pycom01g23250

Protein phosphatase 2C 57-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
20620770 .. 20623550
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23250.3

Sequence Viewer

Length: 1170 bp
ATGGCTTTGATAAGCCCACAGCTGCATAGGTTCCTCCTAACCAAATACCACGGCGGCTCATTCAAGAGCGCCGCCGAAAAAAGCAGCTTTAACATAAAAGCTAGAAGCAGAAGCTGCTCCGCCATTGCAATAGACGCGCCGGGTTCTGCCCTGACCGACGTGGGGGGAATCCGATGGGGTTCGACGAGTCTGCAGGGTGCCCGGGAGGAGATGGAAGACGCTGTCGTTGTCCGGTCTGATGGCCTTGAAGGGTTCTCATTTGCCGCCGTTTTTGACGGCCATGCAGGGTTCAACTCGGTCAAGTTCCTCAGGGAAGAGCTCTACAAGGAGTGTTGTGCGGCTTTGCAGGGCGGGCTGCTACTGCGTGGAAACGACTTCAAGGCCATTAGAGAAGCATTGCAGGAGGCGTTTGAAAAAGTTGACTCCAAATTGTTAAACTGGCTCGAAAGCAATGGGGAGGAAGATGAATCTGGTTCGACAGCTACCCTGCTGTTCGTTGGAAATGATACACTGGTCATTTCACATGTTGGTGATTCTTGTGTGGTTCAATCTTGTTCTGGAAAGGCGGAGGTGCTTACGCATCCTCATAGACCGTACGGGAGCAACAAGGCCTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGATCAGCAACGGAAGAATTTGTGGTGACATTGCTGTCTCTCGTGCTTTTGGTGACATGCGGTTCAAGACAAAGAAAAACGAGATGGTGAAGAAAGGAGTTGAAGGAGGGAGATGGACAGAAAAATTTGCTTCTCGAGTACAATTCAGTGGAGACCTTGTTACTGCATCTCCAGATGTTTTTCAAGTGACTTTCGGGACAGATTCAGAATTTGTCCTGTTAGCATCGGATGGCTTATGGGACTACATAAACAGCTCAGATGCGGTGACTTTTGTGAGGAATCAGCTTCGAGAACATGGAGATGTGCAGCTAGCTTGCGATGCGCTTGCTGAAGCTGCTCTGATCGATCAACGCTCGCAAGATAACATCAGCATTGTCATAGCAGATTTAGGGCGGACAGACTGGCAAGGTTTGCCATTTCAACAACAAAATGTTGTATATGAATTCGGCCAAGCTTTTGCTACGGTTGGGATTGTGTCGCTCGGAATTTCGATCTCAACATCTTTGCTTTCAACATGA

Protein Analysis

390

Amino Acids

42.19

Weight (kDa)

5.31

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 635
AasI GACNNNNNNGTC 1 cut(s) 686
Acc36I ACCTGC 1 cut(s) 635
AccB1I GGYRCC 1 cut(s) 197
AccII CGCG 1 cut(s) 137
AclWI GGATC 1 cut(s) 662
AcoI YGGCCR 2 cut(s) 277, 1099
AcsI RAATTY 5 cut(s) 669, 776, 860, 1094, 1137
AcuI CTGAAG 1 cut(s) 1002
AfaI GTAC 2 cut(s) 596, 792
AfiI CCNNNNNNNGG 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 523
AjiI CACGTC 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 694, 798
AlwI GGATC 1 cut(s) 662
AlwNI CAGNNNCTG 1 cut(s) 114
Ama87I CYCGRG 2 cut(s) 201, 786
AoxI GGCC 5 cut(s) 241, 277, 381, 609, 1099
ApeKI GCWGC 6 cut(s) 22, 84, 114, 355, 958, 986
ApoI RAATTY 5 cut(s) 669, 776, 860, 1094, 1137
AspLEI GCGC 3 cut(s) 71, 139, 976
AsuC2I CCSGG 3 cut(s) 141, 202, 203
AsuHPI GGTGA 5 cut(s) 542, 689, 716, 751, 928
AsuNHI GCTAGC 1 cut(s) 961
AvaI CYCGRG 2 cut(s) 201, 786
AxyI CCTNAGG 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 202
BaeI ACNNNNGTAYC 2 cut(s) 498, 531
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 321
BauI CACGAG 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 6 cut(s) 9, 96, 101, 342, 970, 973
BccI CCATC 7 cut(s) 168, 205, 233, 645, 730, 759, 875
BceAI ACGGC 3 cut(s) 67, 251, 292
BcgI CGANNNNNNTGC 4 cut(s) 172, 206, 959, 993
BcnI CCSGG 3 cut(s) 141, 202, 203
BcoDI GTCTC 2 cut(s) 694, 798
BfaI CTAG 2 cut(s) 102, 962
BfmI CTRYAG 1 cut(s) 191
BfoI RGCGCY 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 635
Bme1390I CCNGG 3 cut(s) 141, 202, 203
BmeT110I CYCGRG 2 cut(s) 201, 786
BmgBI CACGTC 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 32, 199
BmrFI CCNGG 3 cut(s) 141, 202, 203
BmsI GCATC 5 cut(s) 589, 827, 884, 901, 961
BmtI GCTAGC 1 cut(s) 965
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 807
BpuMI CCSGG 3 cut(s) 141, 202, 203
Bsa29I ATCGAT 1 cut(s) 996
BsaI GGTCTC 1 cut(s) 798
BsaJI CCNNGG 2 cut(s) 49, 201
BsaWI WCCGGW 1 cut(s) 231
BsaXI ACNNNNNCTCC 4 cut(s) 795, 805, 825, 835
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 3 cut(s) 443, 516, 1058
Bse21I CCTNAGG 1 cut(s) 308
Bse3DI GCAATG 4 cut(s) 123, 395, 457, 681
BseCI ATCGAT 1 cut(s) 996
BseDI CCNNGG 2 cut(s) 49, 201
BseGI GGATG 3 cut(s) 580, 656, 886
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 4 cut(s) 123, 395, 457, 681
BseMII CTCAG 2 cut(s) 322, 921
BseNI ACTGG 3 cut(s) 443, 516, 1058
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 6 cut(s) 9, 96, 101, 342, 970, 973
BsgI GTGCAG 1 cut(s) 977
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 5 cut(s) 243, 279, 383, 611, 1101
BshNI GGYRCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 996
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 2 cut(s) 201, 786
BsiSI CCGG 3 cut(s) 140, 202, 232
BsiWI CGTACG 1 cut(s) 594
BslFI GGGAC 2 cut(s) 862, 905
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 694, 798
BsmFI GGGAC 2 cut(s) 862, 905
BsnI GGCC 5 cut(s) 243, 279, 383, 611, 1101
Bso31I GGTCTC 1 cut(s) 798
BsoBI CYCGRG 2 cut(s) 201, 786
Bsp1286I GDGCHC 2 cut(s) 202, 321
Bsp143I GATC 4 cut(s) 654, 993, 997, 1143
BspANI GGCC 5 cut(s) 243, 279, 383, 611, 1101
BspCNI CTCAG 2 cut(s) 321, 920
BspDI ATCGAT 1 cut(s) 996
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 2 cut(s) 32, 199
BspMAI CTGCAG 1 cut(s) 195
BspMI ACCTGC 1 cut(s) 635
BspOI GCTAGC 1 cut(s) 965
BspPI GGATC 1 cut(s) 662
BspQI GCTCTTC 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 798
BsrDI GCAATG 4 cut(s) 123, 395, 457, 681
BsrI ACTGG 3 cut(s) 443, 516, 1058
BssECI CCNNGG 2 cut(s) 49, 201
BssMI GATC 4 cut(s) 654, 993, 997, 1143
BssSI CACGAG 1 cut(s) 693
Bst2BI CACGAG 1 cut(s) 693
Bst4CI ACNGT 2 cut(s) 594, 1117
Bst6I CTCTTC 2 cut(s) 309, 621
BstAPI GCANNNNNTGC 2 cut(s) 114, 1063
BstC8I GCNNGC 5 cut(s) 353, 963, 967, 978, 1007
BstDEI CTNAG 2 cut(s) 308, 907
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 3 cut(s) 580, 656, 886
BstFNI CGCG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 3 cut(s) 71, 139, 976
BstKTI GATC 4 cut(s) 657, 996, 1000, 1146
BstMAI GTCTC 2 cut(s) 694, 798
BstMBI GATC 4 cut(s) 654, 993, 997, 1143
BstMWI GCNNNNNNNGC 7 cut(s) 114, 134, 352, 361, 971, 986, 1063
BstNSI RCATGY 2 cut(s) 527, 712
BstSCI CCNGG 3 cut(s) 139, 200, 201
BstSFI CTRYAG 1 cut(s) 191
BstSLI GKGCMC 1 cut(s) 202
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 6 cut(s) 9, 96, 101, 342, 970, 973
BstV2I GAAGAC 1 cut(s) 222
Bsu15I ATCGAT 1 cut(s) 996
Bsu36I CCTNAGG 1 cut(s) 308
BsuRI GGCC 5 cut(s) 243, 279, 383, 611, 1101
BsuTUI ATCGAT 1 cut(s) 996
BtgI CCRYGG 1 cut(s) 49
BtgZI GCGATG 1 cut(s) 984
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 3 cut(s) 580, 656, 886
BtsIMutI CAGTG 2 cut(s) 509, 805
BveI ACCTGC 1 cut(s) 635
Cac8I GCNNGC 5 cut(s) 353, 963, 967, 978, 1007
CaiI CAGNNNCTG 1 cut(s) 114
CfoI GCGC 3 cut(s) 71, 139, 976
Cfr9I CCCGGG 1 cut(s) 201
ClaI ATCGAT 1 cut(s) 996
CseI GACGC 2 cut(s) 143, 227
Csp6I GTAC 2 cut(s) 595, 791
CviAII CATG 5 cut(s) 281, 524, 709, 947, 1167
CviQI GTAC 2 cut(s) 595, 791
DdeI CTNAG 2 cut(s) 308, 907
DpnI GATC 4 cut(s) 656, 995, 999, 1145
DpnII GATC 4 cut(s) 654, 993, 997, 1143
DrdI GACNNNNNNGTC 1 cut(s) 686
DseDI GACNNNNNNGTC 1 cut(s) 686
EaeI YGGCCR 2 cut(s) 277, 1099
Eam1104I CTCTTC 2 cut(s) 309, 621
EarI CTCTTC 2 cut(s) 309, 621
EciI GGCGGA 3 cut(s) 109, 581, 1060
Ecl136II GAGCTC 1 cut(s) 319
Eco147I AGGCCT 1 cut(s) 611
Eco24I GRGCYC 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 798
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 1002
Eco81I CCTNAGG 1 cut(s) 308
Eco88I CYCGRG 2 cut(s) 201, 786
EcoICRI GAGCTC 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 1094
EcoT38I GRGCYC 1 cut(s) 321
FaeI CATG 5 cut(s) 284, 527, 712, 950, 1170
FaqI GGGAC 2 cut(s) 862, 905
FatI CATG 5 cut(s) 280, 523, 708, 946, 1166
FauI CCCGC 1 cut(s) 344
FokI GGATG 3 cut(s) 567, 663, 893
FriOI GRGCYC 1 cut(s) 321
FspBI CTAG 2 cut(s) 102, 962
GlaI GCGC 3 cut(s) 70, 138, 975
GsuI CTGGAG 1 cut(s) 807
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 5 cut(s) 243, 279, 383, 611, 1101
HapII CCGG 3 cut(s) 140, 202, 232
HgaI GACGC 2 cut(s) 143, 227
HhaI GCGC 3 cut(s) 71, 139, 976
Hin1II CATG 5 cut(s) 284, 527, 712, 950, 1170
Hin6I GCGC 3 cut(s) 69, 137, 974
HinP1I GCGC 3 cut(s) 69, 137, 974
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 1104
HinfI GANTC 8 cut(s) 168, 187, 422, 467, 533, 633, 854, 931
HpaII CCGG 3 cut(s) 140, 202, 232
HphI GGTGA 5 cut(s) 542, 689, 716, 751, 928
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 8 cut(s) 173, 238, 638, 859, 880, 910, 993, 1136
Hpy188III TCNNGA 8 cut(s) 64, 558, 620, 718, 786, 824, 847, 941
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 2 cut(s) 161, 187
HpyAV CCTTC 2 cut(s) 242, 749
HpyCH4III ACNGT 2 cut(s) 594, 1117
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 8 cut(s) 25, 128, 193, 284, 346, 400, 818, 958
HpyF10VI GCNNNNNNNGC 7 cut(s) 114, 134, 352, 361, 971, 986, 1063
HpyF3I CTNAG 2 cut(s) 308, 907
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 5 cut(s) 284, 527, 712, 950, 1170
HspAI GCGC 3 cut(s) 69, 137, 974
Kzo9I GATC 4 cut(s) 654, 993, 997, 1143
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 2 cut(s) 122, 600
Lsp1109I GCAGC 6 cut(s) 9, 96, 101, 342, 970, 973
LweI GCATC 5 cut(s) 589, 827, 884, 901, 961
MaeI CTAG 2 cut(s) 102, 962
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 5 cut(s) 677, 704, 811, 838, 916
MalI GATC 4 cut(s) 656, 995, 999, 1145
MboI GATC 4 cut(s) 654, 993, 997, 1143
MboII GAAGA 6 cut(s) 227, 326, 473, 608, 678, 754
MhlI GDGCHC 2 cut(s) 202, 321
MluCI AATT 7 cut(s) 428, 669, 776, 794, 860, 1094, 1137
MlyI GAGTC 2 cut(s) 196, 416
MmeI TCCRAC 1 cut(s) 478
MseI TTAA 2 cut(s) 90, 434
MslI CAYNNNNRTG 2 cut(s) 528, 951
MspA1I CMGCKG 1 cut(s) 22
MspI CCGG 3 cut(s) 140, 202, 232
MspR9I CCNGG 3 cut(s) 141, 202, 203
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 7 cut(s) 114, 134, 352, 361, 971, 986, 1063
NciI CCSGG 3 cut(s) 141, 202, 203
NdeII GATC 4 cut(s) 654, 993, 997, 1143
NheI GCTAGC 1 cut(s) 961
NlaIII CATG 5 cut(s) 284, 527, 712, 950, 1170
NlaIV GGNNCC 2 cut(s) 32, 199
NmuCI GTSAC 4 cut(s) 677, 704, 838, 916
NspI RCATGY 2 cut(s) 527, 712
PaeR7I CTCGAG 1 cut(s) 786
PaqCI CACCTGC 1 cut(s) 635
PceI AGGCCT 1 cut(s) 611
PciI ACATGT 1 cut(s) 523
PciSI GCTCTTC 1 cut(s) 309
PfeI GAWTC 6 cut(s) 168, 467, 533, 633, 854, 931
Pfl23II CGTACG 1 cut(s) 594
PflFI GACNNNGTC 1 cut(s) 221
PleI GAGTC 2 cut(s) 195, 416
PpsI GAGTC 2 cut(s) 195, 416
PscI ACATGT 1 cut(s) 523
Psp124BI GAGCTC 1 cut(s) 321
PspLI CGTACG 1 cut(s) 594
PspN4I GGNNCC 2 cut(s) 32, 199
PstI CTGCAG 1 cut(s) 195
PstNI CAGNNNCTG 1 cut(s) 114
PsyI GACNNNGTC 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 2 cut(s) 596, 792
RsaNI GTAC 2 cut(s) 595, 791
RseI CAYNNNNRTG 2 cut(s) 528, 951
SacI GAGCTC 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 2 cut(s) 90, 434
Sau3AI GATC 4 cut(s) 654, 993, 997, 1143
SchI GAGTC 2 cut(s) 196, 416
ScrFI CCNGG 3 cut(s) 141, 202, 203
SduI GDGCHC 2 cut(s) 202, 321
SfaNI GCATC 5 cut(s) 589, 827, 884, 901, 961
SfcI CTRYAG 1 cut(s) 191
Sfr274I CTCGAG 1 cut(s) 786
SlaI CTCGAG 1 cut(s) 786
SmaI CCCGGG 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 528, 951
SmlI CTYRAG 1 cut(s) 786
SmoI CTYRAG 1 cut(s) 786
Sse9I AATT 7 cut(s) 428, 669, 776, 794, 860, 1094, 1137
SseBI AGGCCT 1 cut(s) 611
SspMI CTAG 2 cut(s) 102, 962
SstI GAGCTC 1 cut(s) 321
StuI AGGCCT 1 cut(s) 611
StyD4I CCNGG 3 cut(s) 139, 200, 201
TaaI ACNGT 2 cut(s) 594, 1117
TaiI ACGT 1 cut(s) 162
TaqI TCGA 7 cut(s) 182, 444, 476, 787, 940, 996, 1142
TaqII GACCGA 2 cut(s) 170, 286
TasI AATT 7 cut(s) 428, 669, 776, 794, 860, 1094, 1137
TatI WGTACW 1 cut(s) 790
TauI GCSGC 4 cut(s) 57, 74, 266, 341
TfiI GAWTC 6 cut(s) 168, 467, 533, 633, 854, 931
Tru1I TTAA 2 cut(s) 90, 434
Tru9I TTAA 2 cut(s) 90, 434
TscAI CASTG 2 cut(s) 516, 805
TseFI GTSAC 4 cut(s) 677, 704, 838, 916
TseI GCWGC 6 cut(s) 22, 84, 114, 355, 958, 986
Tsp45I GTSAC 4 cut(s) 677, 704, 838, 916
TspDTI ATGAA 2 cut(s) 480, 1107
TspGWI ACGGA 1 cut(s) 678
TspMI CCCGGG 1 cut(s) 201
TspRI CASTG 2 cut(s) 516, 805
Tth111I GACNNNGTC 1 cut(s) 221
XapI RAATTY 5 cut(s) 669, 776, 860, 1094, 1137
XceI RCATGY 2 cut(s) 527, 712
XhoI CTCGAG 1 cut(s) 786
XmaI CCCGGG 1 cut(s) 201
XspI CTAG 2 cut(s) 102, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.