Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003181.1

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Forward (+)

42953 .. 43714

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003181.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgcacaatattgacggttttgataaatggaaaggatcgatgctgaagaaaggagttgaagaaggaagatggacggagaaatttgtttctcgtggagaccttgttactgcatctccagacgtttatcaagcaagtctaggggcagactcagaatttctagtgttagcatctgatggtttatgggattacataaacagttcagatgcagtttcttttgtaaggaatcagcttcgacaacatggagatgtccagctagcttgttatgcgcttgctgaagctgctctggcaacaactaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

99

Amino Acids

10.88

Weight (kDa)

4.77

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	80, 152
AcuI	CTGAAG	2 cut(s)	65, 294
AgsI	TTSAA	1 cut(s)	59
AluBI	AGCT	4 cut(s)	229, 253, 257, 278
AluI	AGCT	4 cut(s)	229, 253, 257, 278
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	80, 152
AspLEI	GCGC	1 cut(s)	268
AsuNHI	GCTAGC	1 cut(s)	253
BauI	CACGAG	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	2 cut(s)	63, 167
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	3 cut(s)	137, 158, 254
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmsI	GCATC	4 cut(s)	30, 119, 176, 193
BmtI	GCTAGC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	99
Bsa29I	ATCGAT	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	90
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 97, 117, 127
BseCI	ATCGAT	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	162
BseXI	GCAGC	1 cut(s)	265
BshVI	ATCGAT	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	161
BspDI	ATCGAT	1 cut(s)	38
BspOI	GCTAGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	90
BssMI	GATC	1 cut(s)	35
BssSI	CACGAG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	17, 197
BstC8I	GCNNGC	2 cut(s)	255, 270
BstDEI	CTNAG	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	1 cut(s)	38
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	35
BstMWI	GCNNNNNNNGC	3 cut(s)	263, 278, 284
BstV1I	GCAGC	1 cut(s)	265
Bsu15I	ATCGAT	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	255, 270
CfoI	GCGC	1 cut(s)	268
ClaI	ATCGAT	1 cut(s)	38
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	4 cut(s)	229, 253, 257, 278
CviKI_1	RGCY	4 cut(s)	229, 253, 257, 278
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	65, 294
FaeI	CATG	1 cut(s)	242
FaiI	YATR	4 cut(s)	181, 191, 240, 264
FatI	CATG	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
FspBI	CTAG	3 cut(s)	137, 158, 254
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	99
HhaI	GCGC	1 cut(s)	268
Hin1II	CATG	1 cut(s)	242
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HinfI	GANTC	2 cut(s)	146, 223
Hpy188I	TCNGA	3 cut(s)	151, 172, 202
Hpy188III	TCNNGA	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	2 cut(s)	17, 197
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	4, 110, 206
HpyF10VI	GCNNNNNNNGC	3 cut(s)	263, 278, 284
HpyF3I	CTNAG	1 cut(s)	148
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	242
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	35
LpnPI	CCDG	3 cut(s)	129, 263, 269
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	4 cut(s)	30, 119, 176, 193
MaeI	CTAG	3 cut(s)	137, 158, 254
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MboII	GAAGA	3 cut(s)	58, 71, 78
MluCI	AATT	3 cut(s)	80, 152, 295
MlyI	GAGTC	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	263, 278, 284
NdeII	GATC	1 cut(s)	35
NheI	GCTAGC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	243
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	140
SetI	ASST	6 cut(s)	102, 123, 231, 255, 259, 280
SfaNI	GCATC	4 cut(s)	30, 119, 176, 193
SmiMI	CAYNNNNRTG	1 cut(s)	243
Sse9I	AATT	3 cut(s)	80, 152, 295
SspI	AATATT	1 cut(s)	10
SspMI	CTAG	3 cut(s)	137, 158, 254
TaaI	ACNGT	2 cut(s)	17, 197
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	38, 232
TasI	AATT	3 cut(s)	80, 152, 295
TfiI	GAWTC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	89
XapI	RAATTY	2 cut(s)	80, 152
XspI	CTAG	3 cut(s)	137, 158, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.