Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Forward (+)

37529999 .. 37530746

Gene Structure 748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG197200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGATAATCAAGTTATGCACAATACTGACGGTTTTGATAAATGGAAAGGATCGATGCTGAAGAAAGGAGTTGAAGAAGGAAGATGGAGGGAGAAATTTGTTTCTCGTGTTCAATTTAGTGGAGACCTTGTTACTGCATCTCCAGACGTTTATCAAGCAAGTCTAGGGGCAGACTCAGAATTTCTAGTGTTAGCATCTGATGGTTTATGGGATTACATAAATAGTTCAGATACAGTTTCTTTTGTAAGGAATCAGCTTCGACAACATGGAGATGTCCAGTATATATGGCCTACACATTTGTATTTGGAAAAGTACATTGATCCCAGAACAGTGCTTAACTACAAATACTTTCTGTTTCTGATTTCAGCTAGCTTGTTATGCGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

129

Amino Acids

14.88

Weight (kDa)

5.51

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	42 - 92	8.2e-13	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	58, 314
AcsI	RAATTY	2 cut(s)	95, 179
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	74, 113
AluBI	AGCT	3 cut(s)	256, 368, 372
AluI	AGCT	3 cut(s)	256, 368, 372
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	58, 314
AoxI	GGCC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	95, 179
AspLEI	GCGC	1 cut(s)	383
AsuNHI	GCTAGC	1 cut(s)	368
BauI	CACGAG	1 cut(s)	105
BccI	CCATC	2 cut(s)	78, 194
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	3 cut(s)	164, 185, 369
BmsI	GCATC	3 cut(s)	45, 146, 203
BmtI	GCTAGC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	126
Bsa29I	ATCGAT	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	117
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 124, 144, 154
Bse1I	ACTGG	1 cut(s)	277
BseCI	ATCGAT	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	289
BshVI	ATCGAT	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	50, 319
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	188
BspDI	ATCGAT	1 cut(s)	53
BspOI	GCTAGC	1 cut(s)	372
BspPI	GGATC	2 cut(s)	58, 314
BspTNI	GGTCTC	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	277
BssMI	GATC	2 cut(s)	50, 319
BssSI	CACGAG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	3 cut(s)	32, 235, 331
BstC8I	GCNNGC	2 cut(s)	370, 385
BstDEI	CTNAG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	2 cut(s)	53, 322
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	50, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	289
BsuTUI	ATCGAT	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	370, 385
CfoI	GCGC	1 cut(s)	383
ClaI	ATCGAT	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	4 cut(s)	256, 289, 368, 372
CviKI_1	RGCY	4 cut(s)	256, 289, 368, 372
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	2 cut(s)	52, 321
DpnII	GATC	2 cut(s)	50, 319
Eco31I	GGTCTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	80
FaeI	CATG	1 cut(s)	269
FaiI	YATR	8 cut(s)	17, 208, 218, 267, 282, 284, 286, 379
FatI	CATG	1 cut(s)	265
FspBI	CTAG	3 cut(s)	164, 185, 369
GlaI	GCGC	1 cut(s)	382
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	289
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	1 cut(s)	269
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HinfI	GANTC	2 cut(s)	173, 250
Hpy188I	TCNGA	4 cut(s)	178, 199, 229, 360
Hpy188III	TCNNGA	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	3 cut(s)	32, 235, 331
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	19, 137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	1 cut(s)	175
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	269
HspAI	GCGC	1 cut(s)	381
Kzo9I	GATC	2 cut(s)	50, 319
LpnPI	CCDG	3 cut(s)	156, 290, 337
LweI	GCATC	3 cut(s)	45, 146, 203
MaeI	CTAG	3 cut(s)	164, 185, 369
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	52, 321
MboI	GATC	2 cut(s)	50, 319
MboII	GAAGA	3 cut(s)	73, 86, 93
MluCI	AATT	3 cut(s)	95, 113, 179
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	1 cut(s)	81
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	378
NdeII	GATC	2 cut(s)	50, 319
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	336
Sau3AI	GATC	2 cut(s)	50, 319
SchI	GAGTC	1 cut(s)	167
SetI	ASST	5 cut(s)	129, 150, 258, 370, 374
SfaNI	GCATC	3 cut(s)	45, 146, 203
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	3 cut(s)	95, 113, 179
SspMI	CTAG	3 cut(s)	164, 185, 369
TaaI	ACNGT	3 cut(s)	32, 235, 331
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	53, 259
TasI	AATT	3 cut(s)	95, 113, 179
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	336
TspRI	CASTG	1 cut(s)	336
XapI	RAATTY	2 cut(s)	95, 179
XspI	CTAG	3 cut(s)	164, 185, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.