Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Reverse (-)

3791088 .. 3793203

Gene Structure 2116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42044

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCTGAAGAAAGGAGTTGAAGAAGGAAGATGGACGGAGAAATTTGTTTCTCGTGTTCAATTCAGTGGAAACCTTGTTACTGCATCTCCAGACGTTTATCAAGCAAGTCTAGGGGCAGACTCAGAATTTCTAGTGTTAGCATCTGATGGTTTATGGGATTACATAAACAGTTCAGATGCAGTTTCTTTTGTAACGAATCAGCTTCGACAACATGGAGATGTCCAGGTATATATGGCCTACACATTTGTATTTGGAAAAGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

88

Amino Acids

9.84

Weight (kDa)

5.1

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	24 - 73	3.6e-13	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	41, 125
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	20, 59
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
AoxI	GGCC	1 cut(s)	234
ApoI	RAATTY	2 cut(s)	41, 125
BauI	CACGAG	1 cut(s)	51
BccI	CCATC	2 cut(s)	24, 140
BciT130I	CCWGG	1 cut(s)	224
BfaI	CTAG	2 cut(s)	110, 131
Bme1390I	CCNGG	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	3 cut(s)	92, 149, 166
BpmI	CTGGAG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
BseBI	CCWGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	236
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	134
BssSI	CACGAG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	170
BstDEI	CTNAG	1 cut(s)	121
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	2 cut(s)	202, 236
CviKI_1	RGCY	2 cut(s)	202, 236
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	215
FaiI	YATR	6 cut(s)	154, 164, 213, 229, 231, 233
FatI	CATG	1 cut(s)	211
FspBI	CTAG	2 cut(s)	110, 131
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	236
Hin1II	CATG	1 cut(s)	215
HinfI	GANTC	2 cut(s)	119, 196
Hpy188I	TCNGA	3 cut(s)	124, 145, 175
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	2 cut(s)	83, 179
HpyF3I	CTNAG	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	215
LpnPI	CCDG	3 cut(s)	102, 209, 236
LweI	GCATC	3 cut(s)	92, 149, 166
MaeI	CTAG	2 cut(s)	110, 131
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	76, 190
MboII	GAAGA	3 cut(s)	19, 32, 39
MluCI	AATT	3 cut(s)	41, 59, 125
MlyI	GAGTC	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
NlaIII	CATG	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	1 cut(s)	216
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	4 cut(s)	75, 96, 204, 228
SfaNI	GCATC	3 cut(s)	92, 149, 166
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	41, 59, 125
SspMI	CTAG	2 cut(s)	110, 131
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	205
TasI	AATT	3 cut(s)	41, 59, 125
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	196
TscAI	CASTG	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	70
XapI	RAATTY	2 cut(s)	41, 125
XspI	CTAG	2 cut(s)	110, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.