Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Reverse (-)

36344232 .. 36345110

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG297400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGATAATCAAGTTATGCACAATACTGACTGTTTTGATAAATGGAAAGGATCGATGCTGAAGAAAGGAGTTGAAGAAGGAAGATGGACGGAGAAATTTGTTTTTCGTGTTCAATTCAGTGGAGACCTTGTTACTGCATCTCCAGACGTTTATCAAGCAAGTCTAGGGGCAGACTCAGAATTTCTATGTGACACTCTTGATTACTCAGTAAAAATTTCATCTGATGGTTTATGGGATTACATAAACAATTCAGATGCAGTTTCTTTTGTAAGGAATCAGCTTCGACAACATGGAGATGTCCAGCTAGCTTGTTATGCGCTTGCTGAAGCTGCTCTGGCAACAACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

116

Amino Acids

13.0

Weight (kDa)

4.56

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	42 - 114	7.3e-09	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	58
AcsI	RAATTY	3 cut(s)	95, 179, 213
AcuI	CTGAAG	2 cut(s)	80, 345
AgsI	TTSAA	2 cut(s)	74, 113
AluBI	AGCT	4 cut(s)	280, 304, 308, 329
AluI	AGCT	4 cut(s)	280, 304, 308, 329
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	3 cut(s)	95, 179, 213
AspLEI	GCGC	1 cut(s)	319
AsuNHI	GCTAGC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	2 cut(s)	78, 218
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	2 cut(s)	164, 305
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
BmsI	GCATC	3 cut(s)	45, 146, 244
BmtI	GCTAGC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	126
Bsa29I	ATCGAT	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	117
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 124, 144, 154
BseCI	ATCGAT	1 cut(s)	53
BseMII	CTCAG	2 cut(s)	189, 219
BseXI	GCAGC	1 cut(s)	316
BshVI	ATCGAT	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	117
Bso31I	GGTCTC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	188, 218
BspDI	ATCGAT	1 cut(s)	53
BspOI	GCTAGC	1 cut(s)	308
BspPI	GGATC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	117
BssMI	GATC	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	306, 321
BstDEI	CTNAG	2 cut(s)	175, 205
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	53
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 329, 335
BstV1I	GCAGC	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	53
BsuTUI	ATCGAT	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	306, 321
CfoI	GCGC	1 cut(s)	319
ClaI	ATCGAT	1 cut(s)	53
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	4 cut(s)	280, 304, 308, 329
CviKI_1	RGCY	4 cut(s)	280, 304, 308, 329
DdeI	CTNAG	2 cut(s)	175, 205
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	80, 345
FaeI	CATG	1 cut(s)	293
FaiI	YATR	6 cut(s)	17, 187, 232, 242, 291, 315
FatI	CATG	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	164, 305
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	126
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	293
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	2 cut(s)	173, 274
Hpy188I	TCNGA	3 cut(s)	178, 223, 253
Hpy188III	TCNNGA	2 cut(s)	143, 197
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	3 cut(s)	19, 137, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 329, 335
HpyF3I	CTNAG	2 cut(s)	175, 205
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	293
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	3 cut(s)	156, 314, 320
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	3 cut(s)	45, 146, 244
MaeI	CTAG	2 cut(s)	164, 305
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	130, 188
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	3 cut(s)	73, 86, 93
MluCI	AATT	6 cut(s)	95, 113, 179, 213, 247, 346
MlyI	GAGTC	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	3 cut(s)	314, 329, 335
NdeII	GATC	1 cut(s)	50
NheI	GCTAGC	1 cut(s)	304
NlaIII	CATG	1 cut(s)	293
NmuCI	GTSAC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	294
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	167
SetI	ASST	6 cut(s)	129, 150, 282, 306, 310, 331
SfaNI	GCATC	3 cut(s)	45, 146, 244
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	6 cut(s)	95, 113, 179, 213, 247, 346
SspMI	CTAG	2 cut(s)	164, 305
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	53, 283
TasI	AATT	6 cut(s)	95, 113, 179, 213, 247, 346
TfiI	GAWTC	1 cut(s)	274
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	3 cut(s)	95, 179, 213
XspI	CTAG	2 cut(s)	164, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.