Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010077

Physical Location & Seq

Genomic Coordinates Reverse (-)

61561036 .. 61566105

Gene Structure 5070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2943 bp

ATGACGGTCAGAACTCCTGGAACCCCAGCTTCAAAAATTGACAAGACACCAGTGGCAACTCCAGCTTCGAAAATCGAGAGGACACCAGTGTCAACTCCAGGAGGGCCGAGAGCTAAGGAAGAGAAGATTGTTGTTACGGTGCGTTTGAGGCCTCTGAGCAAAAGGGAGCAATTGGCAAAAGACCAAGTTGCATGGGAATGCATCGATGATAACACCATTGTATCGAAACCTGTGGACCGCTCAACTCAACAGGCCTCATTTACATTTGATAAAGTTTTCGGTCCAAATAGTATAACCGACACTGTATATGAGGAAGGAGTGAAGAATGTTGCCTTGTCTTCTTTGATGGGCATCAATGCTACTATATTTGCTTATGGACAAACTAGCAGTGGGAAGACGTACACAATGCGAGGAATAACAGAGAAAGCTGTCATTGATATCTACAACCATATAATGAATACTCCAGAGAGAGATTTTAGAATAAAAATCTCCGGACTTGAAATATACAATGAGAATGTCAAGGACCTCTTAAATGCTGAATCTGGTCGTAATCTAAAGCTTCTAGATGATCCAGAGAAAGGTACTGTGGTTGAGAAACTGGTGGAGGAAACTGCAAGCAATGATCAGCACTTGAGACACTTAATCAGCATTTGTGAAGCTCAAAGACAAGTTGGTGAAACAGCTTTAAATGATAATAGCTCACGGTCACATCAGATAATAAGGCTGACAATTGAAAGTACACTCCGTGAAAATTCAGATTGCGTGAGATCTTTTGTTGCAAGCCTGAACTTTGTAGATTTGGCTGGAAGTGAACGAGCTTCACAGACACATGCAGATGGTGCTAGGCTAAGGGAAGGTTGCCATATCAACCTTAGCCTGATGACACTTACAACTGTTATCAGAAAGCTCAGTGTTGGAAAAAGAAGTGGCCATATACCCTACAGAGACTCAAAGCTCACTCGCATATTGCAGCATTCTCTTGGTGGGAATGCACGCACTGCTATCATATGTACCTTGAGTCCAGCAATGAGTCATCTTGAACAATCTCGGAATACTCTTTACTTTGCCACCAGGGCAAAGGAAGTCACAAATAATGCACACGTGAACATGGTTGTTTCGGACAAGCAACTGGTGAAACATTTGCAGAAGGAAGTAGCTAGGCTGGAAGCAGAGCTGCGCACCCCTGCCACCCCAGATCCATCGAGTGAAAAAGATTTGAAAATTCAGCAGATGGAAATGGAAATTGAAGAATTGAAACGCCAGAGAGATATTGCTCAATCTCAAGTAATTGAACTACGCCAAAAGCTCAAGGAGGATCCGCAGGTTTCAAATCCATTGGAATTACCCCATCCTTCAGTGACTTCAGTGAAGAAATGTCTCTCCTACACTGGTGTTCTATCAACAAAACTTGATGGCAAGGAGCTAGGCCGTGGTGATAAAGCAAGAAATATAAAGTTGAGGCAGTCTATGAGGCAATCATCAGCTGCTCCTTTTACACTAATGCACGAAATCCGCAAACTTGAGCACCTGCAAGAGCAGCTAGGAGATGAAGCAAATCGAGCCCTGGAAGTATTACAAAAGGAGGTGGCTTGTCATAGACTAGGCAACCAAGATGCAGCTGAAACAATTGCTAACCTGCAAGCAGAAATAAGAGAAATGCAGTCAGTAAGATCAGTGCCAAAAGATGTTGATGTTGGAACTGTGGTTGCTACCAACAAGAGTGTCAGTGCTAATCTAAAGGAGGAGATCACAAGACTTCATTCACAGGGCACCACTATTGCAAATCTTGAGGAACAGCTTGAAAGTGTGCAGAAGTCTATAGATAAATTGGTGATGTCTCTTCCTAGCAATTTTGAACAATGCAATAATGAAGCATTCACCAAGTCTAAGAAGGAGTCCAAAAAGAAAAAGTTATCACCTTTAGCTTCAAGCAACGCTGCCAACCTGCCAAATTTTATCAGATCACCTTGCTCACCTCTATCAGCTTCTCGTCAAATTGTAGAGTCTGATGAAATTGAAAATAGAGTTCCTGAACATGATGATACTTTGTTCAGTGATACCCAACCAGAGTCTGATAAGGGGACTCCCACAAAGAGTGAAGATTGTGGAGATGTTTCGTCAAAGGAAAACACTCCATATAGGCCTTCTAGTTCGGTAAACATGAAGAAAATGCAGAAGATGTTCCAAAATGCAGCAGAAGAGAATGTAAGAAGCATAAGAACATATGTAACAGAGCTCAAAGAGCGGGTGGCCAAACTGCAGTACCAAAAGCAACTTCTAGTCTGCCAGGTTTTGGAGCTGGAAGCAAACGAAGCAGCTGGGTATGATATGGAGAATGATGAAATCACATGCGAGCCAGAGGAGCCCCAGGTCCCATGGCAGATAACTTTCAAGGATCAAAGGCAGCAAATCATTGAGTTATGGGATTTGTGCTATGTCTCTATCATCCATAGGACACAGTTTTATTTGTTATTCAAGGGAGATCCAGCTGATCAAATCTATATGGAAGTGGAGCTCAGGCGATTGACATGGTTGCAAGAGCATCTGGCAGAACTTGGTAATGCTAGCCCTGCTCCTCATGTGGGAGACGAGCCAGCAGTCTCTTTGTCATCAAGTATCCGAGCACTAAGGCGTGAAAGGGAGTTCCTTGCCAAGAGGGTAACCTCACGTTTGAGCGCAGAGGAGAGAGATGCATTGTACATCAAGTGGGATGTTCCACTCGAAGGGAAGCAGAGGAGGATGCAGTTTGTGAATAAGCTCTGGACCGACCCTCATGATGCCAAGCATATACAGGAGAGTGCTGAGATAGTTGCAAAGCTTGTTGGTTTCTGCGAAAGCGGCAACATGCCGAAGGAGATGTTTGAGCTGAATTTTGCACTTCCATCTGATAGGAGGCCATGGATTATGGGATGGAACCCAATTTCAAACCTTCTTAACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000775 GO:0000910 GO:0000911 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007275 GO:0007349 GO:0008150 GO:0009524 GO:0009553 GO:0009555 GO:0009558 GO:0009561 GO:0009653 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0032501 GO:0032502 GO:0032506 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043515 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0048229 GO:0048285 GO:0048646 GO:0048856 GO:0051225 GO:0051301 GO:0061640 GO:0070925 GO:0071840 GO:0090307 GO:0098687 GO:0140014 GO:1902410 GO:1902850 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3490 Kinesin

Protein Analysis

980

Amino Acids

110.39

Weight (kDa)

6.48

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	45 - 177	1.7e-21	Microtubule binding
Kinesin	PF00225	48 - 362	7.6e-100	Kinesin motor domain
DUF3490	PF11995	797 - 960	8.7e-73	Domain of unknown function (DUF3490)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18370
fragaria_vesca	FvH4_5g11710 FvH4_5g11710 FvH4_5g11710 FvH4_5g11710
malus_domestica	MD06G1219700.v1.1 MD14G1229400.v1.1
prunus_persica	Prupe.5G224200_v2.0.a1
pyrus_communis	pycom06g19610 pycom14g19070
rosa_chinensis	RchiOBHm_Chr7g0186051
rosa_laevigata	RLG00000004869
rosa_multiflora	Rmu_co8507379.1_g000001 Rmu_sc0000194.1_g000022
rosa_roxburghii	Rroxscaffold_3G00268470
rosa_rugosa	Rorug06G0471900
rosa_samantha	Rh7AG070000 Rh7BG086000 Rh7CG078300 Rh7DG078300
rosa_wichuraiana	Rw7G006510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1536
AasI	GACNNNNNNGTC	1 cut(s)	88
Acc16I	TGCGCA	1 cut(s)	1178
Acc36I	ACCTGC	4 cut(s)	1312, 1536, 1644, 1953
AccB1I	GGYRCC	1 cut(s)	1769
AccB7I	CCANNNNNTGG	1 cut(s)	2293
AccBSI	CCGCTC	2 cut(s)	240, 2245
AccIII	TCCGGA	1 cut(s)	491
AciI	CCGC	5 cut(s)	238, 1319, 1513, 2245, 2838
AclWI	GGATC	6 cut(s)	563, 1190, 1310, 1323, 2403, 2477
AcoI	YGGCCR	2 cut(s)	928, 2250
AcsI	RAATTY	4 cut(s)	751, 1221, 1951, 2869
AcuI	CTGAAG	2 cut(s)	1338, 1347
AcvI	CACGTG	1 cut(s)	1102
AdeI	CACNNNGTG	1 cut(s)	746
AfaI	GTAC	6 cut(s)	401, 583, 739, 1012, 2264, 2699
AfiI	CCNNNNNNNGG	4 cut(s)	578, 2293, 2582, 2723
AflIII	ACRYGT	2 cut(s)	1099, 2937
AjnI	CCWGG	6 cut(s)	16, 97, 1070, 1563, 2286, 2367
AjuI	GAANNNNNNNTTGG	2 cut(s)	2259, 2291
Alw21I	GWGCWC	4 cut(s)	1527, 2238, 2517, 2626
Alw26I	GTCTC	7 cut(s)	628, 939, 1382, 1842, 2443, 2580, 2605
AlwI	GGATC	6 cut(s)	563, 1190, 1310, 1323, 2403, 2477
AlwNI	CAGNNNCTG	1 cut(s)	2072
Aor13HI	TCCGGA	1 cut(s)	491
AoxI	GGCC	8 cut(s)	104, 149, 252, 928, 1426, 2141, 2250, 2894
ApeKI	GCWGC	9 cut(s)	970, 1174, 1484, 1537, 1616, 1937, 2192, 2315, 2404
ApoI	RAATTY	4 cut(s)	751, 1221, 1951, 2869
Asp700I	GAANNNNTTC	1 cut(s)	2180
AspLEI	GCGC	2 cut(s)	1179, 2678
AspS9I	GGNCC	6 cut(s)	104, 235, 281, 523, 2371, 2763
AsuHPI	GGTGA	8 cut(s)	686, 1144, 1445, 1843, 1870, 1908, 1956, 1965
AsuII	TTCGAA	1 cut(s)	68
AsuNHI	GCTAGC	1 cut(s)	2564
AvaII	GGWCC	5 cut(s)	235, 281, 523, 2371, 2763
BaeGI	GKGCMC	1 cut(s)	1772
BaeI	ACNNNNGTAYC	6 cut(s)	204, 237, 573, 606, 2246, 2279
BalI	TGGCCA	2 cut(s)	930, 2252
BamHI	GGATCC	1 cut(s)	1315
BanI	GGYRCC	1 cut(s)	1769
BanII	GRGCYC	4 cut(s)	1564, 2238, 2367, 2517
BbrPI	CACGTG	1 cut(s)	1102
BbsI	GAAGAC	2 cut(s)	330, 401
Bbv12I	GWGCWC	4 cut(s)	1527, 2238, 2517, 2626
BbvI	GCAGC	9 cut(s)	982, 1161, 1471, 1549, 1628, 1924, 2204, 2327, 2416
BccI	CCATC	8 cut(s)	340, 830, 1207, 1225, 1356, 1406, 2890, 2904
BceAI	ACGGC	1 cut(s)	1413
BciT130I	CCWGG	6 cut(s)	18, 99, 1072, 1565, 2288, 2369
BciVI	GTATCC	1 cut(s)	2627
BclI	TGATCA	2 cut(s)	622, 2491
BcoDI	GTCTC	7 cut(s)	628, 939, 1382, 1842, 2443, 2580, 2605
BfmI	CTRYAG	3 cut(s)	940, 1818, 2258
BfuAI	ACCTGC	4 cut(s)	1312, 1536, 1644, 1953
BfuI	GTATCC	1 cut(s)	2627
BglI	GCCNNNNNGGC	1 cut(s)	1073
BglII	AGATCT	1 cut(s)	767
Bme1390I	CCNGG	6 cut(s)	18, 99, 1072, 1565, 2288, 2369
Bme18I	GGWCC	5 cut(s)	235, 281, 523, 2371, 2763
BmgT120I	GGNCC	6 cut(s)	104, 235, 281, 523, 2371, 2763
BmiI	GGNNCC	6 cut(s)	22, 1317, 1771, 2364, 2373, 2915
BmrFI	CCNGG	6 cut(s)	18, 99, 1072, 1565, 2288, 2369
BmsI	GCATC	7 cut(s)	210, 360, 1603, 2551, 2680, 2730, 2767
BmtI	GCTAGC	1 cut(s)	2568
BpiI	GAAGAC	2 cut(s)	330, 401
BpmI	CTGGAG	3 cut(s)	45, 81, 447
Bpu10I	CCTNAGC	4 cut(s)	114, 848, 872, 2516
Bpu14I	TTCGAA	1 cut(s)	68
BpuEI	CTTGAG	6 cut(s)	652, 1036, 1266, 1292, 1541, 1808
Bsa29I	ATCGAT	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	1102
BsaBI	GATNNNNATC	1 cut(s)	350
BsaJI	CCNNGG	6 cut(s)	1071, 1429, 1563, 2367, 2375, 2897
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	4 cut(s)	578, 2293, 2582, 2723
Bse1I	ACTGG	5 cut(s)	50, 86, 603, 1134, 1393
Bse3DI	GCAATG	2 cut(s)	625, 1032
Bse8I	GATNNNNATC	1 cut(s)	350
BseAI	TCCGGA	1 cut(s)	491
BseBI	CCWGG	6 cut(s)	18, 99, 1072, 1565, 2288, 2369
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	6 cut(s)	1071, 1429, 1563, 2367, 2375, 2897
BseGI	GGATG	5 cut(s)	1348, 2445, 2716, 2745, 2915
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	4 cut(s)	578, 2293, 2582, 2723
BseMI	GCAATG	2 cut(s)	625, 1032
BseMII	CTCAG	4 cut(s)	146, 922, 2530, 2793
BseNI	ACTGG	5 cut(s)	50, 86, 603, 1134, 1393
BseRI	GAGGAG	5 cut(s)	1757, 2375, 2565, 2696, 2749
BseSI	GKGCMC	1 cut(s)	1772
BseXI	GCAGC	9 cut(s)	982, 1161, 1471, 1549, 1628, 1924, 2204, 2327, 2416
BseYI	CCCAGC	2 cut(s)	25, 2318
BsgI	GTGCAG	1 cut(s)	1829
BshFI	GGCC	8 cut(s)	106, 151, 254, 930, 1428, 2143, 2252, 2896
BshNI	GGYRCC	1 cut(s)	1769
BshVI	ATCGAT	1 cut(s)	204
BsiHKAI	GWGCWC	4 cut(s)	1527, 2238, 2517, 2626
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	2 cut(s)	2095, 2357
BslI	CCNNNNNNNGG	4 cut(s)	578, 2293, 2582, 2723
BsmAI	GTCTC	7 cut(s)	628, 939, 1382, 1842, 2443, 2580, 2605
BsmBI	CGTCTC	1 cut(s)	2580
BsmFI	GGGAC	2 cut(s)	2095, 2357
BsmI	GAATGC	4 cut(s)	203, 973, 994, 1874
BsnI	GGCC	8 cut(s)	106, 151, 254, 930, 1428, 2143, 2252, 2896
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	7 cut(s)	1527, 1564, 1772, 2238, 2367, 2517, 2626
Bsp13I	TCCGGA	1 cut(s)	491
Bsp1407I	TGTACA	1 cut(s)	2697
Bsp19I	CCATGG	2 cut(s)	2375, 2897
BspACI	CCGC	5 cut(s)	238, 1319, 1513, 2245, 2838
BspANI	GGCC	8 cut(s)	106, 151, 254, 930, 1428, 2143, 2252, 2896
BspCNI	CTCAG	4 cut(s)	147, 921, 2529, 2794
BspDI	ATCGAT	1 cut(s)	204
BspEI	TCCGGA	1 cut(s)	491
BspHI	TCATGA	1 cut(s)	2773
BspLI	GGNNCC	6 cut(s)	22, 1317, 1771, 2364, 2373, 2915
BspMAI	CTGCAG	1 cut(s)	2262
BspMI	ACCTGC	4 cut(s)	1312, 1536, 1644, 1953
BspOI	GCTAGC	1 cut(s)	2568
BspPI	GGATC	6 cut(s)	563, 1190, 1310, 1323, 2403, 2477
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	1769
BsrBI	CCGCTC	2 cut(s)	240, 2245
BsrDI	GCAATG	2 cut(s)	625, 1032
BsrGI	TGTACA	1 cut(s)	2697
BsrI	ACTGG	5 cut(s)	50, 86, 603, 1134, 1393
BssECI	CCNNGG	6 cut(s)	1071, 1429, 1563, 2367, 2375, 2897
BssT1I	CCWWGG	2 cut(s)	2375, 2897
Bst2UI	CCWGG	6 cut(s)	18, 99, 1072, 1565, 2288, 2369
Bst4CI	ACNGT	8 cut(s)	7, 139, 304, 586, 705, 895, 1702, 2460
Bst6I	CTCTTC	3 cut(s)	114, 1845, 2193
BstAPI	GCANNNNNTGC	2 cut(s)	839, 998
BstAUI	TGTACA	1 cut(s)	2697
BstBAI	YACGTR	1 cut(s)	1102
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	7 cut(s)	616, 781, 994, 1641, 2354, 2566, 2595
BstDEI	CTNAG	9 cut(s)	114, 155, 848, 872, 908, 1887, 2516, 2627, 2802
BstDSI	CCRYGG	3 cut(s)	1429, 2375, 2897
BstEII	GGTNACC	1 cut(s)	2659
BstF5I	GGATG	5 cut(s)	1348, 2445, 2716, 2745, 2915
BstHHI	GCGC	2 cut(s)	1179, 2678
BstMAI	GTCTC	7 cut(s)	628, 939, 1382, 1842, 2443, 2580, 2605
BstNI	CCWGG	6 cut(s)	18, 99, 1072, 1565, 2288, 2369
BstNSI	RCATGY	4 cut(s)	833, 2352, 2848, 2941
BstPI	GGTNACC	1 cut(s)	2659
BstSCI	CCNGG	6 cut(s)	16, 97, 1070, 1563, 2286, 2367
BstSFI	CTRYAG	3 cut(s)	940, 1818, 2258
BstSLI	GKGCMC	1 cut(s)	1772
BstV1I	GCAGC	9 cut(s)	982, 1161, 1471, 1549, 1628, 1924, 2204, 2327, 2416
BstV2I	GAAGAC	2 cut(s)	330, 401
BstX2I	RGATCY	4 cut(s)	767, 1195, 1315, 2482
BstYI	RGATCY	4 cut(s)	767, 1195, 1315, 2482
Bsu15I	ATCGAT	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	2627
BsuRI	GGCC	8 cut(s)	106, 151, 254, 930, 1428, 2143, 2252, 2896
BsuTUI	ATCGAT	1 cut(s)	204
BtgI	CCRYGG	3 cut(s)	1429, 2375, 2897
BtsCI	GGATG	5 cut(s)	1348, 2445, 2716, 2745, 2915
BtsI	GCAGTG	2 cut(s)	394, 996
BveI	ACCTGC	4 cut(s)	1312, 1536, 1644, 1953
Cac8I	GCNNGC	7 cut(s)	616, 781, 994, 1641, 2354, 2566, 2595
CaiI	CAGNNNCTG	1 cut(s)	2072
CciI	TCATGA	1 cut(s)	2773
CfoI	GCGC	2 cut(s)	1179, 2678
Cfr13I	GGNCC	6 cut(s)	104, 235, 281, 523, 2371, 2763
ClaI	ATCGAT	1 cut(s)	204
Csp6I	GTAC	6 cut(s)	400, 582, 738, 1011, 2263, 2698
CviQI	GTAC	6 cut(s)	400, 582, 738, 1011, 2263, 2698
DdeI	CTNAG	9 cut(s)	114, 155, 848, 872, 908, 1887, 2516, 2627, 2802
DraI	TTTAAA	1 cut(s)	687
DraIII	CACNNNGTG	1 cut(s)	746
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
EaeI	YGGCCR	2 cut(s)	928, 2250
Eam1104I	CTCTTC	3 cut(s)	114, 1845, 2193
EarI	CTCTTC	3 cut(s)	114, 1845, 2193
Ecl136II	GAGCTC	2 cut(s)	2236, 2515
Eco130I	CCWWGG	2 cut(s)	2375, 2897
Eco147I	AGGCCT	3 cut(s)	151, 254, 2143
Eco24I	GRGCYC	4 cut(s)	1564, 2238, 2367, 2517
Eco32I	GATATC	1 cut(s)	439
Eco47I	GGWCC	5 cut(s)	235, 281, 523, 2371, 2763
Eco53kI	GAGCTC	2 cut(s)	2236, 2515
Eco57I	CTGAAG	2 cut(s)	1338, 1347
Eco72I	CACGTG	1 cut(s)	1102
Eco91I	GGTNACC	1 cut(s)	2659
EcoICRI	GAGCTC	2 cut(s)	2236, 2515
EcoO109I	RGGNCCY	2 cut(s)	523, 2371
EcoO65I	GGTNACC	1 cut(s)	2659
EcoRII	CCWGG	6 cut(s)	16, 97, 1070, 1563, 2286, 2367
EcoRV	GATATC	1 cut(s)	439
EcoT14I	CCWWGG	2 cut(s)	2375, 2897
EcoT22I	ATGCAT	2 cut(s)	203, 2695
EcoT38I	GRGCYC	4 cut(s)	1564, 2238, 2367, 2517
ErhI	CCWWGG	2 cut(s)	2375, 2897
Esp3I	CGTCTC	1 cut(s)	2580
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	2 cut(s)	2095, 2357
FauI	CCCGC	1 cut(s)	2238
FauNDI	CATATG	2 cut(s)	1007, 2224
FbaI	TGATCA	2 cut(s)	622, 2491
FokI	GGATG	5 cut(s)	1335, 2432, 2723, 2752, 2922
FriOI	GRGCYC	4 cut(s)	1564, 2238, 2367, 2517
FspI	TGCGCA	1 cut(s)	1178
GlaI	GCGC	2 cut(s)	1178, 2677
GsaI	CCCAGC	2 cut(s)	29, 2322
GsuI	CTGGAG	3 cut(s)	45, 81, 447
HaeIII	GGCC	8 cut(s)	106, 151, 254, 930, 1428, 2143, 2252, 2896
HapII	CCGG	1 cut(s)	492
HhaI	GCGC	2 cut(s)	1179, 2678
Hin6I	GCGC	2 cut(s)	1177, 2676
HinP1I	GCGC	2 cut(s)	1177, 2676
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HindIII	AAGCTT	2 cut(s)	557, 2816
HinfI	GANTC	8 cut(s)	539, 947, 1018, 1030, 1895, 2003, 2069, 2083
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	8 cut(s)	686, 1144, 1445, 1843, 1870, 1908, 1956, 1965
Hpy166II	GTNNAC	7 cut(s)	93, 235, 402, 740, 812, 1105, 2158
Hpy8I	GTNNAC	7 cut(s)	93, 235, 402, 740, 812, 1105, 2158
HpyAV	CCTTC	9 cut(s)	308, 848, 1141, 1362, 1885, 2154, 2717, 2845, 2939
HpyCH4III	ACNGT	8 cut(s)	7, 139, 304, 586, 705, 895, 1702, 2460
HpyCH4IV	ACGT	3 cut(s)	398, 1101, 2668
HpyF3I	CTNAG	9 cut(s)	114, 155, 848, 872, 908, 1887, 2516, 2627, 2802
HpySE526I	ACGT	3 cut(s)	398, 1101, 2668
HspAI	GCGC	2 cut(s)	1177, 2676
Kpn2I	TCCGGA	1 cut(s)	491
Ksp22I	TGATCA	2 cut(s)	622, 2491
LmnI	GCTCC	7 cut(s)	166, 1420, 1492, 2296, 2362, 2512, 2578
Lsp1109I	GCAGC	9 cut(s)	982, 1161, 1471, 1549, 1628, 1924, 2204, 2327, 2416
LweI	GCATC	7 cut(s)	210, 360, 1603, 2551, 2680, 2730, 2767
MaeII	ACGT	3 cut(s)	398, 1101, 2668
MaeIII	GTNAC	6 cut(s)	133, 705, 1084, 1357, 2227, 2659
MbiI	CCGCTC	2 cut(s)	240, 2245
MfeI	CAATTG	3 cut(s)	170, 729, 1626
MflI	RGATCY	4 cut(s)	767, 1195, 1315, 2482
MhlI	GDGCHC	7 cut(s)	1527, 1564, 1772, 2238, 2367, 2517, 2626
MlsI	TGGCCA	2 cut(s)	930, 2252
MluNI	TGGCCA	2 cut(s)	930, 2252
MlyI	GAGTC	7 cut(s)	941, 1027, 1039, 1904, 2012, 2077, 2078
MmeI	TCCRAC	2 cut(s)	895, 1675
Mox20I	TGGCCA	2 cut(s)	930, 2252
Mph1103I	ATGCAT	2 cut(s)	203, 2695
MroI	TCCGGA	1 cut(s)	491
MroXI	GAANNNNTTC	1 cut(s)	2180
MscI	TGGCCA	2 cut(s)	930, 2252
MseI	TTAA	4 cut(s)	530, 641, 686, 2934
MslI	CAYNNNNRTG	2 cut(s)	196, 834
Msp20I	TGGCCA	2 cut(s)	930, 2252
MspA1I	CMGCKG	4 cut(s)	1484, 1619, 2318, 2489
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	6 cut(s)	18, 99, 1072, 1565, 2288, 2369
MunI	CAATTG	3 cut(s)	170, 729, 1626
Mva1269I	GAATGC	4 cut(s)	203, 973, 994, 1874
MvaI	CCWGG	6 cut(s)	18, 99, 1072, 1565, 2288, 2369
NcoI	CCATGG	2 cut(s)	2375, 2897
NdeI	CATATG	2 cut(s)	1007, 2224
NheI	GCTAGC	1 cut(s)	2564
NlaIV	GGNNCC	6 cut(s)	22, 1317, 1771, 2364, 2373, 2915
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	3 cut(s)	705, 1084, 1357
NsbI	TGCGCA	1 cut(s)	1178
NsiI	ATGCAT	2 cut(s)	203, 2695
NspI	RCATGY	4 cut(s)	833, 2352, 2848, 2941
NspV	TTCGAA	1 cut(s)	68
PagI	TCATGA	1 cut(s)	2773
PaqCI	CACCTGC	1 cut(s)	1536
PceI	AGGCCT	3 cut(s)	151, 254, 2143
PciI	ACATGT	1 cut(s)	2937
PctI	GAATGC	4 cut(s)	203, 973, 994, 1874
PdmI	GAANNNNTTC	1 cut(s)	2180
PfeI	GAWTC	1 cut(s)	539
PflMI	CCANNNNNTGG	1 cut(s)	2293
PfoI	TCCNGGA	2 cut(s)	16, 97
PleI	GAGTC	7 cut(s)	941, 1026, 1038, 1903, 2011, 2077, 2077
PmaCI	CACGTG	1 cut(s)	1102
PmlI	CACGTG	1 cut(s)	1102
PpsI	GAGTC	7 cut(s)	941, 1026, 1038, 1903, 2011, 2077, 2077
Ppu21I	YACGTR	1 cut(s)	1102
PpuMI	RGGWCCY	2 cut(s)	523, 2371
PscI	ACATGT	1 cut(s)	2937
Psp124BI	GAGCTC	2 cut(s)	2238, 2517
Psp5II	RGGWCCY	2 cut(s)	523, 2371
Psp6I	CCWGG	6 cut(s)	16, 97, 1070, 1563, 2286, 2367
PspCI	CACGTG	1 cut(s)	1102
PspEI	GGTNACC	1 cut(s)	2659
PspFI	CCCAGC	2 cut(s)	25, 2318
PspGI	CCWGG	6 cut(s)	16, 97, 1070, 1563, 2286, 2367
PspN4I	GGNNCC	6 cut(s)	22, 1317, 1771, 2364, 2373, 2915
PspPI	GGNCC	6 cut(s)	104, 235, 281, 523, 2371, 2763
PspPPI	RGGWCCY	2 cut(s)	523, 2371
PstI	CTGCAG	1 cut(s)	2262
PstNI	CAGNNNCTG	1 cut(s)	2072
PsuI	RGATCY	4 cut(s)	767, 1195, 1315, 2482
PvuII	CAGCTG	4 cut(s)	1484, 1619, 2318, 2489
RsaI	GTAC	6 cut(s)	401, 583, 739, 1012, 2264, 2699
RsaNI	GTAC	6 cut(s)	400, 582, 738, 1011, 2263, 2698
RseI	CAYNNNNRTG	2 cut(s)	196, 834
SacI	GAGCTC	2 cut(s)	2238, 2517
SaqAI	TTAA	4 cut(s)	530, 641, 686, 2934
Sau96I	GGNCC	6 cut(s)	104, 235, 281, 523, 2371, 2763
SchI	GAGTC	7 cut(s)	941, 1027, 1039, 1904, 2012, 2077, 2078
ScrFI	CCNGG	6 cut(s)	18, 99, 1072, 1565, 2288, 2369
SduI	GDGCHC	7 cut(s)	1527, 1564, 1772, 2238, 2367, 2517, 2626
SfaNI	GCATC	7 cut(s)	210, 360, 1603, 2551, 2680, 2730, 2767
SfcI	CTRYAG	3 cut(s)	940, 1818, 2258
SfuI	TTCGAA	1 cut(s)	68
SinI	GGWCC	5 cut(s)	235, 281, 523, 2371, 2763
SmiMI	CAYNNNNRTG	2 cut(s)	196, 834
SmlI	CTYRAG	6 cut(s)	631, 1015, 1281, 1307, 1520, 1787
SmoI	CTYRAG	6 cut(s)	631, 1015, 1281, 1307, 1520, 1787
SseBI	AGGCCT	3 cut(s)	151, 254, 2143
SsiI	CCGC	5 cut(s)	238, 1319, 1513, 2245, 2838
SstI	GAGCTC	2 cut(s)	2238, 2517
StuI	AGGCCT	3 cut(s)	151, 254, 2143
StyD4I	CCNGG	6 cut(s)	16, 97, 1070, 1563, 2286, 2367
StyI	CCWWGG	2 cut(s)	2375, 2897
TaaI	ACNGT	8 cut(s)	7, 139, 304, 586, 705, 895, 1702, 2460
TaiI	ACGT	3 cut(s)	401, 1104, 2671
TaqI	TCGA	7 cut(s)	68, 75, 204, 224, 1202, 1558, 2721
TaqII	GACCGA	2 cut(s)	269, 2780
TatI	WGTACW	2 cut(s)	737, 2697
TauI	GCSGC	1 cut(s)	2841
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	4 cut(s)	530, 641, 686, 2934
Tru9I	TTAA	4 cut(s)	530, 641, 686, 2934
TseFI	GTSAC	3 cut(s)	705, 1084, 1357
TseI	GCWGC	9 cut(s)	970, 1174, 1484, 1537, 1616, 1937, 2192, 2315, 2404
Tsp45I	GTSAC	3 cut(s)	705, 1084, 1357
TspDTI	ATGAA	7 cut(s)	470, 1563, 1748, 1884, 2025, 2177, 2355
TspGWI	ACGGA	1 cut(s)	734
Van91I	CCANNNNNTGG	1 cut(s)	2293
VpaK11BI	GGWCC	5 cut(s)	235, 281, 523, 2371, 2763
XapI	RAATTY	4 cut(s)	751, 1221, 1951, 2869
XbaI	TCTAGA	1 cut(s)	562
XceI	RCATGY	4 cut(s)	833, 2352, 2848, 2941
XmnI	GAANNNNTTC	1 cut(s)	2180
Zsp2I	ATGCAT	2 cut(s)	203, 2695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.