Rh1DG442200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
65175944 .. 65176386
443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG442200.1

Sequence Viewer

Length: 270 bp
ATGGCTCAGCTTAGAATCACCTTCTTCATTCTTCGAGTACTTCTCCTCTCAGTCCTTCTCATTTCCTTATCTTCAGGTAACAACATTGTTGAAGGCTTCAAGGATGGCAATATTGATCACCACATTGATCATTTACTTCACAAGGGCATCAAAGTGAATTCAAGGAAGCTGGTTATGATGCTAGATGCAACAATGCATGACTATGATGATGCAGGAGCGAACCCCAAACACGATCCTCGAAGGAAACCAGGCAATGGGAGAAACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.01

Weight (kDa)

9.6

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 254
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 3 cut(s) 92, 100, 162
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 10, 169
AluI AGCT 2 cut(s) 10, 169
AlwI GGATC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 10, 110
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 249
BclI TGATCA 2 cut(s) 115, 127
BfaI CTAG 1 cut(s) 182
BlpI GCTNAGC 1 cut(s) 6
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 4 cut(s) 156, 168, 175, 199
BplI GAGNNNNNCTC 2 cut(s) 27, 59
Bpu1102I GCTNAGC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 20, 63
BseRI GAGGAG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 254
Bsp143I GATC 3 cut(s) 115, 127, 232
Bsp1720I GCTNAGC 1 cut(s) 6
BspCNI CTCAG 2 cut(s) 19, 62
BspPI GGATC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 259
BssMI GATC 3 cut(s) 115, 127, 232
Bst2UI CCWGG 1 cut(s) 249
BstDEI CTNAG 3 cut(s) 6, 11, 49
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 3 cut(s) 118, 130, 235
BstMBI GATC 3 cut(s) 115, 127, 232
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 109
Csp6I GTAC 1 cut(s) 38
CviAII CATG 2 cut(s) 197, 267
CviJI RGCY 4 cut(s) 5, 10, 96, 169
CviKI_1 RGCY 4 cut(s) 5, 10, 96, 169
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 3 cut(s) 6, 11, 49
DpnI GATC 3 cut(s) 117, 129, 234
DpnII GATC 3 cut(s) 115, 127, 232
Eco57I CTGAAG 1 cut(s) 57
EcoRI GAATTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 247
EcoT22I ATGCAT 1 cut(s) 198
FaeI CATG 2 cut(s) 200, 270
FaiI YATR 4 cut(s) 176, 198, 204, 268
FatI CATG 2 cut(s) 196, 266
FbaI TGATCA 2 cut(s) 115, 127
FokI GGATG 1 cut(s) 116
FspBI CTAG 1 cut(s) 182
Hin1II CATG 2 cut(s) 200, 270
HinfI GANTC 1 cut(s) 15
HphI GGTGA 2 cut(s) 10, 110
HpyAV CCTTC 4 cut(s) 31, 65, 86, 234
HpyCH4V TGCA 3 cut(s) 188, 196, 212
HpyF3I CTNAG 3 cut(s) 6, 11, 49
Hsp92II CATG 2 cut(s) 200, 270
Ksp22I TGATCA 2 cut(s) 115, 127
Kzo9I GATC 3 cut(s) 115, 127, 232
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 5 cut(s) 60, 155, 198, 234, 261
LweI GCATC 4 cut(s) 156, 168, 175, 199
MaeI CTAG 1 cut(s) 182
MaeIII GTNAC 1 cut(s) 77
MalI GATC 3 cut(s) 117, 129, 234
MboI GATC 3 cut(s) 115, 127, 232
MboII GAAGA 3 cut(s) 16, 23, 63
MluCI AATT 1 cut(s) 157
MnlI CCTC 2 cut(s) 56, 246
Mph1103I ATGCAT 1 cut(s) 198
MslI CAYNNNNRTG 2 cut(s) 152, 201
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
NdeII GATC 3 cut(s) 115, 127, 232
NlaIII CATG 2 cut(s) 200, 270
NsiI ATGCAT 1 cut(s) 198
PfeI GAWTC 1 cut(s) 15
PflMI CCANNNNNTGG 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 2 cut(s) 152, 201
Sau3AI GATC 3 cut(s) 115, 127, 232
ScaI AGTACT 1 cut(s) 39
ScrFI CCNGG 1 cut(s) 249
SetI ASST 4 cut(s) 12, 23, 79, 171
SfaNI GCATC 4 cut(s) 156, 168, 175, 199
SmiMI CAYNNNNRTG 2 cut(s) 152, 201
Sse9I AATT 1 cut(s) 157
SspI AATATT 1 cut(s) 112
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 247
TaqI TCGA 2 cut(s) 34, 238
TasI AATT 1 cut(s) 157
TatI WGTACW 1 cut(s) 37
TfiI GAWTC 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 16
Van91I CCANNNNNTGG 1 cut(s) 254
XapI RAATTY 1 cut(s) 157
XspI CTAG 1 cut(s) 182
ZrmI AGTACT 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.