Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Forward (+)

65171860 .. 65175012

Gene Structure 3153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG442100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTCTGTTAAGTCCACAACTGCAGAGGTTCCTCTTAACCAAGTACAACTGCAGCGGTGGAGGTGGAGGTGGAGGTGGCGCATTCAAGACCACAACCACAACGAACACCAACAAAAACAGTGGCTTTTGTAACAAGTCAACTGCCCCACTCTGTTCGGCGATTGCTATAGACGGGCCGGGATCGTCCTCTGCCGCTGTCGCCGGAGTTCGGTGGGGATCTACGAGCTTGCAGGGAGCGCGTGAAGAGATGGAAGACGGCGTTGTTGTCCGGTCCGATGGCCTTGATGCTTATTCATTCGCGGCGGTTTTTGATGGACATGCTGGCTTCTCCTCAGTCAAGTTCCTCAGAGATGAGCTCTACAAAGAGTGTTGTGCGGCTTTACAAGGTGGTTTGCTATTGAGTGGGAAAGATATCAAAGCCATTAGAGAGGCGTTACAGGAGGCTTTTGAAAAAGTTGATGCAAAATTGTTGGATTGGCTTGAAAGGAATGGGGAGGAAGATGGGTCTGGTTCAACAGCTACTGTTATGTTCGTTGGGAACGATATGCTGTTCATTTCACATGTTGGCGATTCATCTGTGGTTCAATCTTGTTCTGGAAAAGCAGAGGTGTTGACCAGTCCTCATCGACCATATGGAAGCAACAAGGTCTGTCTTCAAGAAATTAAAAGAATCAGAGAAGCAGGTGGATGGATCGTCAATGGAAGAATTTGTGGAGACATTGCTGTATCTCGTGCTTTTGGTGACATGCGGTTCAAGACAAAGAAAAACGAGATGCTGAAGAAAGGAGTTGAAGAAGGAAGATGGACGGAGAAATTTGTTTCTCGTGTGCAATTCAGTGGAGACCTTGTTACTGCATCTCCAGACGTTTATCAAGCAAATCTTGGGGCAGACTCGGAATTTCTAGTGCTAGCATCTGATGGCTTATGGGATTACATAAACAGTTCAGATGCGGTTTCTTTTGTAAGGAATCAGCTTCGACAACATGGAGATGTCCAGCTAGCTTGTGACGCGCTTGCTGAAGCTGCTCTGGTAACAACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

348

Amino Acids

37.13

Weight (kDa)

5.41

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	73 - 344	6.1e-50	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	674
Acc36I	ACCTGC	1 cut(s)	674
AccII	CGCG	3 cut(s)	241, 302, 1013
AciI	CCGC	7 cut(s)	57, 195, 302, 305, 377, 751, 953
AclWI	GGATC	3 cut(s)	190, 226, 701
AcsI	RAATTY	3 cut(s)	708, 815, 899
AcuI	CTGAAG	2 cut(s)	800, 1041
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflIII	ACRYGT	1 cut(s)	562
AgsI	TTSAA	8 cut(s)	88, 452, 485, 516, 587, 659, 757, 794
AluBI	AGCT	7 cut(s)	228, 358, 521, 976, 1000, 1004, 1025
AluI	AGCT	7 cut(s)	228, 358, 521, 976, 1000, 1004, 1025
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	2 cut(s)	711, 837
AlwI	GGATC	3 cut(s)	190, 226, 701
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	2 cut(s)	176, 280
ApeKI	GCWGC	2 cut(s)	54, 1025
ApoI	RAATTY	3 cut(s)	708, 815, 899
AspLEI	GCGC	3 cut(s)	83, 241, 1015
AspS9I	GGNCC	2 cut(s)	176, 273
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	755
AsuNHI	GCTAGC	2 cut(s)	910, 1000
AvaII	GGWCC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	360
BauI	CACGAG	2 cut(s)	732, 825
BbsI	GAAGAC	2 cut(s)	261, 647
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	66, 1012
BccI	CCATC	7 cut(s)	244, 272, 308, 497, 684, 798, 914
BceAI	ACGGC	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	711, 837
BfaI	CTAG	3 cut(s)	905, 911, 1001
BfmI	CTRYAG	3 cut(s)	23, 52, 168
BfuAI	ACCTGC	1 cut(s)	674
BisI	GCNGC	5 cut(s)	55, 195, 303, 378, 1026
BlsI	GCNGC	5 cut(s)	56, 196, 304, 379, 1027
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	176, 273
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	6 cut(s)	277, 451, 765, 866, 923, 940
BmtI	GCTAGC	2 cut(s)	914, 1004
BpiI	GAAGAC	2 cut(s)	261, 647
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
BpmI	CTGGAG	1 cut(s)	846
BpuMI	CCSGG	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	837
BsaWI	WCCGGW	1 cut(s)	270
BsaXI	ACNNNNNCTCC	4 cut(s)	834, 844, 864, 874
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	618
Bse3DI	GCAATG	1 cut(s)	720
BseGI	GGATG	1 cut(s)	695
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	2 cut(s)	348, 361
BseNI	ACTGG	1 cut(s)	618
BseRI	GAGGAG	1 cut(s)	322
BseXI	GCAGC	2 cut(s)	66, 1012
Bsh1236I	CGCG	3 cut(s)	241, 302, 1013
BshFI	GGCC	2 cut(s)	178, 282
BsiHKAI	GWGCWC	1 cut(s)	360
BsiSI	CCGG	3 cut(s)	179, 204, 271
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	2 cut(s)	711, 837
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	178, 282
Bso31I	GGTCTC	1 cut(s)	837
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	3 cut(s)	182, 218, 693
BspACI	CCGC	7 cut(s)	57, 195, 302, 305, 377, 751, 953
BspANI	GGCC	2 cut(s)	178, 282
BspCNI	CTCAG	2 cut(s)	347, 360
BspFNI	CGCG	3 cut(s)	241, 302, 1013
BspLI	GGNNCC	1 cut(s)	32
BspMAI	CTGCAG	2 cut(s)	27, 56
BspMI	ACCTGC	1 cut(s)	674
BspOI	GCTAGC	2 cut(s)	914, 1004
BspPI	GGATC	3 cut(s)	190, 226, 701
BspTNI	GGTCTC	1 cut(s)	837
BsrDI	GCAATG	1 cut(s)	720
BsrI	ACTGG	1 cut(s)	618
BssMI	GATC	3 cut(s)	182, 218, 693
BssSI	CACGAG	2 cut(s)	732, 825
Bst2BI	CACGAG	2 cut(s)	732, 825
Bst4CI	ACNGT	3 cut(s)	122, 526, 944
Bst6I	CTCTTC	1 cut(s)	240
BstC8I	GCNNGC	5 cut(s)	230, 325, 912, 1002, 1017
BstDEI	CTNAG	2 cut(s)	334, 347
BstF5I	GGATG	1 cut(s)	695
BstFNI	CGCG	3 cut(s)	241, 302, 1013
BstHHI	GCGC	3 cut(s)	83, 241, 1015
BstKTI	GATC	3 cut(s)	185, 221, 696
BstMAI	GTCTC	2 cut(s)	711, 837
BstMBI	GATC	3 cut(s)	182, 218, 693
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 238, 1010, 1025
BstNSI	RCATGY	3 cut(s)	323, 566, 751
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	3 cut(s)	23, 52, 168
BstUI	CGCG	3 cut(s)	241, 302, 1013
BstV1I	GCAGC	2 cut(s)	66, 1012
BstV2I	GAAGAC	2 cut(s)	261, 647
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	178, 282
BtsCI	GGATG	1 cut(s)	695
BtsIMutI	CAGTG	2 cut(s)	127, 844
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	5 cut(s)	230, 325, 912, 1002, 1017
CaiI	CAGNNNCTG	1 cut(s)	524
CfoI	GCGC	3 cut(s)	83, 241, 1015
Cfr13I	GGNCC	2 cut(s)	176, 273
CpoI	CGGWCCG	1 cut(s)	273
CseI	GACGC	1 cut(s)	1019
Csp6I	GTAC	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	103, 138
CspI	CGGWCCG	1 cut(s)	273
CviAII	CATG	4 cut(s)	320, 563, 748, 986
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	334, 347
DpnI	GATC	3 cut(s)	184, 220, 695
DpnII	GATC	3 cut(s)	182, 218, 693
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	837
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	273
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	800, 1041
EcoICRI	GAGCTC	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	360
FaeI	CATG	4 cut(s)	323, 566, 751, 989
FalI	AAGNNNNNCTT	2 cut(s)	867, 899
FatI	CATG	4 cut(s)	319, 562, 747, 985
FauNDI	CATATG	1 cut(s)	634
Fnu4HI	GCNGC	5 cut(s)	55, 195, 303, 378, 1026
FokI	GGATG	1 cut(s)	702
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	5 cut(s)	55, 195, 303, 378, 1026
FspBI	CTAG	3 cut(s)	905, 911, 1001
GlaI	GCGC	3 cut(s)	82, 240, 1014
GluI	GCNGC	5 cut(s)	55, 195, 303, 378, 1026
GsuI	CTGGAG	1 cut(s)	846
HaeIII	GGCC	2 cut(s)	178, 282
HapII	CCGG	3 cut(s)	179, 204, 271
HgaI	GACGC	1 cut(s)	1019
HhaI	GCGC	3 cut(s)	83, 241, 1015
Hin1II	CATG	4 cut(s)	323, 566, 751, 989
Hin6I	GCGC	3 cut(s)	81, 239, 1013
HinP1I	GCGC	3 cut(s)	81, 239, 1013
HincII	GTYRAC	2 cut(s)	141, 615
HindII	GTYRAC	2 cut(s)	141, 615
HinfI	GANTC	4 cut(s)	572, 672, 893, 970
HpaII	CCGG	3 cut(s)	179, 204, 271
HphI	GGTGA	1 cut(s)	755
Hpy166II	GTNNAC	3 cut(s)	17, 141, 615
Hpy188I	TCNGA	6 cut(s)	277, 350, 677, 898, 919, 949
Hpy188III	TCNNGA	5 cut(s)	88, 597, 659, 757, 863
Hpy8I	GTNNAC	3 cut(s)	17, 141, 615
HpyAV	CCTTC	1 cut(s)	791
HpyCH4III	ACNGT	3 cut(s)	122, 526, 944
HpyCH4IV	ACGT	1 cut(s)	867
HpyCH4V	TGCA	6 cut(s)	25, 54, 232, 464, 832, 857
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 238, 1010, 1025
HpyF3I	CTNAG	2 cut(s)	334, 347
HpySE526I	ACGT	1 cut(s)	867
Hsp92II	CATG	4 cut(s)	323, 566, 751, 989
HspAI	GCGC	3 cut(s)	81, 239, 1013
Kzo9I	GATC	3 cut(s)	182, 218, 693
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	2 cut(s)	66, 1012
LweI	GCATC	6 cut(s)	277, 451, 765, 866, 923, 940
MaeI	CTAG	3 cut(s)	905, 911, 1001
MaeII	ACGT	1 cut(s)	867
MaeIII	GTNAC	6 cut(s)	131, 435, 743, 850, 1007, 1033
MalI	GATC	3 cut(s)	184, 220, 695
MboI	GATC	3 cut(s)	182, 218, 693
MboII	GAAGA	8 cut(s)	257, 266, 512, 647, 717, 793, 806, 813
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	7 cut(s)	467, 663, 708, 815, 833, 899, 1042
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	1 cut(s)	453
MseI	TTAA	4 cut(s)	11, 38, 666, 1045
MslI	CAYNNNNRTG	1 cut(s)	990
MspA1I	CMGCKG	2 cut(s)	57, 197
MspI	CCGG	3 cut(s)	179, 204, 271
MspR9I	CCNGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	83
MvnI	CGCG	3 cut(s)	241, 302, 1013
MwoI	GCNNNNNNNGC	4 cut(s)	200, 238, 1010, 1025
NciI	CCSGG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	634
NdeII	GATC	3 cut(s)	182, 218, 693
NheI	GCTAGC	2 cut(s)	910, 1000
NlaIII	CATG	4 cut(s)	323, 566, 751, 989
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	2 cut(s)	743, 1007
NspI	RCATGY	3 cut(s)	323, 566, 751
PaqCI	CACCTGC	1 cut(s)	674
PciI	ACATGT	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PctI	GAATGC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	572, 672, 970
PkrI	GCNGC	5 cut(s)	56, 196, 304, 379, 1027
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
PscI	ACATGT	1 cut(s)	562
Psp124BI	GAGCTC	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	176, 273
PstI	CTGCAG	2 cut(s)	27, 56
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	990
Rsr2I	CGGWCCG	1 cut(s)	273
RsrII	CGGWCCG	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	360
SaqAI	TTAA	4 cut(s)	11, 38, 666, 1045
SatI	GCNGC	5 cut(s)	55, 195, 303, 378, 1026
Sau3AI	GATC	3 cut(s)	182, 218, 693
Sau96I	GGNCC	2 cut(s)	176, 273
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	6 cut(s)	277, 451, 765, 866, 923, 940
SfcI	CTRYAG	3 cut(s)	23, 52, 168
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	990
Sse9I	AATT	7 cut(s)	467, 663, 708, 815, 833, 899, 1042
SsiI	CCGC	7 cut(s)	57, 195, 302, 305, 377, 751, 953
SspMI	CTAG	3 cut(s)	905, 911, 1001
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	178
TaaI	ACNGT	3 cut(s)	122, 526, 944
TaiI	ACGT	1 cut(s)	870
TaqI	TCGA	2 cut(s)	628, 979
TasI	AATT	7 cut(s)	467, 663, 708, 815, 833, 899, 1042
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	3 cut(s)	197, 305, 380
TfiI	GAWTC	3 cut(s)	572, 672, 970
Tru1I	TTAA	4 cut(s)	11, 38, 666, 1045
Tru9I	TTAA	4 cut(s)	11, 38, 666, 1045
TscAI	CASTG	2 cut(s)	127, 844
TseFI	GTSAC	2 cut(s)	743, 1007
TseI	GCWGC	2 cut(s)	54, 1025
Tsp45I	GTSAC	2 cut(s)	743, 1007
TspDTI	ATGAA	3 cut(s)	285, 544, 564
TspGWI	ACGGA	1 cut(s)	824
TspRI	CASTG	2 cut(s)	127, 844
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	3 cut(s)	708, 815, 899
XceI	RCATGY	3 cut(s)	323, 566, 751
XspI	CTAG	3 cut(s)	905, 911, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.