Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Forward (+)

67265907 .. 67269067

Gene Structure 3161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG453300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTCTGTTAAGTCCACAACTGCAGAGGTTCCTCTTAGCCAAGTACAACTGCAGCGGTGGAGGTGGAGGTGGCGCATTCAAGACCACAACCACAACAAACACCAACAAAAACAGTGGCTTTTGTAACAAGTCAACTACCCCACTCTGTTCGGCGATTGCTATAGACGCGCCGGGATCGTCCTCTGCCGCTGTCGCCGGAGTTCGGTGGGGATATACGAGCTTGCAGGGAGCGCGGGAAGAGATGGAAGACGGCGTTGTTGTCCGGTCCGATGGCCTTGATGCTTATTCATTCGCGGCGGTTTTTGATGGACATGCTGGCTTCTCCTCAGTCAAGTTCCTCAGAGATGAGCTCTACAAAGAGTGTTGTGCGGCTTTACAAGGTGGTTTGCTATTGAGTGGGAAAGATATCAAAGCCATTAGAGAGGCATTACAGGAGGCTTTTGAAAAAGTTGATGCAAAATTGTTGGATTGGCTTGAAAGGAATGGGGAGGAAGTTGAGTCTGGTTCAACAGCTACTGTTATGTTCGTTGGGAATGATATGATGTTCATTTCACATGTTGGCGATTCATCTGTGGTTCAATCTTGTTCTGGAAAAGCAGAAGTGTTGACCAGTCCTCATCGACCATATGGAAGCAACAAGGTCTGTCTTCAAGAAATTAAAAGAATCAGAGAAGCAGGTGGATGGATCGTCAATGGAAGAATTTGTGGAGACATTGCTGTATCTCGTGCTTTTGGTGACATGCGGTTCAAGACAAAGAAAAACGAGATGCTGAAGAAAGGAGTTGAAGAAGGAAGATGGACGGAGAAATTTGTTTCTCGTGTGCAATTCAGTGGAGACCTTGTTACTGCATCTCCAGACGTTTATCAAGCAAGTCTTGGGGCAGACTCAGAATTTCTAGTGCTAGCATCTGATGGCTTATGGGATTACATAAACAGTTCAGATGCGGTTTCTTTTGTAAGGAATCAGCTTCGACAACATGGAGATGTCCAGCTAGCTTGTGACGCGCTTGCTGAAGCTGCTCTGGTAACAACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

346

Amino Acids

37.16

Weight (kDa)

5.42

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	71 - 342	2.5e-49	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	668
Acc36I	ACCTGC	1 cut(s)	668
AccII	CGCG	4 cut(s)	170, 235, 296, 1007
AciI	CCGC	8 cut(s)	57, 189, 235, 296, 299, 371, 745, 947
AclWI	GGATC	2 cut(s)	184, 695
AcsI	RAATTY	3 cut(s)	702, 809, 893
AcuI	CTGAAG	2 cut(s)	794, 1035
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	204
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	8 cut(s)	82, 446, 479, 510, 581, 653, 751, 788
AluBI	AGCT	7 cut(s)	222, 352, 515, 970, 994, 998, 1019
AluI	AGCT	7 cut(s)	222, 352, 515, 970, 994, 998, 1019
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	2 cut(s)	705, 831
AlwI	GGATC	2 cut(s)	184, 695
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	54, 1019
ApoI	RAATTY	3 cut(s)	702, 809, 893
AspLEI	GCGC	4 cut(s)	77, 172, 235, 1009
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	749
AsuNHI	GCTAGC	2 cut(s)	904, 994
AvaII	GGWCC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	354
BauI	CACGAG	2 cut(s)	726, 819
BbsI	GAAGAC	2 cut(s)	255, 641
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	66, 1006
BccI	CCATC	6 cut(s)	238, 266, 302, 678, 792, 908
BceAI	ACGGC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	705, 831
BfaI	CTAG	3 cut(s)	899, 905, 995
BfmI	CTRYAG	3 cut(s)	23, 52, 162
BfuAI	ACCTGC	1 cut(s)	668
BisI	GCNGC	5 cut(s)	55, 189, 297, 372, 1020
BlsI	GCNGC	5 cut(s)	56, 190, 298, 373, 1021
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	267
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	6 cut(s)	271, 445, 759, 860, 917, 934
BmtI	GCTAGC	2 cut(s)	908, 998
BpiI	GAAGAC	2 cut(s)	255, 641
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
BpmI	CTGGAG	1 cut(s)	840
BpuMI	CCSGG	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	831
BsaWI	WCCGGW	1 cut(s)	264
BsaXI	ACNNNNNCTCC	4 cut(s)	828, 838, 858, 868
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	612
Bse3DI	GCAATG	1 cut(s)	714
BseGI	GGATG	1 cut(s)	689
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	3 cut(s)	342, 355, 903
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	66, 1006
Bsh1236I	CGCG	4 cut(s)	170, 235, 296, 1007
BshFI	GGCC	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	3 cut(s)	173, 198, 265
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	2 cut(s)	705, 831
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	276
Bso31I	GGTCTC	1 cut(s)	831
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	176, 687
BspACI	CCGC	8 cut(s)	57, 189, 235, 296, 299, 371, 745, 947
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	3 cut(s)	341, 354, 902
BspFNI	CGCG	4 cut(s)	170, 235, 296, 1007
BspLI	GGNNCC	1 cut(s)	32
BspMAI	CTGCAG	2 cut(s)	27, 56
BspMI	ACCTGC	1 cut(s)	668
BspOI	GCTAGC	2 cut(s)	908, 998
BspPI	GGATC	2 cut(s)	184, 695
BspTNI	GGTCTC	1 cut(s)	831
BsrDI	GCAATG	1 cut(s)	714
BsrI	ACTGG	1 cut(s)	612
BssMI	GATC	2 cut(s)	176, 687
BssSI	CACGAG	2 cut(s)	726, 819
Bst2BI	CACGAG	2 cut(s)	726, 819
Bst4CI	ACNGT	3 cut(s)	116, 520, 938
Bst6I	CTCTTC	1 cut(s)	234
BstC8I	GCNNGC	5 cut(s)	224, 319, 906, 996, 1011
BstDEI	CTNAG	4 cut(s)	37, 328, 341, 889
BstF5I	GGATG	1 cut(s)	689
BstFNI	CGCG	4 cut(s)	170, 235, 296, 1007
BstHHI	GCGC	4 cut(s)	77, 172, 235, 1009
BstKTI	GATC	2 cut(s)	179, 690
BstMAI	GTCTC	2 cut(s)	705, 831
BstMBI	GATC	2 cut(s)	176, 687
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 194, 232, 1004, 1019
BstNSI	RCATGY	3 cut(s)	317, 560, 745
BstSCI	CCNGG	1 cut(s)	172
BstSFI	CTRYAG	3 cut(s)	23, 52, 162
BstUI	CGCG	4 cut(s)	170, 235, 296, 1007
BstV1I	GCAGC	2 cut(s)	66, 1006
BstV2I	GAAGAC	2 cut(s)	255, 641
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	689
BtsIMutI	CAGTG	2 cut(s)	121, 838
BveI	ACCTGC	1 cut(s)	668
Cac8I	GCNNGC	5 cut(s)	224, 319, 906, 996, 1011
CaiI	CAGNNNCTG	1 cut(s)	518
CfoI	GCGC	4 cut(s)	77, 172, 235, 1009
Cfr13I	GGNCC	1 cut(s)	267
CpoI	CGGWCCG	1 cut(s)	267
CseI	GACGC	2 cut(s)	176, 1013
Csp6I	GTAC	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	97, 132
CspI	CGGWCCG	1 cut(s)	267
CviAII	CATG	4 cut(s)	314, 557, 742, 980
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	4 cut(s)	37, 328, 341, 889
DpnI	GATC	2 cut(s)	178, 689
DpnII	GATC	2 cut(s)	176, 687
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	831
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	267
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	2 cut(s)	794, 1035
EcoICRI	GAGCTC	1 cut(s)	352
EcoRV	GATATC	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	4 cut(s)	317, 560, 745, 983
FalI	AAGNNNNNCTT	2 cut(s)	861, 893
FatI	CATG	4 cut(s)	313, 556, 741, 979
FauI	CCCGC	1 cut(s)	228
FauNDI	CATATG	1 cut(s)	628
Fnu4HI	GCNGC	5 cut(s)	55, 189, 297, 372, 1020
FokI	GGATG	1 cut(s)	696
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	5 cut(s)	55, 189, 297, 372, 1020
FspBI	CTAG	3 cut(s)	899, 905, 995
GlaI	GCGC	4 cut(s)	76, 171, 234, 1008
GluI	GCNGC	5 cut(s)	55, 189, 297, 372, 1020
GsuI	CTGGAG	1 cut(s)	840
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	3 cut(s)	173, 198, 265
HgaI	GACGC	2 cut(s)	176, 1013
HhaI	GCGC	4 cut(s)	77, 172, 235, 1009
Hin1II	CATG	4 cut(s)	317, 560, 745, 983
Hin6I	GCGC	4 cut(s)	75, 170, 233, 1007
HinP1I	GCGC	4 cut(s)	75, 170, 233, 1007
HincII	GTYRAC	2 cut(s)	135, 609
HindII	GTYRAC	2 cut(s)	135, 609
HinfI	GANTC	5 cut(s)	500, 566, 666, 887, 964
HpaII	CCGG	3 cut(s)	173, 198, 265
HphI	GGTGA	1 cut(s)	749
Hpy166II	GTNNAC	3 cut(s)	17, 135, 609
Hpy188I	TCNGA	6 cut(s)	271, 344, 671, 892, 913, 943
Hpy188III	TCNNGA	5 cut(s)	82, 591, 653, 751, 857
Hpy8I	GTNNAC	3 cut(s)	17, 135, 609
HpyAV	CCTTC	1 cut(s)	785
HpyCH4III	ACNGT	3 cut(s)	116, 520, 938
HpyCH4IV	ACGT	1 cut(s)	861
HpyCH4V	TGCA	6 cut(s)	25, 54, 226, 458, 826, 851
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 194, 232, 1004, 1019
HpyF3I	CTNAG	4 cut(s)	37, 328, 341, 889
HpySE526I	ACGT	1 cut(s)	861
Hsp92II	CATG	4 cut(s)	317, 560, 745, 983
HspAI	GCGC	4 cut(s)	75, 170, 233, 1007
Kzo9I	GATC	2 cut(s)	176, 687
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	2 cut(s)	66, 1006
LweI	GCATC	6 cut(s)	271, 445, 759, 860, 917, 934
MaeI	CTAG	3 cut(s)	899, 905, 995
MaeII	ACGT	1 cut(s)	861
MaeIII	GTNAC	5 cut(s)	125, 737, 844, 1001, 1027
MalI	GATC	2 cut(s)	178, 689
MboI	GATC	2 cut(s)	176, 687
MboII	GAAGA	7 cut(s)	251, 260, 641, 711, 787, 800, 807
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	7 cut(s)	461, 657, 702, 809, 827, 893, 1036
MlyI	GAGTC	2 cut(s)	509, 881
MmeI	TCCRAC	1 cut(s)	447
MseI	TTAA	3 cut(s)	11, 660, 1039
MslI	CAYNNNNRTG	1 cut(s)	984
MspA1I	CMGCKG	2 cut(s)	57, 191
MspI	CCGG	3 cut(s)	173, 198, 265
MspR9I	CCNGG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	77
MvnI	CGCG	4 cut(s)	170, 235, 296, 1007
MwoI	GCNNNNNNNGC	5 cut(s)	167, 194, 232, 1004, 1019
NciI	CCSGG	1 cut(s)	174
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	2 cut(s)	176, 687
NheI	GCTAGC	2 cut(s)	904, 994
NlaIII	CATG	4 cut(s)	317, 560, 745, 983
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	2 cut(s)	737, 1001
NspI	RCATGY	3 cut(s)	317, 560, 745
PaqCI	CACCTGC	1 cut(s)	668
PciI	ACATGT	1 cut(s)	556
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	3 cut(s)	566, 666, 964
PkrI	GCNGC	5 cut(s)	56, 190, 298, 373, 1021
PleI	GAGTC	2 cut(s)	508, 881
PpsI	GAGTC	2 cut(s)	508, 881
PscI	ACATGT	1 cut(s)	556
Psp124BI	GAGCTC	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	267
PstI	CTGCAG	2 cut(s)	27, 56
PstNI	CAGNNNCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	984
Rsr2I	CGGWCCG	1 cut(s)	267
RsrII	CGGWCCG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	11, 660, 1039
SatI	GCNGC	5 cut(s)	55, 189, 297, 372, 1020
Sau3AI	GATC	2 cut(s)	176, 687
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	2 cut(s)	509, 881
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	6 cut(s)	271, 445, 759, 860, 917, 934
SfcI	CTRYAG	3 cut(s)	23, 52, 162
SinI	GGWCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	984
Sse9I	AATT	7 cut(s)	461, 657, 702, 809, 827, 893, 1036
SsiI	CCGC	8 cut(s)	57, 189, 235, 296, 299, 371, 745, 947
SspMI	CTAG	3 cut(s)	899, 905, 995
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	3 cut(s)	116, 520, 938
TaiI	ACGT	1 cut(s)	864
TaqI	TCGA	2 cut(s)	622, 973
TasI	AATT	7 cut(s)	461, 657, 702, 809, 827, 893, 1036
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	3 cut(s)	191, 299, 374
TfiI	GAWTC	3 cut(s)	566, 666, 964
Tru1I	TTAA	3 cut(s)	11, 660, 1039
Tru9I	TTAA	3 cut(s)	11, 660, 1039
TscAI	CASTG	2 cut(s)	121, 838
TseFI	GTSAC	2 cut(s)	737, 1001
TseI	GCWGC	2 cut(s)	54, 1019
Tsp45I	GTSAC	2 cut(s)	737, 1001
TspDTI	ATGAA	3 cut(s)	279, 538, 558
TspGWI	ACGGA	1 cut(s)	818
TspRI	CASTG	2 cut(s)	121, 838
VpaK11BI	GGWCC	1 cut(s)	267
XapI	RAATTY	3 cut(s)	702, 809, 893
XceI	RCATGY	3 cut(s)	317, 560, 745
XspI	CTAG	3 cut(s)	899, 905, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.