGC	5 cut(s)	553, 791, 845, 886, 1562
LweI	GCATC	4 cut(s)	552, 773, 1552, 1573
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	4 cut(s)	384, 858, 1374, 1791
MaeII	ACGT	2 cut(s)	411, 554
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	8 cut(s)	94, 166, 258, 510, 620, 642, 786, 1743
MbiI	CCGCTC	1 cut(s)	361
MboI	GATC	8 cut(s)	92, 164, 256, 508, 618, 640, 784, 1741
MfeI	CAATTG	3 cut(s)	1272, 1439, 1587
MflI	RGATCY	2 cut(s)	92, 256
MhlI	GDGCHC	5 cut(s)	38, 82, 751, 1343, 1683
MlsI	TGGCCA	2 cut(s)	134, 284
MluCI	AATT	8 cut(s)	108, 716, 1272, 1439, 1587, 1593, 1613, 1635
MluNI	TGGCCA	2 cut(s)	134, 284
MlyI	GAGTC	6 cut(s)	223, 412, 657, 724, 1088, 1196
MmeI	TCCRAC	2 cut(s)	120, 475
Mox20I	TGGCCA	2 cut(s)	134, 284
MroXI	GAANNNNTTC	1 cut(s)	185
MscI	TGGCCA	2 cut(s)	134, 284
MseI	TTAA	2 cut(s)	1215, 1611
MslI	CAYNNNNRTG	2 cut(s)	866, 929
Msp20I	TGGCCA	2 cut(s)	134, 284
MspA1I	CMGCKG	3 cut(s)	130, 544, 782
MspCI	CTTAAG	1 cut(s)	1214
MunI	CAATTG	3 cut(s)	1272, 1439, 1587
Mva1269I	GAATGC	2 cut(s)	596, 1105
MvaI	CCWGG	7 cut(s)	71, 286, 389, 395, 1131, 1257, 1796
MvnI	CGCG	1 cut(s)	515
NcoI	CCATGG	1 cut(s)	1191
NdeI	CATATG	1 cut(s)	537
NdeII	GATC	8 cut(s)	92, 164, 256, 508, 618, 640, 784, 1741
NheI	GCTAGC	2 cut(s)	857, 1790
NlaIII	CATG	5 cut(s)	686, 865, 934, 1195, 1315
NlaIV	GGNNCC	5 cut(s)	47, 80, 459, 485, 486
NmeAIII	GCCGAG	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	632
NspI	RCATGY	2 cut(s)	934, 1315
PaeI	GCATGC	1 cut(s)	1315
PceI	AGGCCT	1 cut(s)	626
PciI	ACATGT	1 cut(s)	930
PcsI	WCGNNNNNNNCGW	3 cut(s)	243, 303, 594
PctI	GAATGC	2 cut(s)	596, 1105
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	3 cut(s)	226, 478, 613
Pfl23II	CGTACG	1 cut(s)	1036
PfoI	TCCNGGA	1 cut(s)	60
PinAI	ACCGGT	1 cut(s)	579
PleI	GAGTC	6 cut(s)	222, 411, 656, 724, 1087, 1195
PmaCI	CACGTG	1 cut(s)	412
PmlI	CACGTG	1 cut(s)	412
PpsI	GAGTC	6 cut(s)	222, 411, 656, 724, 1087, 1195
Ppu21I	YACGTR	2 cut(s)	412, 555
PpuMI	RGGWCCY	1 cut(s)	484
PscI	ACATGT	1 cut(s)	930
Psp124BI	GAGCTC	2 cut(s)	1343, 1683
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	7 cut(s)	69, 284, 387, 393, 1129, 1255, 1794
PspCI	CACGTG	1 cut(s)	412
PspFI	CCCAGC	2 cut(s)	544, 565
PspGI	CCWGG	7 cut(s)	69, 284, 387, 393, 1129, 1255, 1794
PspLI	CGTACG	1 cut(s)	1036
PspN4I	GGNNCC	5 cut(s)	47, 80, 459, 485, 486
PspOMI	GGGCCC	1 cut(s)	78
PspPPI	RGGWCCY	1 cut(s)	484
PsuI	RGATCY	2 cut(s)	92, 256
PvuII	CAGCTG	2 cut(s)	544, 782
RsaI	GTAC	2 cut(s)	557, 1038
RsaNI	GTAC	2 cut(s)	556, 1037
RseI	CAYNNNNRTG	2 cut(s)	866, 929
SacI	GAGCTC	2 cut(s)	1343, 1683
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	2 cut(s)	1215, 1611
Sau3AI	GATC	8 cut(s)	92, 164, 256, 508, 618, 640, 784, 1741
SchI	GAGTC	6 cut(s)	223, 412, 657, 724, 1088, 1196
SduI	GDGCHC	5 cut(s)	38, 82, 751, 1343, 1683
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	4 cut(s)	552, 773, 1552, 1573
SfcI	CTRYAG	2 cut(s)	430, 1356
SgrDI	CGTCGACG	1 cut(s)	371
SinI	GGWCC	6 cut(s)	391, 469, 484, 577, 582, 1508
SmaI	CCCGGG	1 cut(s)	77
SmiMI	CAYNNNNRTG	2 cut(s)	866, 929
SmlI	CTYRAG	3 cut(s)	770, 1105, 1214
SmoI	CTYRAG	3 cut(s)	770, 1105, 1214
SphI	GCATGC	1 cut(s)	1315
SrfI	GCCCGGGC	1 cut(s)	77
Sse9I	AATT	8 cut(s)	108, 716, 1272, 1439, 1587, 1593, 1613, 1635
SseBI	AGGCCT	1 cut(s)	626
SspI	AATATT	1 cut(s)	1491
SspMI	CTAG	4 cut(s)	384, 858, 1374, 1791
SstI	GAGCTC	2 cut(s)	1343, 1683
StuI	AGGCCT	1 cut(s)	626
StyI	CCWWGG	2 cut(s)	627, 1191
TaaI	ACNGT	3 cut(s)	431, 746, 985
TaiI	ACGT	2 cut(s)	414, 557
TaqI	TCGA	8 cut(s)	246, 357, 372, 447, 560, 588, 621, 1751
TasI	AATT	8 cut(s)	108, 716, 1272, 1439, 1587, 1593, 1613, 1635
TauI	GCSGC	6 cut(s)	46, 107, 130, 347, 422, 524
TfiI	GAWTC	3 cut(s)	226, 478, 613
Tru1I	TTAA	2 cut(s)	1215, 1611
Tru9I	TTAA	2 cut(s)	1215, 1611
TscAI	CASTG	2 cut(s)	643, 988
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	5 cut(s)	541, 779, 833, 899, 1550
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	2 cut(s)	843, 1341
TspGWI	ACGGA	2 cut(s)	7, 1306
TspMI	CCCGGG	1 cut(s)	75
TspRI	CASTG	2 cut(s)	643, 988
Vha464I	CTTAAG	1 cut(s)	1214
VpaK11BI	GGWCC	6 cut(s)	391, 469, 484, 577, 582, 1508
XapI	RAATTY	1 cut(s)	1593
XceI	RCATGY	2 cut(s)	934, 1315
XmaI	CCCGGG	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	372
XmnI	GAANNNNTTC	1 cut(s)	185
XspI	CTAG	4 cut(s)	384, 858, 1374, 1791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.