Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Forward (+)

52874414 .. 52878353

Gene Structure 3940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0430200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGACGACGAAGAAATGGTGGAGTTTGTTAAGGAGGCTTTCGAGGGTGAAGAAATTGACATGGATTATGAGTTCGACGCGCCTAGGTTCTATGATTTTACAACGCTTGAAACCGATTGGGAGGCTGAAGTGGCTGAAGATTGGTTCAGATACGCCGGAAGTTATCCTTCGTCTCCTTTTATAGTGAGATTGTTGAATTGGCACAAGGGCAATTCTCTTGAGGAAACAGCAAACACCTCTGTGGAATTCAAAGATGTCGAATGCATTAAATGTGCTAGCATCGAGTCGAAGAATAACATGGAAGCTGAGGGTTCTTCAATAGAAGATGATAGTAACAGAGGAGTAAAATGCGTAAATAAAATGGATCCAGATACTCCAAAAGCTAAAACCAAGTCCTCGGTCAAGTCACCATCCATATCAAGGAGTTCAACTTTGATGAAACCCACAGCGAGTCAATTAGCCAAGCAAAAACAGCGTCGTCATGAAGTTCGACAATCTCACTCCAATCGATTATCGAGGAGGCTTGAGAAGAAGCTAGGGAAAGTCGCGGAGAATTCACCGAGTTCTCCATTATTCGTTAGTGTAGCAACTAAAAGACAGAAGTTGGAGGCTGGCTATGTGCGGAAGGTTTCTCAACTTAAGCATCAACCTCTTTGGTTACACAAGTCGCCAAAAAAGGTTGGAACTGCTGTAACGTCACCAAATGGTAGACCTAAAGTCACCATTCCTAGAGAACCAAACTTGGAAACAGCACAAAGGGCACAAAGACGTAGGTATAAGACTATTGCGAAAGATGGAGAACAAGCAAAAATTATCAAGGAGCCTCCATGGACCCTGCCTAAGAAGAGCACACCACAAGCAAAAGAATTTCAAGTGTTCTATTTCAGGACATCACAAAGAGCTAAGCAAAGCACAGTTGATAATGTGACAAACACACCGATTTCTAGTTGTTTATCACCAACTGAAGCCACAGAGATTAAAGGACCAAACTCTGTCTCTGCCAAAAGTGATAAATGCAAAGTACTCTCTCTTAAAAATAAGACATTGTCAAGTAAGGAAGGAACTGGTGCTATCCCAAATATCAAACAGGAAAGCAGACTACCAAGTCCAAGGGAATTAAAGTTTGACAAGAGGTTTATGAAGGAGCCACCAACAGATTTATTCAGCAAGCTCTCACTTGCACCTGAAGCCCATCATAATGCAAATCCTGAGCTTAAAACTGCCTATGCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

411

Amino Acids

46.42

Weight (kDa)

9.35

Isoelectric Point (pI)

58.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2_importin	PF12214	239 - 368	1.6e-10	Cell cycle regulated microtubule associated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1104
AccI	GTMKAC	1 cut(s)	709
AccII	CGCG	2 cut(s)	80, 548
AciI	CCGC	2 cut(s)	548, 622
AclWI	GGATC	2 cut(s)	359, 372
AcsI	RAATTY	3 cut(s)	245, 553, 866
AcuI	CTGAAG	4 cut(s)	147, 156, 984, 1206
AfaI	GTAC	1 cut(s)	1023
AfiI	CCNNNNNNNGG	1 cut(s)	420
AflII	CTTAAG	1 cut(s)	638
AgsI	TTSAA	6 cut(s)	110, 196, 250, 318, 429, 872
AhdI	GACNNNNNGTC	1 cut(s)	716
AleI	CACNNNNGTG	1 cut(s)	239
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
AluBI	AGCT	6 cut(s)	305, 383, 535, 902, 1171, 1213
AluI	AGCT	6 cut(s)	305, 383, 535, 902, 1171, 1213
Alw21I	GWGCWC	1 cut(s)	851
Alw26I	GTCTC	2 cut(s)	177, 1000
AlwI	GGATC	2 cut(s)	359, 372
ApoI	RAATTY	3 cut(s)	245, 553, 866
ArsI	GACNNNNNNTTYG	2 cut(s)	460, 492
AspA2I	CCTAGG	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	2 cut(s)	831, 983
AsuHPI	GGTGA	6 cut(s)	59, 399, 549, 690, 712, 948
AsuNHI	GCTAGC	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	831, 983
AvrII	CCTAGG	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	763
BamHI	GGATCC	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	851
BbvCI	CCTCAGC	1 cut(s)	306
BccI	CCATC	3 cut(s)	418, 788, 1200
BcoDI	GTCTC	2 cut(s)	177, 1000
BfaI	CTAG	5 cut(s)	84, 276, 536, 729, 945
BfrI	CTTAAG	1 cut(s)	638
BlnI	CCTAGG	1 cut(s)	83
BlpI	GCTNAGC	1 cut(s)	903
BmcAI	AGTACT	1 cut(s)	1023
Bme18I	GGWCC	2 cut(s)	831, 983
BmeRI	GACNNNNNGTC	1 cut(s)	716
BmgT120I	GGNCC	2 cut(s)	831, 983
BmiI	GGNNCC	4 cut(s)	366, 822, 833, 1146
BmsI	GCATC	2 cut(s)	288, 652
BmtI	GCTAGC	1 cut(s)	279
Bpu10I	CCTNAGC	2 cut(s)	306, 1209
Bpu1102I	GCTNAGC	1 cut(s)	903
BpuEI	CTTGAG	2 cut(s)	239, 545
Bsa29I	ATCGAT	1 cut(s)	508
BsaJI	CCNNGG	4 cut(s)	83, 396, 827, 1109
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	1069
BseCI	ATCGAT	1 cut(s)	508
BseDI	CCNNGG	4 cut(s)	83, 396, 827, 1109
BseGI	GGATG	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	297, 1200
BseNI	ACTGG	1 cut(s)	1069
BseRI	GAGGAG	2 cut(s)	354, 532
BseSI	GKGCMC	1 cut(s)	763
Bsh1236I	CGCG	2 cut(s)	80, 548
BshVI	ATCGAT	1 cut(s)	508
BsiHKAI	GWGCWC	1 cut(s)	851
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmAI	GTCTC	2 cut(s)	177, 1000
BsmBI	CGTCTC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	266
Bsp1286I	GDGCHC	2 cut(s)	763, 851
Bsp143I	GATC	1 cut(s)	364
Bsp1720I	GCTNAGC	1 cut(s)	903
Bsp19I	CCATGG	1 cut(s)	827
BspACI	CCGC	2 cut(s)	548, 622
BspCNI	CTCAG	2 cut(s)	298, 1201
BspDI	ATCGAT	1 cut(s)	508
BspFNI	CGCG	2 cut(s)	80, 548
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	4 cut(s)	366, 822, 833, 1146
BspOI	GCTAGC	1 cut(s)	279
BspPI	GGATC	2 cut(s)	359, 372
BspQI	GCTCTTC	1 cut(s)	839
BspTI	CTTAAG	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	1069
BssECI	CCNNGG	4 cut(s)	83, 396, 827, 1109
BssMI	GATC	1 cut(s)	364
BssT1I	CCWWGG	3 cut(s)	83, 827, 1109
Bst4CI	ACNGT	1 cut(s)	916
Bst6I	CTCTTC	1 cut(s)	839
BstAFI	CTTAAG	1 cut(s)	638
BstC8I	GCNNGC	4 cut(s)	277, 613, 1169, 1231
BstDEI	CTNAG	4 cut(s)	306, 840, 903, 1209
BstDSI	CCRYGG	1 cut(s)	827
BstF5I	GGATG	1 cut(s)	410
BstFNI	CGCG	2 cut(s)	80, 548
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	2 cut(s)	177, 1000
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 472, 758, 1187
BstSLI	GKGCMC	1 cut(s)	763
BstUI	CGCG	2 cut(s)	80, 548
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	508
BsuTUI	ATCGAT	1 cut(s)	508
BtgI	CCRYGG	1 cut(s)	827
BtsCI	GGATG	1 cut(s)	410
Cac8I	GCNNGC	4 cut(s)	277, 613, 1169, 1231
CciI	TCATGA	1 cut(s)	481
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	831, 983
ClaI	ATCGAT	1 cut(s)	508
CseI	GACGC	2 cut(s)	86, 464
Csp6I	GTAC	1 cut(s)	1022
CviAII	CATG	4 cut(s)	61, 298, 482, 828
CviQI	GTAC	1 cut(s)	1022
DdeI	CTNAG	4 cut(s)	306, 840, 903, 1209
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
DrdI	GACNNNNNNGTC	1 cut(s)	1104
DriI	GACNNNNNGTC	1 cut(s)	716
DseDI	GACNNNNNNGTC	1 cut(s)	1104
Eam1104I	CTCTTC	1 cut(s)	839
Eam1105I	GACNNNNNGTC	1 cut(s)	716
EarI	CTCTTC	1 cut(s)	839
Eco130I	CCWWGG	3 cut(s)	83, 827, 1109
Eco47I	GGWCC	2 cut(s)	831, 983
Eco57I	CTGAAG	4 cut(s)	147, 156, 984, 1206
EcoRI	GAATTC	2 cut(s)	245, 553
EcoT14I	CCWWGG	3 cut(s)	83, 827, 1109
EcoT22I	ATGCAT	1 cut(s)	266
ErhI	CCWWGG	3 cut(s)	83, 827, 1109
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	4 cut(s)	64, 301, 485, 831
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FatI	CATG	4 cut(s)	60, 297, 481, 827
FblI	GTMKAC	1 cut(s)	709
FokI	GGATG	1 cut(s)	397
FspBI	CTAG	5 cut(s)	84, 276, 536, 729, 945
GlaI	GCGC	1 cut(s)	81
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	2 cut(s)	86, 464
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	4 cut(s)	64, 301, 485, 831
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	2 cut(s)	284, 451
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	6 cut(s)	59, 399, 549, 690, 712, 948
Hpy166II	GTNNAC	1 cut(s)	710
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	5 cut(s)	218, 368, 482, 886, 1208
Hpy8I	GTNNAC	1 cut(s)	710
Hpy99I	CGWCG	3 cut(s)	11, 80, 480
HpyAV	CCTTC	4 cut(s)	177, 619, 1052, 1135
HpyCH4III	ACNGT	1 cut(s)	916
HpyCH4IV	ACGT	2 cut(s)	695, 769
HpyCH4V	TGCA	4 cut(s)	264, 1017, 1181, 1202
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 472, 758, 1187
HpyF3I	CTNAG	4 cut(s)	306, 840, 903, 1209
HpySE526I	ACGT	2 cut(s)	695, 769
Hsp92II	CATG	4 cut(s)	64, 301, 485, 831
HspAI	GCGC	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	364
LguI	GCTCTTC	1 cut(s)	839
LmnI	GCTCC	2 cut(s)	820, 1144
LpnPI	CCDG	9 cut(s)	169, 381, 597, 848, 871, 1050, 1073, 1197, 1221
LweI	GCATC	2 cut(s)	288, 652
MaeI	CTAG	5 cut(s)	84, 276, 536, 729, 945
MaeII	ACGT	2 cut(s)	695, 769
MaeIII	GTNAC	7 cut(s)	332, 405, 657, 691, 696, 718, 925
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	8 cut(s)	23, 62, 149, 301, 306, 335, 541, 856
MflI	RGATCY	1 cut(s)	364
MhlI	GDGCHC	2 cut(s)	763, 851
MluCI	AATT	9 cut(s)	54, 196, 211, 245, 455, 553, 810, 866, 1115
MlyI	GAGTC	2 cut(s)	293, 460
MmeI	TCCRAC	2 cut(s)	585, 661
Mph1103I	ATGCAT	1 cut(s)	266
MseI	TTAA	7 cut(s)	30, 267, 639, 978, 1032, 1118, 1215
MslI	CAYNNNNRTG	2 cut(s)	239, 1197
MspCI	CTTAAG	1 cut(s)	638
MspI	CCGG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	266
MvnI	CGCG	2 cut(s)	80, 548
MwoI	GCNNNNNNNGC	4 cut(s)	131, 472, 758, 1187
NcoI	CCATGG	1 cut(s)	827
NdeII	GATC	1 cut(s)	364
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	4 cut(s)	64, 301, 485, 831
NlaIV	GGNNCC	4 cut(s)	366, 822, 833, 1146
NmuCI	GTSAC	4 cut(s)	405, 696, 718, 925
NsiI	ATGCAT	1 cut(s)	266
OliI	CACNNNNGTG	1 cut(s)	239
PagI	TCATGA	1 cut(s)	481
PciSI	GCTCTTC	1 cut(s)	839
PctI	GAATGC	1 cut(s)	266
PflFI	GACNNNGTC	1 cut(s)	1045
PleI	GAGTC	2 cut(s)	292, 459
PpsI	GAGTC	2 cut(s)	292, 459
PspN4I	GGNNCC	4 cut(s)	366, 822, 833, 1146
PspPI	GGNCC	2 cut(s)	831, 983
PsuI	RGATCY	1 cut(s)	364
PsyI	GACNNNGTC	1 cut(s)	1045
RsaI	GTAC	1 cut(s)	1023
RsaNI	GTAC	1 cut(s)	1022
RseI	CAYNNNNRTG	2 cut(s)	239, 1197
SapI	GCTCTTC	1 cut(s)	839
SaqAI	TTAA	7 cut(s)	30, 267, 639, 978, 1032, 1118, 1215
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	2 cut(s)	831, 983
ScaI	AGTACT	1 cut(s)	1023
SchI	GAGTC	2 cut(s)	293, 460
SduI	GDGCHC	2 cut(s)	763, 851
SfaNI	GCATC	2 cut(s)	288, 652
SinI	GGWCC	2 cut(s)	831, 983
SmiMI	CAYNNNNRTG	2 cut(s)	239, 1197
SmlI	CTYRAG	3 cut(s)	218, 524, 638
SmoI	CTYRAG	3 cut(s)	218, 524, 638
Sse9I	AATT	9 cut(s)	54, 196, 211, 245, 455, 553, 810, 866, 1115
SsiI	CCGC	2 cut(s)	548, 622
SspMI	CTAG	5 cut(s)	84, 276, 536, 729, 945
StyI	CCWWGG	3 cut(s)	83, 827, 1109
TaaI	ACNGT	1 cut(s)	916
TaiI	ACGT	2 cut(s)	698, 772
TaqI	TCGA	8 cut(s)	42, 75, 258, 282, 287, 490, 508, 515
TaqII	GACCGA	1 cut(s)	388
TasI	AATT	9 cut(s)	54, 196, 211, 245, 455, 553, 810, 866, 1115
TatI	WGTACW	1 cut(s)	1021
Tru1I	TTAA	7 cut(s)	30, 267, 639, 978, 1032, 1118, 1215
Tru9I	TTAA	7 cut(s)	30, 267, 639, 978, 1032, 1118, 1215
TseFI	GTSAC	4 cut(s)	405, 696, 718, 925
Tsp45I	GTSAC	4 cut(s)	405, 696, 718, 925
TspDTI	ATGAA	3 cut(s)	452, 498, 1154
Tth111I	GACNNNGTC	1 cut(s)	1045
Vha464I	CTTAAG	1 cut(s)	638
VpaK11BI	GGWCC	2 cut(s)	831, 983
XapI	RAATTY	3 cut(s)	245, 553, 866
XmaJI	CCTAGG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	709
XspI	CTAG	5 cut(s)	84, 276, 536, 729, 945
ZrmI	AGTACT	1 cut(s)	1023
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.