Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Reverse (-)

57581402 .. 57583288

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG340200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCTTAATTCTAATGATGCACGGAAATACCATACACATGAAGCTATCAATTCAAATGATATTGCTACACTAGTATATACAAGTGGAACAACAGGCAACCCGAAAGGTGTCATGCTCACTCATCGAAATTTATTACATCAGCCTTACCAACCTGGTCATACTGCCCCATCACCTCCCCCTCAGTCTGATGACACTACTGTTGACATCAGTGTTCAATTCAGTGGAGACCTTGTTACTGCATCTCCAGACGTTTATCAAGCAAGTCTAGGGGCAGACTCAGAATTTCTAGTGTTAGCATCTGATGGTGTATGGGATTACATAAACAGTTCAGATGCAGTTTCTTTTGTAAAGAATCAGCTTCGACAACATGGAGATGTCCAGCTAGCTTGTTATGCGCTTGCTGAAGCTGCTCTGGCAACAACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

142

Amino Acids

15.23

Weight (kDa)

4.71

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	10 - 50	5.1e-15	AMP-binding enzyme
PP2C	PF00481	76 - 140	7.9e-15	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	127, 281
AcuI	CTGAAG	1 cut(s)	423
AgsI	TTSAA	2 cut(s)	54, 215
AhlI	ACTAGT	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	5 cut(s)	44, 358, 382, 386, 407
AluI	AGCT	5 cut(s)	44, 358, 382, 386, 407
Alw26I	GTCTC	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	127, 281
AspLEI	GCGC	1 cut(s)	397
AsuHPI	GGTGA	1 cut(s)	162
AsuNHI	GCTAGC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	175, 296
BciT130I	CCWGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	219
BcuI	ACTAGT	1 cut(s)	70
BfaI	CTAG	4 cut(s)	71, 266, 287, 383
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	4 cut(s)	7, 248, 305, 322
BmtI	GCTAGC	1 cut(s)	386
BpmI	CTGGAG	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	219
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 226, 246, 256
BseBI	CCWGG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	194, 291
BseXI	GCAGC	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	219
Bso31I	GGTCTC	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	193, 290
BspOI	GCTAGC	1 cut(s)	386
BspTNI	GGTCTC	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	153
Bst4CI	ACNGT	2 cut(s)	199, 326
BstC8I	GCNNGC	2 cut(s)	384, 399
BstDEI	CTNAG	2 cut(s)	180, 277
BstHHI	GCGC	1 cut(s)	397
BstMAI	GTCTC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	392, 407, 413
BstNI	CCWGG	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	214, 226
Cac8I	GCNNGC	2 cut(s)	384, 399
CfoI	GCGC	1 cut(s)	397
CsiI	ACCWGGT	1 cut(s)	151
CviAII	CATG	3 cut(s)	38, 112, 368
CviJI	RGCY	6 cut(s)	44, 142, 358, 382, 386, 407
CviKI_1	RGCY	6 cut(s)	44, 142, 358, 382, 386, 407
DdeI	CTNAG	2 cut(s)	180, 277
Eco31I	GGTCTC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	151
FaeI	CATG	3 cut(s)	41, 115, 371
FatI	CATG	3 cut(s)	37, 111, 367
Fnu4HI	GCNGC	1 cut(s)	408
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	4 cut(s)	71, 266, 287, 383
GlaI	GCGC	1 cut(s)	396
GluI	GCNGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	397
Hin1II	CATG	3 cut(s)	41, 115, 371
Hin6I	GCGC	1 cut(s)	395
HinP1I	GCGC	1 cut(s)	395
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	275, 352
HphI	GGTGA	1 cut(s)	162
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	4 cut(s)	187, 280, 301, 331
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4III	ACNGT	2 cut(s)	199, 326
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	20, 239, 335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	392, 407, 413
HpyF3I	CTNAG	2 cut(s)	180, 277
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	41, 115, 371
HspAI	GCGC	1 cut(s)	395
LpnPI	CCDG	6 cut(s)	78, 138, 165, 258, 392, 398
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	4 cut(s)	7, 248, 305, 322
MabI	ACCWGGT	1 cut(s)	151
MaeI	CTAG	4 cut(s)	71, 266, 287, 383
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	232
MluCI	AATT	6 cut(s)	7, 49, 127, 215, 281, 424
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	2 cut(s)	183, 189
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	2 cut(s)	36, 372
MspR9I	CCNGG	1 cut(s)	153
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	3 cut(s)	392, 407, 413
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	3 cut(s)	41, 115, 371
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
RseI	CAYNNNNRTG	2 cut(s)	36, 372
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	1 cut(s)	408
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	153
SexAI	ACCWGGT	1 cut(s)	151
SfaNI	GCATC	4 cut(s)	7, 248, 305, 322
SmiMI	CAYNNNNRTG	2 cut(s)	36, 372
SpeI	ACTAGT	1 cut(s)	70
Sse9I	AATT	6 cut(s)	7, 49, 127, 215, 281, 424
SspMI	CTAG	4 cut(s)	71, 266, 287, 383
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	199, 326
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	124, 361
TasI	AATT	6 cut(s)	7, 49, 127, 215, 281, 424
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	2 cut(s)	214, 226
TseI	GCWGC	1 cut(s)	407
TspDTI	ATGAA	1 cut(s)	54
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	214, 226
XapI	RAATTY	2 cut(s)	127, 281
XspI	CTAG	4 cut(s)	71, 266, 287, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.