Rroxscaffold_4G00278550

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
1493077 .. 1494000
924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278550.1

Sequence Viewer

Length: 264 bp
ATGGCTCAGCTTAGAATCACCTTCTTCATTCTTCGAGTACTCCTCTCAGTCCTTCTCATTTCCTTATCTTCAGGTAACAACATTGTTGAAGGCTTCAAGGATGGCAATGATCACCACATTGATCATTTACTTCACAAGGGCATCAAAGTGAATTCAAGGAAGCTGGTTATGATGCTAGATGCAACAATGCATGACTATGATGATGCAGGAGCGAACCCCAAACACGATCCTCGAAGGAAACCAGGCAATGGGAGAAACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.78

Weight (kDa)

9.6

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 248
AclWI GGATC 1 cut(s) 221
AcsI RAATTY 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 3 cut(s) 89, 97, 156
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 2 cut(s) 10, 163
AluI AGCT 2 cut(s) 10, 163
AlwI GGATC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 151
AsuHPI GGTGA 2 cut(s) 10, 104
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 2 cut(s) 109, 121
BfaI CTAG 1 cut(s) 176
BlpI GCTNAGC 1 cut(s) 6
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 243
BmsI GCATC 4 cut(s) 150, 162, 169, 193
BplI GAGNNNNNCTC 2 cut(s) 27, 59
Bpu1102I GCTNAGC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse3DI GCAATG 2 cut(s) 112, 253
BseBI CCWGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMI GCAATG 2 cut(s) 112, 253
BseMII CTCAG 2 cut(s) 20, 60
BseRI GAGGAG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 248
Bsp143I GATC 3 cut(s) 109, 121, 226
Bsp1720I GCTNAGC 1 cut(s) 6
BspCNI CTCAG 2 cut(s) 19, 59
BspPI GGATC 1 cut(s) 221
BsrDI GCAATG 2 cut(s) 112, 253
BssMI GATC 3 cut(s) 109, 121, 226
Bst2UI CCWGG 1 cut(s) 243
BstDEI CTNAG 3 cut(s) 6, 11, 46
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 3 cut(s) 112, 124, 229
BstMBI GATC 3 cut(s) 109, 121, 226
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BtsCI GGATG 1 cut(s) 106
Csp6I GTAC 1 cut(s) 38
CviAII CATG 2 cut(s) 191, 261
CviJI RGCY 4 cut(s) 5, 10, 93, 163
CviKI_1 RGCY 4 cut(s) 5, 10, 93, 163
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 3 cut(s) 6, 11, 46
DpnI GATC 3 cut(s) 111, 123, 228
DpnII GATC 3 cut(s) 109, 121, 226
Eco57I CTGAAG 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 241
EcoT22I ATGCAT 1 cut(s) 192
FaeI CATG 2 cut(s) 194, 264
FaiI YATR 4 cut(s) 170, 192, 198, 262
FatI CATG 2 cut(s) 190, 260
FbaI TGATCA 2 cut(s) 109, 121
FokI GGATG 1 cut(s) 113
FspBI CTAG 1 cut(s) 176
Hin1II CATG 2 cut(s) 194, 264
HinfI GANTC 1 cut(s) 15
HphI GGTGA 2 cut(s) 10, 104
HpyAV CCTTC 4 cut(s) 31, 62, 83, 228
HpyCH4V TGCA 3 cut(s) 182, 190, 206
HpyF3I CTNAG 3 cut(s) 6, 11, 46
Hsp92II CATG 2 cut(s) 194, 264
Ksp22I TGATCA 2 cut(s) 109, 121
Kzo9I GATC 3 cut(s) 109, 121, 226
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 5 cut(s) 57, 149, 192, 228, 255
LweI GCATC 4 cut(s) 150, 162, 169, 193
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 74
MalI GATC 3 cut(s) 111, 123, 228
MboI GATC 3 cut(s) 109, 121, 226
MboII GAAGA 3 cut(s) 16, 23, 60
MluCI AATT 1 cut(s) 151
MnlI CCTC 2 cut(s) 53, 240
Mph1103I ATGCAT 1 cut(s) 192
MslI CAYNNNNRTG 2 cut(s) 146, 195
MspR9I CCNGG 1 cut(s) 243
MvaI CCWGG 1 cut(s) 243
NdeII GATC 3 cut(s) 109, 121, 226
NlaIII CATG 2 cut(s) 194, 264
NsiI ATGCAT 1 cut(s) 192
PfeI GAWTC 1 cut(s) 15
PflMI CCANNNNNTGG 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 2 cut(s) 146, 195
Sau3AI GATC 3 cut(s) 109, 121, 226
ScaI AGTACT 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 243
SetI ASST 4 cut(s) 12, 23, 76, 165
SfaNI GCATC 4 cut(s) 150, 162, 169, 193
SmiMI CAYNNNNRTG 2 cut(s) 146, 195
Sse9I AATT 1 cut(s) 151
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 241
TaqI TCGA 2 cut(s) 34, 232
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 37
TfiI GAWTC 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 248
XapI RAATTY 1 cut(s) 151
XspI CTAG 1 cut(s) 176
ZrmI AGTACT 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.