Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Forward (+)

23091131 .. 23094233

Gene Structure 3103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32030.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGTCTCCCTCTTATCCTCCACCACCATTCTCAGAACTCACAACTCGTTCCCTAACTCACCGCTTCAACTCAGTAGTAGAGACTTCTGCATGGCTCTGTTAAGTCCACAACTGCAGAGGTTCCTCTTAACCAAATACAACTGCAGCGGTGGAGGTACTGGCTCATTCAAGACCTCACCCACCAACACCAACAAGAACAGTAGCAGCAGCTTTTCCAACAAGTCAACTACCCCACTATGCTCAGCGATTGCCATAGACGCGCCGGGATCGTCCTCTGCTGATGTCGCCGGAGTCAGGTGGGGCTCCACCAGCTTGCAGGGAGCGCGGGAAGAGATGGAAGACGGCGTTGTTGTCCGGTCCGATGGCCTTGACGGTTATTCATTTGCTGCGGTTTTTGATGGACATGCTGGCTTCTCCTCTGTCAAGTTTCTCAGAGATGAGCTCTACAAAGAGTGTTGTGAGGCTTTACAAGGCGGTTCGCTATTAAGTGGGAAGGATATCAAAGCTATTAGAGAGGCTTTACAGGAGGCATTTGAAAGAGTTGATGCAAAGTTGTTGAATTGGCTTGAGAGGAATGGGGAAGAAGATGAGTCTGGTTCAACAGCTACTGTTATGTTTGTTGGGAACGATATGCTTTTCATTTCACATGTTGGCGATTCGTCTGTGGTTCAGTCTTGTTCTGGAAAAGCAGAGGTGTTGACTAGCCCTCATCGACCATATGGAAGCAACAAGGTCTGTCTGCAAGAAATTAAAAGAATCAGAGAAGCAGGTGGATGGATCGTCAATGGAAGAATTTGTGGAGACATTGCTGTATCTCGCGCTTTTGGTGACATGCGGTTCAAGACAAAGAAAAACGAGATGCTGAAGAAAGGAGTTGAAGAAGGAAGATGGACGGAGAAATTTGTTTCTCGAGTGCAATTCAGTGGAGACCTTGTTACTGCAACTCCAGACATTTATCAAGCAAGTCTTGGGGCAGACTCAGAATTTCTAGTGTTAGCATCTGATGGCTTATGGGATTACATAAACAGCTCAGATGCGGTTTCATTTGTAAGGAATCAGCTTCGACAACACGGAGATGTCCAGCTAGCTTGTGACGCGCTTGCTCAAGCTGCTCTGGATAACAAGTCACAAGATAATATCAGCATCGTCATTGCGGATTTAGGGCGAACAGACTGGCAACGTTTGCCCTTCCAAAAACAAAATGTTGTATATGAATTTGGGCAAGCTTTTGCTACTATCGGGCTCGTTTCGCTTGGAATTTGGATGTCAACATCGTTGCTTTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

430

Amino Acids

46.56

Weight (kDa)

5.44

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	101 - 284	6.4e-30	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	758
Acc36I	ACCTGC	1 cut(s)	758
AccII	CGCG	4 cut(s)	260, 325, 819, 1097
AciI	CCGC	8 cut(s)	62, 147, 325, 389, 474, 835, 1037, 1154
AclI	AACGTT	1 cut(s)	1180
AclWI	GGATC	2 cut(s)	274, 785
AcsI	RAATTY	5 cut(s)	792, 899, 983, 1214, 1257
AcuI	CTGAAG	1 cut(s)	884
AfaI	GTAC	1 cut(s)	157
AfiI	CCNNNNNNNGG	1 cut(s)	294
AflIII	ACRYGT	1 cut(s)	646
AgsI	TTSAA	7 cut(s)	68, 169, 536, 559, 600, 841, 878
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	4 cut(s)	10, 75, 795, 921
AlwI	GGATC	2 cut(s)	274, 785
AlwNI	CAGNNNCTG	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	909
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	5 cut(s)	144, 204, 207, 386, 1109
ApoI	RAATTY	5 cut(s)	792, 899, 983, 1214, 1257
AspLEI	GCGC	4 cut(s)	262, 325, 821, 1099
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	3 cut(s)	51, 168, 839
AsuNHI	GCTAGC	1 cut(s)	1084
AvaI	CYCGRG	1 cut(s)	909
AvaII	GGWCC	1 cut(s)	357
BanII	GRGCYC	3 cut(s)	305, 444, 1245
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	5 cut(s)	156, 216, 219, 373, 1096
BccI	CCATC	6 cut(s)	328, 356, 392, 768, 882, 998
BceAI	ACGGC	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	4 cut(s)	10, 75, 795, 921
BfaI	CTAG	3 cut(s)	702, 989, 1085
BfmI	CTRYAG	2 cut(s)	113, 142
BfuAI	ACCTGC	1 cut(s)	758
BisI	GCNGC	5 cut(s)	145, 205, 208, 387, 1110
BlpI	GCTNAGC	1 cut(s)	241
BlsI	GCNGC	5 cut(s)	146, 206, 209, 388, 1111
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	909
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	2 cut(s)	122, 304
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	5 cut(s)	535, 849, 1007, 1024, 1152
BmtI	GCTAGC	1 cut(s)	1088
BpiI	GAAGAC	1 cut(s)	345
BplI	GAGNNNNNCTC	2 cut(s)	426, 458
BpmI	CTGGAG	1 cut(s)	930
Bpu1102I	GCTNAGC	1 cut(s)	241
BpuEI	CTTGAG	2 cut(s)	587, 1089
BpuMI	CCSGG	1 cut(s)	264
BsaI	GGTCTC	2 cut(s)	10, 921
BsaWI	WCCGGW	1 cut(s)	354
BsaXI	ACNNNNNCTCC	4 cut(s)	918, 928, 948, 958
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse1I	ACTGG	2 cut(s)	163, 1178
Bse3DI	GCAATG	2 cut(s)	804, 1149
BseGI	GGATG	2 cut(s)	779, 1269
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	2 cut(s)	804, 1149
BseMII	CTCAG	6 cut(s)	46, 85, 255, 445, 993, 1044
BseNI	ACTGG	2 cut(s)	163, 1178
BseRI	GAGGAG	1 cut(s)	406
BseXI	GCAGC	5 cut(s)	156, 216, 219, 373, 1096
Bsh1236I	CGCG	4 cut(s)	260, 325, 819, 1097
BshFI	GGCC	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	909
BsiSI	CCGG	3 cut(s)	263, 288, 355
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	4 cut(s)	10, 75, 795, 921
BsnI	GGCC	1 cut(s)	366
Bso31I	GGTCTC	2 cut(s)	10, 921
BsoBI	CYCGRG	1 cut(s)	909
Bsp1286I	GDGCHC	3 cut(s)	305, 444, 1245
Bsp143I	GATC	2 cut(s)	266, 777
Bsp1720I	GCTNAGC	1 cut(s)	241
BspACI	CCGC	8 cut(s)	62, 147, 325, 389, 474, 835, 1037, 1154
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	6 cut(s)	45, 84, 254, 444, 992, 1043
BspFNI	CGCG	4 cut(s)	260, 325, 819, 1097
BspHI	TCATGA	1 cut(s)	1286
BspLI	GGNNCC	2 cut(s)	122, 304
BspMAI	CTGCAG	2 cut(s)	117, 146
BspMI	ACCTGC	1 cut(s)	758
BspOI	GCTAGC	1 cut(s)	1088
BspPI	GGATC	2 cut(s)	274, 785
BspTNI	GGTCTC	2 cut(s)	10, 921
BsrDI	GCAATG	2 cut(s)	804, 1149
BsrI	ACTGG	2 cut(s)	163, 1178
BssMI	GATC	2 cut(s)	266, 777
Bst4CI	ACNGT	3 cut(s)	200, 374, 610
Bst6I	CTCTTC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	1183
BstC8I	GCNNGC	5 cut(s)	314, 409, 1086, 1101, 1224
BstDEI	CTNAG	6 cut(s)	32, 71, 241, 431, 979, 1030
BstF5I	GGATG	2 cut(s)	779, 1269
BstFNI	CGCG	4 cut(s)	260, 325, 819, 1097
BstHHI	GCGC	4 cut(s)	262, 325, 821, 1099
BstKTI	GATC	2 cut(s)	269, 780
BstMAI	GTCTC	4 cut(s)	10, 75, 795, 921
BstMBI	GATC	2 cut(s)	266, 777
BstMWI	GCNNNNNNNGC	8 cut(s)	257, 284, 309, 322, 1094, 1109, 1183, 1249
BstNSI	RCATGY	3 cut(s)	407, 650, 835
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	2 cut(s)	113, 142
BstUI	CGCG	4 cut(s)	260, 325, 819, 1097
BstV1I	GCAGC	5 cut(s)	156, 216, 219, 373, 1096
BstV2I	GAAGAC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	779, 1269
BtsIMutI	CAGTG	1 cut(s)	928
BveI	ACCTGC	1 cut(s)	758
Cac8I	GCNNGC	5 cut(s)	314, 409, 1086, 1101, 1224
CaiI	CAGNNNCTG	1 cut(s)	608
CciI	TCATGA	1 cut(s)	1286
CfoI	GCGC	4 cut(s)	262, 325, 821, 1099
Cfr13I	GGNCC	1 cut(s)	357
CpoI	CGGWCCG	1 cut(s)	357
CseI	GACGC	2 cut(s)	266, 1103
Csp6I	GTAC	1 cut(s)	156
CspI	CGGWCCG	1 cut(s)	357
CviAII	CATG	5 cut(s)	91, 404, 647, 832, 1287
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	6 cut(s)	32, 71, 241, 431, 979, 1030
DpnI	GATC	2 cut(s)	268, 779
DpnII	GATC	2 cut(s)	266, 777
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	3 cut(s)	305, 444, 1245
Eco31I	GGTCTC	2 cut(s)	10, 921
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	884
Eco88I	CYCGRG	1 cut(s)	909
EcoICRI	GAGCTC	1 cut(s)	442
EcoRV	GATATC	1 cut(s)	499
EcoT38I	GRGCYC	3 cut(s)	305, 444, 1245
FaeI	CATG	5 cut(s)	94, 407, 650, 835, 1290
FalI	AAGNNNNNCTT	2 cut(s)	951, 983
FatI	CATG	5 cut(s)	90, 403, 646, 831, 1286
FauI	CCCGC	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	718
Fnu4HI	GCNGC	5 cut(s)	145, 205, 208, 387, 1110
FokI	GGATG	2 cut(s)	786, 1276
FriOI	GRGCYC	3 cut(s)	305, 444, 1245
Fsp4HI	GCNGC	5 cut(s)	145, 205, 208, 387, 1110
FspBI	CTAG	3 cut(s)	702, 989, 1085
GlaI	GCGC	4 cut(s)	261, 324, 820, 1098
GluI	GCNGC	5 cut(s)	145, 205, 208, 387, 1110
GsuI	CTGGAG	1 cut(s)	930
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	3 cut(s)	263, 288, 355
HgaI	GACGC	2 cut(s)	266, 1103
HhaI	GCGC	4 cut(s)	262, 325, 821, 1099
Hin1II	CATG	5 cut(s)	94, 407, 650, 835, 1290
Hin6I	GCGC	4 cut(s)	260, 323, 819, 1097
HinP1I	GCGC	4 cut(s)	260, 323, 819, 1097
HincII	GTYRAC	3 cut(s)	225, 699, 1269
HindII	GTYRAC	3 cut(s)	225, 699, 1269
HindIII	AAGCTT	1 cut(s)	1224
HinfI	GANTC	6 cut(s)	291, 590, 656, 756, 977, 1054
HpaII	CCGG	3 cut(s)	263, 288, 355
HphI	GGTGA	3 cut(s)	51, 168, 839
Hpy166II	GTNNAC	4 cut(s)	107, 225, 699, 1269
Hpy188I	TCNGA	7 cut(s)	35, 361, 434, 761, 982, 1003, 1033
Hpy188III	TCNNGA	7 cut(s)	169, 681, 841, 909, 947, 1115, 1287
Hpy8I	GTNNAC	4 cut(s)	107, 225, 699, 1269
HpyAV	CCTTC	3 cut(s)	487, 875, 1198
HpyCH4III	ACNGT	3 cut(s)	200, 374, 610
HpyCH4IV	ACGT	1 cut(s)	1180
HpyCH4V	TGCA	8 cut(s)	90, 115, 144, 316, 548, 742, 916, 941
HpyF10VI	GCNNNNNNNGC	8 cut(s)	257, 284, 309, 322, 1094, 1109, 1183, 1249
HpyF3I	CTNAG	6 cut(s)	32, 71, 241, 431, 979, 1030
HpySE526I	ACGT	1 cut(s)	1180
Hsp92II	CATG	5 cut(s)	94, 407, 650, 835, 1290
HspAI	GCGC	4 cut(s)	260, 323, 819, 1097
Kzo9I	GATC	2 cut(s)	266, 777
LmnI	GCTCC	2 cut(s)	308, 320
Lsp1109I	GCAGC	5 cut(s)	156, 216, 219, 373, 1096
LweI	GCATC	5 cut(s)	535, 849, 1007, 1024, 1152
MaeI	CTAG	3 cut(s)	702, 989, 1085
MaeII	ACGT	1 cut(s)	1180
MaeIII	GTNAC	4 cut(s)	827, 934, 1091, 1125
MalI	GATC	2 cut(s)	268, 779
MboI	GATC	2 cut(s)	266, 777
MboII	GAAGA	9 cut(s)	341, 350, 593, 596, 801, 877, 890, 897, 1275
MhlI	GDGCHC	3 cut(s)	305, 444, 1245
MluCI	AATT	8 cut(s)	559, 747, 792, 899, 917, 983, 1214, 1257
MlyI	GAGTC	3 cut(s)	300, 599, 971
MmeI	TCCRAC	1 cut(s)	240
MseI	TTAA	4 cut(s)	101, 128, 485, 750
MslI	CAYNNNNRTG	1 cut(s)	1074
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	3 cut(s)	263, 288, 355
MspR9I	CCNGG	1 cut(s)	264
MvnI	CGCG	4 cut(s)	260, 325, 819, 1097
MwoI	GCNNNNNNNGC	8 cut(s)	257, 284, 309, 322, 1094, 1109, 1183, 1249
NciI	CCSGG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	2 cut(s)	266, 777
NheI	GCTAGC	1 cut(s)	1084
NlaIII	CATG	5 cut(s)	94, 407, 650, 835, 1290
NlaIV	GGNNCC	2 cut(s)	122, 304
NmuCI	GTSAC	3 cut(s)	827, 1091, 1125
NspI	RCATGY	3 cut(s)	407, 650, 835
PaeR7I	CTCGAG	1 cut(s)	909
PagI	TCATGA	1 cut(s)	1286
PaqCI	CACCTGC	1 cut(s)	758
PciI	ACATGT	1 cut(s)	646
PfeI	GAWTC	3 cut(s)	656, 756, 1054
PkrI	GCNGC	5 cut(s)	146, 206, 209, 388, 1111
PleI	GAGTC	3 cut(s)	299, 598, 971
PpsI	GAGTC	3 cut(s)	299, 598, 971
PscI	ACATGT	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	444
Psp1406I	AACGTT	1 cut(s)	1180
PspN4I	GGNNCC	2 cut(s)	122, 304
PspPI	GGNCC	1 cut(s)	357
PstI	CTGCAG	2 cut(s)	117, 146
PstNI	CAGNNNCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	1074
Rsr2I	CGGWCCG	1 cut(s)	357
RsrII	CGGWCCG	1 cut(s)	357
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	4 cut(s)	101, 128, 485, 750
SatI	GCNGC	5 cut(s)	145, 205, 208, 387, 1110
Sau3AI	GATC	2 cut(s)	266, 777
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	3 cut(s)	300, 599, 971
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	3 cut(s)	305, 444, 1245
SfaNI	GCATC	5 cut(s)	535, 849, 1007, 1024, 1152
SfcI	CTRYAG	2 cut(s)	113, 142
Sfr274I	CTCGAG	1 cut(s)	909
SinI	GGWCC	1 cut(s)	357
SlaI	CTCGAG	1 cut(s)	909
SmiMI	CAYNNNNRTG	1 cut(s)	1074
SmlI	CTYRAG	3 cut(s)	566, 909, 1104
SmoI	CTYRAG	3 cut(s)	566, 909, 1104
Sse9I	AATT	8 cut(s)	559, 747, 792, 899, 917, 983, 1214, 1257
SsiI	CCGC	8 cut(s)	62, 147, 325, 389, 474, 835, 1037, 1154
SspMI	CTAG	3 cut(s)	702, 989, 1085
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	200, 374, 610
TaiI	ACGT	1 cut(s)	1183
TaqI	TCGA	3 cut(s)	712, 910, 1063
TasI	AATT	8 cut(s)	559, 747, 792, 899, 917, 983, 1214, 1257
TfiI	GAWTC	3 cut(s)	656, 756, 1054
Tru1I	TTAA	4 cut(s)	101, 128, 485, 750
Tru9I	TTAA	4 cut(s)	101, 128, 485, 750
TscAI	CASTG	1 cut(s)	928
TseFI	GTSAC	3 cut(s)	827, 1091, 1125
TseI	GCWGC	5 cut(s)	144, 204, 207, 386, 1109
Tsp45I	GTSAC	3 cut(s)	827, 1091, 1125
TspDTI	ATGAA	5 cut(s)	369, 628, 1032, 1227, 1275
TspGWI	ACGGA	2 cut(s)	908, 1086
TspRI	CASTG	1 cut(s)	928
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	5 cut(s)	792, 899, 983, 1214, 1257
XceI	RCATGY	3 cut(s)	407, 650, 835
XhoI	CTCGAG	1 cut(s)	909
XspI	CTAG	3 cut(s)	702, 989, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.