Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Reverse (-)

6466937 .. 6470719

Gene Structure 3783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGGAGGATCGGTCTTGGGGATGCCGAAAAGGTGTTTTCCGCCGGTCGGTCGGCAGAGGCCGGGGAGCCTTCGATCCAACGTCCGGGGCAGCGGCGGTGCAAAGGAGGACCACGGGGAGCATGGGCGGCGCACGGCGAATCGAGGGAGGGCGGGTCCGGGCGGAGGTGGCGGAAAGTGGCCAACGAACCGGGTAATTATTTACATGGTGTCAATGATGTGGTATCAGCTCCTAGACTGAGTTGCCCTCCTATTAGGAGAATAACAGCTACAAGAGATAAGGAGGATAATGCATTGGAATATGGATTGCCATCTTTTCACACTATATACACAGTTTGCTTGTCTAGTTCAGATGCAGTTTCTTTTGTAAGGAATCAGCTTCAACAACATGGAGATGTCCAGCTAGCTTGTTATGCGCTTGCTGAAGCTGCTCTGGCAACAACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030148 GO:0031984 GO:0033993 GO:0042175 GO:0042221 GO:0042392 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0050896 GO:0071704 GO:0090332 GO:0097305 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00600 ko04071 map00600 map04071

Pfam Domains

Protein Families

PAP2

Protein Analysis

149

Amino Acids

16.01

Weight (kDa)

9.07

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	42, 94, 97, 128, 153, 163, 172
AclWI	GGATC	2 cut(s)	17, 70
AcoI	YGGCCR	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	444
AfiI	CCNNNNNNNGG	3 cut(s)	48, 85, 165
AgsI	TTSAA	1 cut(s)	383
AluBI	AGCT	6 cut(s)	230, 269, 379, 403, 407, 428
AluI	AGCT	6 cut(s)	230, 269, 379, 403, 407, 428
AlwI	GGATC	2 cut(s)	17, 70
AoxI	GGCC	2 cut(s)	60, 180
ApeKI	GCWGC	2 cut(s)	91, 428
AspLEI	GCGC	2 cut(s)	133, 418
AspS9I	GGNCC	2 cut(s)	110, 156
AsuC2I	CCSGG	4 cut(s)	64, 87, 160, 192
AsuNHI	GCTAGC	1 cut(s)	403
AvaII	GGWCC	2 cut(s)	110, 156
BalI	TGGCCA	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	103, 415
BccI	CCATC	1 cut(s)	319
BceAI	ACGGC	1 cut(s)	151
BcnI	CCSGG	4 cut(s)	64, 87, 160, 192
BfaI	CTAG	3 cut(s)	234, 345, 404
BisI	GCNGC	4 cut(s)	92, 95, 129, 429
BlsI	GCNGC	4 cut(s)	93, 96, 130, 430
Bme1390I	CCNGG	4 cut(s)	64, 87, 160, 192
Bme18I	GGWCC	2 cut(s)	110, 156
BmgT120I	GGNCC	2 cut(s)	110, 156
BmiI	GGNNCC	2 cut(s)	69, 157
BmrFI	CCNGG	4 cut(s)	64, 87, 160, 192
BmsI	GCATC	2 cut(s)	13, 343
BmtI	GCTAGC	1 cut(s)	407
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
BpuMI	CCSGG	4 cut(s)	64, 87, 160, 192
BsaBI	GATNNNNATC	1 cut(s)	310
BsaJI	CCNNGG	3 cut(s)	63, 86, 113
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 140, 170
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 85, 165
Bse118I	RCCGGY	1 cut(s)	44
Bse8I	GATNNNNATC	1 cut(s)	310
BseDI	CCNNGG	3 cut(s)	63, 86, 113
BseGI	GGATG	1 cut(s)	28
BseJI	GATNNNNATC	1 cut(s)	310
BseLI	CCNNNNNNNGG	3 cut(s)	48, 85, 165
BseMII	CTCAG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	103, 415
Bsh1285I	CGRYCG	2 cut(s)	49, 53
BshFI	GGCC	2 cut(s)	62, 182
BsiEI	CGRYCG	2 cut(s)	49, 53
BsiSI	CCGG	5 cut(s)	45, 63, 86, 159, 191
BslI	CCNNNNNNNGG	3 cut(s)	48, 85, 165
BsnI	GGCC	2 cut(s)	62, 182
Bsp143I	GATC	2 cut(s)	9, 75
BspACI	CCGC	7 cut(s)	42, 94, 97, 128, 153, 163, 172
BspANI	GGCC	2 cut(s)	62, 182
BspCNI	CTCAG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	69, 157
BspOI	GCTAGC	1 cut(s)	407
BspPI	GGATC	2 cut(s)	17, 70
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	63, 86, 113
BssMI	GATC	2 cut(s)	9, 75
Bst4CI	ACNGT	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	405, 420
BstDEI	CTNAG	1 cut(s)	239
BstDSI	CCRYGG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	133, 418
BstKTI	GATC	2 cut(s)	12, 78
BstMBI	GATC	2 cut(s)	9, 75
BstMCI	CGRYCG	2 cut(s)	49, 53
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 169, 413, 428, 434
BstSCI	CCNGG	4 cut(s)	62, 85, 158, 190
BstV1I	GCAGC	2 cut(s)	103, 415
BsuRI	GGCC	2 cut(s)	62, 182
BtgI	CCRYGG	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	28
Cac8I	GCNNGC	2 cut(s)	405, 420
CfoI	GCGC	2 cut(s)	133, 418
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	110, 156
CviAII	CATG	3 cut(s)	123, 206, 389
CviJI	RGCY	9 cut(s)	62, 70, 182, 230, 269, 379, 403, 407, 428
CviKI_1	RGCY	9 cut(s)	62, 70, 182, 230, 269, 379, 403, 407, 428
DdeI	CTNAG	1 cut(s)	239
DpnI	GATC	2 cut(s)	11, 77
DpnII	GATC	2 cut(s)	9, 75
EaeI	YGGCCR	1 cut(s)	180
EciI	GGCGGA	3 cut(s)	31, 178, 187
Eco47I	GGWCC	2 cut(s)	110, 156
Eco57I	CTGAAG	1 cut(s)	444
EcoT22I	ATGCAT	1 cut(s)	295
FaeI	CATG	3 cut(s)	126, 209, 392
FaiI	YATR	7 cut(s)	124, 207, 303, 326, 328, 390, 414
FatI	CATG	3 cut(s)	122, 205, 388
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	4 cut(s)	92, 95, 129, 429
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	4 cut(s)	92, 95, 129, 429
FspBI	CTAG	3 cut(s)	234, 345, 404
GlaI	GCGC	2 cut(s)	132, 417
GluI	GCNGC	4 cut(s)	92, 95, 129, 429
HaeIII	GGCC	2 cut(s)	62, 182
HapII	CCGG	5 cut(s)	45, 63, 86, 159, 191
HhaI	GCGC	2 cut(s)	133, 418
Hin1II	CATG	3 cut(s)	126, 209, 392
Hin6I	GCGC	2 cut(s)	131, 416
HinP1I	GCGC	2 cut(s)	131, 416
HinfI	GANTC	2 cut(s)	140, 373
HpaII	CCGG	5 cut(s)	45, 63, 86, 159, 191
Hpy188I	TCNGA	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	81
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	3 cut(s)	102, 293, 356
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 169, 413, 428, 434
HpyF3I	CTNAG	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	3 cut(s)	126, 209, 392
HspAI	GCGC	2 cut(s)	131, 416
Kzo9I	GATC	2 cut(s)	9, 75
LmnI	GCTCC	3 cut(s)	67, 119, 235
LpnPI	CCDG	7 cut(s)	58, 76, 99, 172, 204, 413, 419
Lsp1109I	GCAGC	2 cut(s)	103, 415
LweI	GCATC	2 cut(s)	13, 343
MaeI	CTAG	3 cut(s)	234, 345, 404
MaeII	ACGT	1 cut(s)	82
MalI	GATC	2 cut(s)	11, 77
MboI	GATC	2 cut(s)	9, 75
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	2 cut(s)	196, 445
MluNI	TGGCCA	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	7 cut(s)	52, 101, 138, 142, 159, 258, 277
Mox20I	TGGCCA	1 cut(s)	182
Mph1103I	ATGCAT	1 cut(s)	295
MscI	TGGCCA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	182
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	5 cut(s)	45, 63, 86, 159, 191
MspR9I	CCNGG	4 cut(s)	64, 87, 160, 192
MwoI	GCNNNNNNNGC	5 cut(s)	128, 169, 413, 428, 434
NciI	CCSGG	4 cut(s)	64, 87, 160, 192
NdeII	GATC	2 cut(s)	9, 75
NheI	GCTAGC	1 cut(s)	403
NlaIII	CATG	3 cut(s)	126, 209, 392
NlaIV	GGNNCC	2 cut(s)	69, 157
NsiI	ATGCAT	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	140, 373
PkrI	GCNGC	4 cut(s)	93, 96, 130, 430
PspN4I	GGNNCC	2 cut(s)	69, 157
PspPI	GGNCC	2 cut(s)	110, 156
RseI	CAYNNNNRTG	1 cut(s)	393
SatI	GCNGC	4 cut(s)	92, 95, 129, 429
Sau3AI	GATC	2 cut(s)	9, 75
Sau96I	GGNCC	2 cut(s)	110, 156
ScrFI	CCNGG	4 cut(s)	64, 87, 160, 192
SetI	ASST	9 cut(s)	36, 85, 170, 232, 271, 381, 405, 409, 430
SfaNI	GCATC	2 cut(s)	13, 343
SinI	GGWCC	2 cut(s)	110, 156
SmiMI	CAYNNNNRTG	1 cut(s)	393
Sse9I	AATT	2 cut(s)	196, 445
SsiI	CCGC	7 cut(s)	42, 94, 97, 128, 153, 163, 172
SspMI	CTAG	3 cut(s)	234, 345, 404
StyD4I	CCNGG	4 cut(s)	62, 85, 158, 190
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	2 cut(s)	74, 143
TaqII	GACCGA	1 cut(s)	39
TasI	AATT	2 cut(s)	196, 445
TauI	GCSGC	2 cut(s)	97, 131
TfiI	GAWTC	2 cut(s)	140, 373
TseI	GCWGC	2 cut(s)	91, 428
VpaK11BI	GGWCC	2 cut(s)	110, 156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	120
XspI	CTAG	3 cut(s)	234, 345, 404
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.