Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Reverse (-)

29941292 .. 29942068

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG157900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGATAATCAAGTTATGCACAATATTGACGGTTTTGATAAATGGAAAGGATCGATGCTGAAGAAAGGAGTTGAAGAAGGAAGATGGACGGAGAAATTTGTTTCTCGTGTTCAATTCAGTGGAGACCTTGTTACTGCATATCCAGACATTTATCAAGCAAGTCTAGGGGCAGACTCAGAATTTCTAGTGTTAGCATCTGATGGTTTATGGGATTACATAAACAGTTCAGATGCAGTTTCTTTTGTAAGGAATCAGCTTCGACAACATGGAGATGTTCAGCTAGCTTGTTATGCGCTTGCTGAAGCTGCTCTGGCAACAACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

108

Amino Acids

12.02

Weight (kDa)

4.64

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	42 - 106	1.7e-15	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	58
AcsI	RAATTY	2 cut(s)	95, 179
AcuI	CTGAAG	2 cut(s)	80, 321
AgsI	TTSAA	2 cut(s)	74, 113
AluBI	AGCT	4 cut(s)	256, 280, 284, 305
AluI	AGCT	4 cut(s)	256, 280, 284, 305
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	58
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	2 cut(s)	95, 179
AspLEI	GCGC	1 cut(s)	295
AsuNHI	GCTAGC	1 cut(s)	280
BauI	CACGAG	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	2 cut(s)	78, 194
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	3 cut(s)	164, 185, 281
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
BmsI	GCATC	3 cut(s)	45, 203, 220
BmtI	GCTAGC	1 cut(s)	284
Bsa29I	ATCGAT	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
BseCI	ATCGAT	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	292
BshVI	ATCGAT	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	117
Bso31I	GGTCTC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	188
BspDI	ATCGAT	1 cut(s)	53
BspOI	GCTAGC	1 cut(s)	284
BspPI	GGATC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	117
BssMI	GATC	1 cut(s)	50
BssSI	CACGAG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	32, 224
BstC8I	GCNNGC	2 cut(s)	282, 297
BstDEI	CTNAG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	1 cut(s)	53
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	50
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 305, 311
BstV1I	GCAGC	1 cut(s)	292
Bsu15I	ATCGAT	1 cut(s)	53
BsuTUI	ATCGAT	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	282, 297
CfoI	GCGC	1 cut(s)	295
ClaI	ATCGAT	1 cut(s)	53
CviAII	CATG	1 cut(s)	266
CviJI	RGCY	4 cut(s)	256, 280, 284, 305
CviKI_1	RGCY	4 cut(s)	256, 280, 284, 305
DdeI	CTNAG	1 cut(s)	175
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	80, 321
FaeI	CATG	1 cut(s)	269
FaiI	YATR	6 cut(s)	17, 139, 208, 218, 267, 291
FatI	CATG	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	306
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	3 cut(s)	164, 185, 281
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	269
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	2 cut(s)	173, 250
Hpy188I	TCNGA	3 cut(s)	178, 199, 229
Hpy188III	TCNNGA	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	2 cut(s)	32, 224
HpyCH4V	TGCA	3 cut(s)	19, 137, 233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 305, 311
HpyF3I	CTNAG	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	269
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	2 cut(s)	156, 296
Lsp1109I	GCAGC	1 cut(s)	292
LweI	GCATC	3 cut(s)	45, 203, 220
MaeI	CTAG	3 cut(s)	164, 185, 281
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MboII	GAAGA	3 cut(s)	73, 86, 93
MluCI	AATT	4 cut(s)	95, 113, 179, 322
MlyI	GAGTC	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	290, 305, 311
NdeII	GATC	1 cut(s)	50
NheI	GCTAGC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	270
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	167
SetI	ASST	5 cut(s)	129, 258, 282, 286, 307
SfaNI	GCATC	3 cut(s)	45, 203, 220
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	4 cut(s)	95, 113, 179, 322
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	3 cut(s)	164, 185, 281
TaaI	ACNGT	2 cut(s)	32, 224
TaqI	TCGA	2 cut(s)	53, 259
TasI	AATT	4 cut(s)	95, 113, 179, 322
TfiI	GAWTC	1 cut(s)	250
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	305
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	2 cut(s)	95, 179
XspI	CTAG	3 cut(s)	164, 185, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.