Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Forward (+)

25893214 .. 25893414

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0265500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGCGTCACCCACTCCCGGAATCCTCCTCCGGCTCCTCCAGTCCATGAACTCCGCCACCAAAGTCACCGGCGACCATCGCTCTGCCCTGCTCCAAGTCATCGGCATAGTCCCCGCCCTGCTCCGACGACCTCTGGCCCAACCAAGGCTTCTACGTCCAGCTCTCCTACTCCCTCAACTCCACCTACGTCGCCCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

66

Amino Acids

7.26

Weight (kDa)

12.0

Isoelectric Point (pI)

89.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF936	PF06075	5 - 40	8.7e-13	Plant protein of unknown function (DUF936)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	54, 114
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	17, 144
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
AoxI	GGCC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	58
BccI	CCATC	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 144
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	143
BseLI	CCNNNNNNNGG	2 cut(s)	17, 144
BseNI	ACTGG	1 cut(s)	40
BseRI	GAGGAG	2 cut(s)	17, 26
BshFI	GGCC	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	18, 31, 69
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	17, 144
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	137
BspACI	CCGC	2 cut(s)	54, 114
BspANI	GGCC	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	143
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	143
BstACI	GRCGYC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	136
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	4 cut(s)	34, 137, 148, 161
CviKI_1	RGCY	4 cut(s)	34, 137, 148, 161
EciI	GGCGGA	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	1 cut(s)	49
FaiI	YATR	2 cut(s)	47, 107
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	45
FauI	CCCGC	1 cut(s)	121
GsuI	CTGGAG	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	3 cut(s)	18, 31, 69
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	49
HinfI	GANTC	1 cut(s)	21
HpaII	CCGG	3 cut(s)	18, 31, 69
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	125, 200
Hpy99I	CGWCG	2 cut(s)	129, 192
HpyCH4IV	ACGT	2 cut(s)	154, 187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpySE526I	ACGT	2 cut(s)	154, 187
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	49
LmnI	GCTCC	3 cut(s)	39, 96, 126
LpnPI	CCDG	8 cut(s)	31, 44, 53, 82, 101, 119, 131, 171
MaeII	ACGT	2 cut(s)	154, 187
MaeIII	GTNAC	2 cut(s)	6, 64
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	5 cut(s)	35, 38, 47, 141, 183
MspI	CCGG	3 cut(s)	18, 31, 69
MspR9I	CCNGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	78
NciI	CCSGG	1 cut(s)	18
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	2 cut(s)	6, 64
PfeI	GAWTC	1 cut(s)	21
PfoI	TCCNGGA	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	5 cut(s)	133, 157, 163, 186, 190
SgrAI	CRCCGGYG	1 cut(s)	68
SsiI	CCGC	2 cut(s)	54, 114
StyD4I	CCNGG	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	143
TaiI	ACGT	2 cut(s)	157, 190
TfiI	GAWTC	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	6, 64
Tsp45I	GTSAC	2 cut(s)	6, 64
TspDTI	ATGAA	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.