Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010385.1

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Reverse (-)

36536 .. 37412

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010385.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggccactggagcaatcaatgtggtacgaggttcaaggtcatcagttgaagaattgatacaaatatacaatcactctgaaagtgttcaattcagtggagaccttgttactgcatctccagacgtttatcaagcaagtctaggggcagactcagaatttctagtgttggcaactgatggtttatgggattacataaacagttcagatgcagtttcttttgtaaggaatcagcttcgacaacatggagatgtccagctagcttgttatgcgcttgctgaagctgctctggcaacaactaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

100

Amino Acids

10.71

Weight (kDa)

4.24

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	36, 50, 89
AluBI	AGCT	4 cut(s)	232, 256, 260, 281
AluI	AGCT	4 cut(s)	232, 256, 260, 281
Alw26I	GTCTC	1 cut(s)	93
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	155
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	271
AsuNHI	GCTAGC	1 cut(s)	256
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	93
BfaI	CTAG	3 cut(s)	140, 161, 257
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmsI	GCATC	2 cut(s)	122, 196
BmtI	GCTAGC	1 cut(s)	260
BpmI	CTGGAG	2 cut(s)	30, 102
BsaI	GGTCTC	1 cut(s)	93
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 100, 120, 130
Bse1I	ACTGG	1 cut(s)	13
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	164
BspOI	GCTAGC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	13
Bst4CI	ACNGT	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	258, 273
BstDEI	CTNAG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 266, 281, 287
BstV1I	GCAGC	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	6, 100
Cac8I	GCNNGC	2 cut(s)	258, 273
CfoI	GCGC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	26
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	5 cut(s)	5, 232, 256, 260, 281
CviKI_1	RGCY	5 cut(s)	5, 232, 256, 260, 281
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	297
FaeI	CATG	1 cut(s)	245
FaiI	YATR	5 cut(s)	67, 184, 194, 243, 267
FatI	CATG	1 cut(s)	241
Fnu4HI	GCNGC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	3 cut(s)	140, 161, 257
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	1 cut(s)	282
GsuI	CTGGAG	2 cut(s)	30, 102
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	2 cut(s)	149, 226
Hpy188I	TCNGA	3 cut(s)	79, 154, 205
Hpy188III	TCNNGA	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	2 cut(s)	113, 209
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 266, 281, 287
HpyF3I	CTNAG	1 cut(s)	151
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	269
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	3 cut(s)	132, 266, 272
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	2 cut(s)	122, 196
MaeI	CTAG	3 cut(s)	140, 161, 257
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	53, 89, 155, 298
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	1 cut(s)	23
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	4 cut(s)	11, 266, 281, 287
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	245
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	1 cut(s)	282
SchI	GAGTC	1 cut(s)	143
SetI	ASST	8 cut(s)	34, 41, 105, 126, 234, 258, 262, 283
SfaNI	GCATC	2 cut(s)	122, 196
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	4 cut(s)	53, 89, 155, 298
SspMI	CTAG	3 cut(s)	140, 161, 257
TaaI	ACNGT	1 cut(s)	200
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	235
TasI	AATT	4 cut(s)	53, 89, 155, 298
TfiI	GAWTC	1 cut(s)	226
TscAI	CASTG	2 cut(s)	13, 100
TseI	GCWGC	1 cut(s)	281
TspRI	CASTG	2 cut(s)	13, 100
XapI	RAATTY	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	3 cut(s)	140, 161, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.