MD01G1223200.v1.1

Protein phosphatase 2C 57-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
31505550 .. 31508753
3204 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1223200.v1.1.491

Sequence Viewer

Length: 1167 bp
ATGGCTTTGATAAGCCCACAGCTGCAGAGGTTCCTCCTAACCAAACAGCACGGCGGCTCATTCAAGAGCGCCGCCGAAAAAAGCAGCTTTAACATAAAAGCTAGAAGCAGAAGCTGCTCCGCCATTGCAATAGATGCGCCGGGTTCCGCCCTGACCGACGTGGGGGGAATCCGATGGGGTTCGACGAGTCTGCAGGGTGCCCGGGAGGAGATGGAAGACGCTGTCGTTGTCCGGTCTGATGGCCTTGATGGGTTCTCATTTGCCGCCGTTTTTGACGGCCATGCAGGGTTCAACTCGGTCAAGTTCCTCAGGGATGAGCTCTACAAGGAGTGTTGCGCGGCTTTGCAGGGCGGGCTGCTACTGCGTGGAAACGACTTCAAGGCCATTAGAGAAGCACTGCAGGAGACGTTTGAAAAAGTTGACTCCAAATTGTTAAAATGGCTCGAAAGCAATGGGGAGGAAGATGAATCTGGTTCGACAGCTACCCTGATGTTCGTTGGAAACGATACACTGGTCATTTCACATGTTGGTGATTCTTGTGTGGTTCAATCTTGTTCTGGAAAGGCGGAGGTGCTTACGCATCCTCATAGACCGTACGGAAGCAACAAGGCCTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGATCAGCAACGGAAGAATTTGTGGTGACATTGCTGTCTCTCGTGCTTTTGGTGACATGCGGTTCAAGACAAAGAAAAACGAGATGGTGAAGAAAGGAGTTGAAAAAGGGAGATGGACAGAAAAATTTGCTTCTCGAGTACAATTCAGCGGAGACCTTGTTACTGCATCTCCGGATGTTTTTCAAGTAACTTTCGGGACAGATTCAGAATTTGTTCTGTTAGCATCGGATGGCTTATGGGACTACATAAACAGCTCAGATGCGGTGACTTTTGTGAGGAATCAGCTTCGAGAACATGGAGATGTGCAGCTAGCTTGCGATGCGCTTGCTGAAGCTGCTCTGGATCAACGCTCGCAAGATAACATCAGCATTGTTATAGCAGATTTAGGGCGGACAGAATGGCAGGGTTTGCCATTTCAACAACAAAATGTTGTATATGAATTCGGCCAAGCTTTTGCTACGGTTGGGATTGTGTGGCTCGGAATTTGGATCTCAACATCTATGCTTTTGACATGA

Protein Analysis

389

Amino Acids

42.39

Weight (kDa)

5.42

Isoelectric Point (pI)

43.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 60 - 339 1.1e-51 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 635
AasI GACNNNNNNGTC 1 cut(s) 686
Acc36I ACCTGC 1 cut(s) 635
AccB1I GGYRCC 1 cut(s) 197
AccII CGCG 1 cut(s) 338
AccIII TCCGGA 1 cut(s) 823
AclWI GGATC 3 cut(s) 662, 1002, 1148
AcoI YGGCCR 2 cut(s) 277, 1096
AcsI RAATTY 5 cut(s) 669, 776, 860, 1091, 1134
AcuI CTGAAG 1 cut(s) 1002
AfaI GTAC 2 cut(s) 596, 792
AfiI CCNNNNNNNGG 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 523
AjiI CACGTC 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 3 cut(s) 398, 694, 798
AlwI GGATC 3 cut(s) 662, 1002, 1148
AlwNI CAGNNNCTG 1 cut(s) 114
Ama87I CYCGRG 2 cut(s) 201, 786
Aor13HI TCCGGA 1 cut(s) 823
AoxI GGCC 5 cut(s) 241, 277, 381, 609, 1096
ApeKI GCWGC 6 cut(s) 22, 84, 114, 355, 958, 986
ApoI RAATTY 5 cut(s) 669, 776, 860, 1091, 1134
Asp700I GAANNNNTTC 1 cut(s) 864
AspLEI GCGC 4 cut(s) 71, 139, 338, 976
AsuC2I CCSGG 3 cut(s) 141, 202, 203
AsuHPI GGTGA 5 cut(s) 542, 689, 716, 751, 928
AsuNHI GCTAGC 1 cut(s) 961
AvaI CYCGRG 2 cut(s) 201, 786
AxyI CCTNAGG 1 cut(s) 308
BaeGI GKGCMC 1 cut(s) 202
BaeI ACNNNNGTAYC 2 cut(s) 498, 531
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 321
BauI CACGAG 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 6 cut(s) 9, 96, 101, 342, 970, 973
BccI CCATC 8 cut(s) 168, 205, 233, 242, 645, 730, 759, 875
BceAI ACGGC 3 cut(s) 67, 251, 292
BcgI CGANNNNNNTGC 4 cut(s) 172, 206, 959, 993
BcnI CCSGG 3 cut(s) 141, 202, 203
BcoDI GTCTC 3 cut(s) 398, 694, 798
BfaI CTAG 2 cut(s) 102, 962
BfmI CTRYAG 3 cut(s) 23, 191, 398
BfoI RGCGCY 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 635
Bme1390I CCNGG 3 cut(s) 141, 202, 203
BmeT110I CYCGRG 2 cut(s) 201, 786
BmgBI CACGTC 1 cut(s) 160
BmiI GGNNCC 3 cut(s) 32, 145, 199
BmrFI CCNGG 3 cut(s) 141, 202, 203
BmsI GCATC 6 cut(s) 124, 589, 827, 884, 901, 961
BmtI GCTAGC 1 cut(s) 965
BpiI GAAGAC 1 cut(s) 222
BpuMI CCSGG 3 cut(s) 141, 202, 203
BsaI GGTCTC 1 cut(s) 798
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 2 cut(s) 231, 823
BsaXI ACNNNNNCTCC 4 cut(s) 795, 805, 825, 835
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 516
Bse21I CCTNAGG 1 cut(s) 308
Bse3DI GCAATG 3 cut(s) 123, 457, 681
BseAI TCCGGA 1 cut(s) 823
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 5 cut(s) 319, 580, 656, 832, 886
BseLI CCNNNNNNNGG 1 cut(s) 162
BseMI GCAATG 3 cut(s) 123, 457, 681
BseMII CTCAG 2 cut(s) 322, 921
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 202
BseXI GCAGC 6 cut(s) 9, 96, 101, 342, 970, 973
BsgI GTGCAG 1 cut(s) 977
Bsh1236I CGCG 1 cut(s) 338
BshFI GGCC 5 cut(s) 243, 279, 383, 611, 1098
BshNI GGYRCC 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 2 cut(s) 201, 786
BsiSI CCGG 4 cut(s) 140, 202, 232, 824
BsiWI CGTACG 1 cut(s) 594
BslFI GGGAC 2 cut(s) 862, 905
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 3 cut(s) 398, 694, 798
BsmBI CGTCTC 1 cut(s) 398
BsmFI GGGAC 2 cut(s) 862, 905
BsnI GGCC 5 cut(s) 243, 279, 383, 611, 1098
Bso31I GGTCTC 1 cut(s) 798
BsoBI CYCGRG 2 cut(s) 201, 786
Bsp1286I GDGCHC 2 cut(s) 202, 321
Bsp13I TCCGGA 1 cut(s) 823
Bsp143I GATC 3 cut(s) 654, 994, 1140
BspANI GGCC 5 cut(s) 243, 279, 383, 611, 1098
BspCNI CTCAG 2 cut(s) 321, 920
BspEI TCCGGA 1 cut(s) 823
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 3 cut(s) 32, 145, 199
BspMAI CTGCAG 3 cut(s) 27, 195, 402
BspMI ACCTGC 1 cut(s) 635
BspOI GCTAGC 1 cut(s) 965
BspPI GGATC 3 cut(s) 662, 1002, 1148
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 798
BsrDI GCAATG 3 cut(s) 123, 457, 681
BsrI ACTGG 1 cut(s) 516
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 3 cut(s) 654, 994, 1140
BssSI CACGAG 1 cut(s) 693
Bst2BI CACGAG 1 cut(s) 693
Bst4CI ACNGT 2 cut(s) 594, 1114
Bst6I CTCTTC 1 cut(s) 621
BstAPI GCANNNNNTGC 3 cut(s) 114, 134, 1060
BstC8I GCNNGC 5 cut(s) 353, 963, 967, 978, 1004
BstDEI CTNAG 2 cut(s) 308, 907
BstF5I GGATG 5 cut(s) 319, 580, 656, 832, 886
BstFNI CGCG 1 cut(s) 338
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 4 cut(s) 71, 139, 338, 976
BstKTI GATC 3 cut(s) 657, 997, 1143
BstMAI GTCTC 3 cut(s) 398, 694, 798
BstMBI GATC 3 cut(s) 654, 994, 1140
BstMWI GCNNNNNNNGC 7 cut(s) 114, 134, 352, 361, 971, 986, 1060
BstNSI RCATGY 2 cut(s) 527, 712
BstSCI CCNGG 3 cut(s) 139, 200, 201
BstSFI CTRYAG 3 cut(s) 23, 191, 398
BstSLI GKGCMC 1 cut(s) 202
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 6 cut(s) 9, 96, 101, 342, 970, 973
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 1140
BstYI RGATCY 1 cut(s) 1140
Bsu36I CCTNAGG 1 cut(s) 308
BsuRI GGCC 5 cut(s) 243, 279, 383, 611, 1098
BtgZI GCGATG 1 cut(s) 984
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 5 cut(s) 319, 580, 656, 832, 886
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 2 cut(s) 395, 509
BveI ACCTGC 1 cut(s) 635
Cac8I GCNNGC 5 cut(s) 353, 963, 967, 978, 1004
CaiI CAGNNNCTG 1 cut(s) 114
CfoI GCGC 4 cut(s) 71, 139, 338, 976
Cfr9I CCCGGG 1 cut(s) 201
CseI GACGC 1 cut(s) 227
Csp6I GTAC 2 cut(s) 595, 791
CviAII CATG 5 cut(s) 281, 524, 709, 947, 1164
CviQI GTAC 2 cut(s) 595, 791
DdeI CTNAG 2 cut(s) 308, 907
DpnI GATC 3 cut(s) 656, 996, 1142
DpnII GATC 3 cut(s) 654, 994, 1140
DrdI GACNNNNNNGTC 1 cut(s) 686
DseDI GACNNNNNNGTC 1 cut(s) 686
EaeI YGGCCR 2 cut(s) 277, 1096
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
EciI GGCGGA 4 cut(s) 109, 136, 581, 1057
Ecl136II GAGCTC 1 cut(s) 319
Eco147I AGGCCT 1 cut(s) 611
Eco24I GRGCYC 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 798
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 1002
Eco81I CCTNAGG 1 cut(s) 308
Eco88I CYCGRG 2 cut(s) 201, 786
EcoICRI GAGCTC 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 1091
EcoT38I GRGCYC 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 398
FaeI CATG 5 cut(s) 284, 527, 712, 950, 1167
FaqI GGGAC 2 cut(s) 862, 905
FatI CATG 5 cut(s) 280, 523, 708, 946, 1163
FauI CCCGC 1 cut(s) 344
FokI GGATG 5 cut(s) 326, 567, 663, 839, 893
FriOI GRGCYC 1 cut(s) 321
FspBI CTAG 2 cut(s) 102, 962
GlaI GCGC 4 cut(s) 70, 138, 337, 975
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 5 cut(s) 243, 279, 383, 611, 1098
HapII CCGG 4 cut(s) 140, 202, 232, 824
HgaI GACGC 1 cut(s) 227
HhaI GCGC 4 cut(s) 71, 139, 338, 976
Hin1II CATG 5 cut(s) 284, 527, 712, 950, 1167
Hin6I GCGC 4 cut(s) 69, 137, 336, 974
HinP1I GCGC 4 cut(s) 69, 137, 336, 974
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 1101
HinfI GANTC 8 cut(s) 168, 187, 422, 467, 533, 633, 854, 931
HpaII CCGG 4 cut(s) 140, 202, 232, 824
HphI GGTGA 5 cut(s) 542, 689, 716, 751, 928
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 7 cut(s) 173, 238, 638, 859, 880, 910, 1133
Hpy188III TCNNGA 9 cut(s) 64, 558, 620, 718, 786, 824, 847, 941, 992
Hpy8I GTNNAC 1 cut(s) 421
Hpy99I CGWCG 2 cut(s) 161, 187
HpyCH4III ACNGT 2 cut(s) 594, 1114
HpyCH4IV ACGT 2 cut(s) 159, 407
HpyCH4V TGCA 8 cut(s) 25, 128, 193, 284, 346, 400, 818, 958
HpyF10VI GCNNNNNNNGC 7 cut(s) 114, 134, 352, 361, 971, 986, 1060
HpyF3I CTNAG 2 cut(s) 308, 907
HpySE526I ACGT 2 cut(s) 159, 407
Hsp92II CATG 5 cut(s) 284, 527, 712, 950, 1167
HspAI GCGC 4 cut(s) 69, 137, 336, 974
Kpn2I TCCGGA 1 cut(s) 823
Kzo9I GATC 3 cut(s) 654, 994, 1140
LmnI GCTCC 1 cut(s) 122
Lsp1109I GCAGC 6 cut(s) 9, 96, 101, 342, 970, 973
LweI GCATC 6 cut(s) 124, 589, 827, 884, 901, 961
MaeI CTAG 2 cut(s) 102, 962
MaeII ACGT 2 cut(s) 159, 407
MaeIII GTNAC 5 cut(s) 677, 704, 811, 838, 916
MalI GATC 3 cut(s) 656, 996, 1142
MboI GATC 3 cut(s) 654, 994, 1140
MboII GAAGA 5 cut(s) 227, 473, 608, 678, 754
MflI RGATCY 1 cut(s) 1140
MhlI GDGCHC 2 cut(s) 202, 321
MluCI AATT 7 cut(s) 428, 669, 776, 794, 860, 1091, 1134
MlyI GAGTC 2 cut(s) 196, 416
MmeI TCCRAC 1 cut(s) 478
MnlI CCTC 9 cut(s) 21, 44, 199, 317, 451, 562, 594, 622, 921
MroI TCCGGA 1 cut(s) 823
MroXI GAANNNNTTC 1 cut(s) 864
MseI TTAA 2 cut(s) 90, 434
MslI CAYNNNNRTG 2 cut(s) 528, 951
MspA1I CMGCKG 2 cut(s) 22, 801
MspI CCGG 4 cut(s) 140, 202, 232, 824
MspR9I CCNGG 3 cut(s) 141, 202, 203
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 7 cut(s) 114, 134, 352, 361, 971, 986, 1060
NciI CCSGG 3 cut(s) 141, 202, 203
NdeII GATC 3 cut(s) 654, 994, 1140
NheI GCTAGC 1 cut(s) 961
NlaIII CATG 5 cut(s) 284, 527, 712, 950, 1167
NlaIV GGNNCC 3 cut(s) 32, 145, 199
NmuCI GTSAC 3 cut(s) 677, 704, 916
NspI RCATGY 2 cut(s) 527, 712
PaeR7I CTCGAG 1 cut(s) 786
PaqCI CACCTGC 1 cut(s) 635
PceI AGGCCT 1 cut(s) 611
PciI ACATGT 1 cut(s) 523
PcsI WCGNNNNNNNCGW 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 864
PfeI GAWTC 6 cut(s) 168, 467, 533, 633, 854, 931
Pfl23II CGTACG 1 cut(s) 594
PflFI GACNNNGTC 1 cut(s) 221
PleI GAGTC 2 cut(s) 195, 416
PpsI GAGTC 2 cut(s) 195, 416
PscI ACATGT 1 cut(s) 523
Psp124BI GAGCTC 1 cut(s) 321
PspLI CGTACG 1 cut(s) 594
PspN4I GGNNCC 3 cut(s) 32, 145, 199
PstI CTGCAG 3 cut(s) 27, 195, 402
PstNI CAGNNNCTG 1 cut(s) 114
PsuI RGATCY 1 cut(s) 1140
PsyI GACNNNGTC 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 22
RsaI GTAC 2 cut(s) 596, 792
RsaNI GTAC 2 cut(s) 595, 791
RseI CAYNNNNRTG 2 cut(s) 528, 951
SacI GAGCTC 1 cut(s) 321
SaqAI TTAA 2 cut(s) 90, 434
Sau3AI GATC 3 cut(s) 654, 994, 1140
SchI GAGTC 2 cut(s) 196, 416
ScrFI CCNGG 3 cut(s) 141, 202, 203
SduI GDGCHC 2 cut(s) 202, 321
SfaNI GCATC 6 cut(s) 124, 589, 827, 884, 901, 961
SfcI CTRYAG 3 cut(s) 23, 191, 398
Sfr274I CTCGAG 1 cut(s) 786
SlaI CTCGAG 1 cut(s) 786
SmaI CCCGGG 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 528, 951
SmlI CTYRAG 1 cut(s) 786
SmoI CTYRAG 1 cut(s) 786
Sse9I AATT 7 cut(s) 428, 669, 776, 794, 860, 1091, 1134
SseBI AGGCCT 1 cut(s) 611
SspMI CTAG 2 cut(s) 102, 962
SstI GAGCTC 1 cut(s) 321
StuI AGGCCT 1 cut(s) 611
StyD4I CCNGG 3 cut(s) 139, 200, 201
TaaI ACNGT 2 cut(s) 594, 1114
TaiI ACGT 2 cut(s) 162, 410
TaqI TCGA 5 cut(s) 182, 444, 476, 787, 940
TaqII GACCGA 2 cut(s) 170, 286
TasI AATT 7 cut(s) 428, 669, 776, 794, 860, 1091, 1134
TatI WGTACW 1 cut(s) 790
TauI GCSGC 4 cut(s) 57, 74, 266, 341
TfiI GAWTC 6 cut(s) 168, 467, 533, 633, 854, 931
Tru1I TTAA 2 cut(s) 90, 434
Tru9I TTAA 2 cut(s) 90, 434
TscAI CASTG 2 cut(s) 402, 516
TseFI GTSAC 3 cut(s) 677, 704, 916
TseI GCWGC 6 cut(s) 22, 84, 114, 355, 958, 986
Tsp45I GTSAC 3 cut(s) 677, 704, 916
TspDTI ATGAA 2 cut(s) 480, 1104
TspGWI ACGGA 2 cut(s) 612, 678
TspMI CCCGGG 1 cut(s) 201
TspRI CASTG 2 cut(s) 402, 516
Tth111I GACNNNGTC 1 cut(s) 221
XapI RAATTY 5 cut(s) 669, 776, 860, 1091, 1134
XceI RCATGY 2 cut(s) 527, 712
XhoI CTCGAG 1 cut(s) 786
XmaI CCCGGG 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 864
XspI CTAG 2 cut(s) 102, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.