Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026037.1

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Reverse (-)

16800 .. 20092

Gene Structure 3293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026037.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ctggaacaagagattttggatttttctgaaggcctaaggattgttggagtaaagcctgtagaaaacattgcactttttgctgataattcttgtcgttggcttgttgcagatcaggtgttgcacttgctgtggatagtcctgaattgttcaatcagattgcagaaccattctgttccaagtggagaccttgttactgcatctccagacgtttatcaagcaagtctaggggcagactcagaatttctagtgttagcatctgatggtgtatgggattacataaacagttcagatgcggtttcttttgtaaggaatcagcttcgacaacatggagatgtccagctagcttgttatgcgcttgctgaagctgctctggcaacaactaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

128

Amino Acids

13.99

Weight (kDa)

4.32

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	2 cut(s)	48, 381
AgsI	TTSAA	1 cut(s)	150
AluBI	AGCT	4 cut(s)	316, 340, 344, 365
AluI	AGCT	4 cut(s)	316, 340, 344, 365
Alw26I	GTCTC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	355
AsuNHI	GCTAGC	1 cut(s)	340
AxyI	CCTNAGG	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	3 cut(s)	224, 245, 341
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
BmsI	GCATC	3 cut(s)	206, 263, 280
BmtI	GCTAGC	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	177
BsaXI	ACNNNNNCTCC	4 cut(s)	174, 184, 204, 214
Bse21I	CCTNAGG	1 cut(s)	35
Bse3DI	GCAATG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	1 cut(s)	33
BsmAI	GTCTC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	33
Bso31I	GGTCTC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	248
BspOI	GCTAGC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	66
BssMI	GATC	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	284
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	342, 357
BstDEI	CTNAG	2 cut(s)	35, 235
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 350, 365, 371
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	352
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	342, 357
CfoI	GCGC	1 cut(s)	355
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	7 cut(s)	33, 55, 100, 316, 340, 344, 365
CviKI_1	RGCY	7 cut(s)	33, 55, 100, 316, 340, 344, 365
DdeI	CTNAG	2 cut(s)	35, 235
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eco147I	AGGCCT	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	177
Eco57I	CTGAAG	2 cut(s)	48, 381
Eco81I	CCTNAGG	1 cut(s)	35
FaeI	CATG	1 cut(s)	329
FaiI	YATR	4 cut(s)	268, 278, 327, 351
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	3 cut(s)	224, 245, 341
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	1 cut(s)	329
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HinfI	GANTC	2 cut(s)	233, 310
Hpy188I	TCNGA	5 cut(s)	28, 155, 238, 259, 289
Hpy188III	TCNNGA	2 cut(s)	139, 203
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	5 cut(s)	71, 107, 121, 160, 197
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 350, 365, 371
HpyF3I	CTNAG	2 cut(s)	35, 235
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	329
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	6 cut(s)	69, 98, 152, 216, 350, 356
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	3 cut(s)	206, 263, 280
MaeI	CTAG	3 cut(s)	224, 245, 341
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MluCI	AATT	4 cut(s)	85, 142, 239, 382
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	25
MslI	CAYNNNNRTG	1 cut(s)	330
MwoI	GCNNNNNNNGC	4 cut(s)	77, 350, 365, 371
NdeII	GATC	1 cut(s)	109
NheI	GCTAGC	1 cut(s)	340
NlaIII	CATG	1 cut(s)	329
PceI	AGGCCT	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	367
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
RseI	CAYNNNNRTG	1 cut(s)	330
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	227
SetI	ASST	7 cut(s)	117, 189, 210, 318, 342, 346, 367
SfaNI	GCATC	3 cut(s)	206, 263, 280
SfcI	CTRYAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	4 cut(s)	85, 142, 239, 382
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	3 cut(s)	224, 245, 341
StuI	AGGCCT	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	284
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	319
TasI	AATT	4 cut(s)	85, 142, 239, 382
TfiI	GAWTC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	239
XspI	CTAG	3 cut(s)	224, 245, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.