Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Reverse (-)

1494564 .. 1497750

Gene Structure 3187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGCTCTGTTAAGTCCACAACTGCAGAGGTTCCTCTTAACCAAGTACAACTGCAGCGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGAGGTGGCGCATTCAAGACCACAACCACCAACAAAAACAGTGGCTTTTGTAACAAGTCAACTACCCCACTCTGTTCGGCGATTGCTATAGACGCGCCGGGATCGTCCTCTGCCGATGTCGCCGGAGTTCGGTGGGGATCTACGAGCTTGCAGGGAGCGCGGGAAGAGATGGAAGACGGCGTTGTTGTCCGGTCCGATGGCCTTGATGCTTATTCATTTGCGGCGGTTTTTGATGGACATGCTGGCTTCTCCTCAGTCAAGTTCCTCAGAGATGAGCTCTACAAAGAGTGTTGTGCGGCTTTACAAGGTGGTTTGCTATTGAGTGGGAAGGATATCAAAGCCATTAGAGAGGCATTACAGGAGGCTTTTGAAAAAGTTGATGCAAAATTGTTGGATTGGCTTGAAAGGAATGGGGAGGAAGATGGGTCTGGTTCAACAGCTACTGTTATGTTCGTTGGGAACGATATGCTGTTCATTTCACATGTTGGCGATTCATCTGTGGTTCAATCTCGTTCTGGAAAAGCAGAGGTGTTGACCAGTCCTCATCGACCATATGGAAGCAACAAGGTCTGTCTTCAAGAAATTAAAAGAATCAGAGAAGCAGGTGGATGGATCGTCAATGGAAGAATTTGTGGAGACATTGCTGTATCTCGTGCTTTTGGTGACTTGCGGTTCAAGACAAAGAAAAACGAGATGCTGCAGAAAGGAGTTGAAGAAGGAAGATGGACGGAGAAATTTGTTTCTCGTGTGCAATTCAGTGGAGACCTTGTTACTGCATCTCCAGACGTTTATCAAGCAAGTCTTGGGGCAGACTCAGAATTTCTAGTGCTAGCATCTGATGGCTTATGGGATTACATAAACAGTTCAGATGCGGTTTCTTTTGTAAGGAATCAGCTTCGACAACATGGAGATGTCCAGGTATATATGGCCTACACATTTGTATTTGGAAAACTGCTCTGGGGTAGAAAGTCACAAGATAATATCAGCATCGTAATTGCGGATTTAGGGAGAACAGACTGGCAACGTTTGCCATTCCAACAACACAATGTTGTATATGAATTTGGGCAAGCTTTCGCTACTATTGGGCTCGTTTCGCTTGGAATTTGGATGTCAACATCTTTGCTTTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

407

Amino Acids

43.85

Weight (kDa)

5.84

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	76 - 334	1.8e-48	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	683
Acc36I	ACCTGC	1 cut(s)	683
AccII	CGCG	2 cut(s)	185, 250
AciI	CCGC	8 cut(s)	57, 250, 311, 314, 386, 760, 962, 1088
AclI	AACGTT	1 cut(s)	1114
AclWI	GGATC	3 cut(s)	199, 235, 710
AcsI	RAATTY	5 cut(s)	717, 824, 908, 1148, 1191
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	219
AflIII	ACRYGT	1 cut(s)	571
AgsI	TTSAA	8 cut(s)	106, 461, 494, 525, 596, 668, 766, 803
AjnI	CCWGG	1 cut(s)	1005
AluBI	AGCT	5 cut(s)	237, 367, 530, 985, 1160
AluI	AGCT	5 cut(s)	237, 367, 530, 985, 1160
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	720, 846
AlwI	GGATC	3 cut(s)	199, 235, 710
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	2 cut(s)	289, 1017
ApeKI	GCWGC	2 cut(s)	54, 787
ApoI	RAATTY	5 cut(s)	717, 824, 908, 1148, 1191
AspLEI	GCGC	3 cut(s)	101, 187, 250
AspS9I	GGNCC	1 cut(s)	282
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	764
AsuNHI	GCTAGC	1 cut(s)	919
AvaII	GGWCC	1 cut(s)	282
BanII	GRGCYC	2 cut(s)	369, 1179
BauI	CACGAG	2 cut(s)	741, 834
BbsI	GAAGAC	2 cut(s)	270, 656
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	66, 774
BccI	CCATC	7 cut(s)	253, 281, 317, 506, 693, 807, 923
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	1007
BcnI	CCSGG	1 cut(s)	189
BcoDI	GTCTC	2 cut(s)	720, 846
BfaI	CTAG	2 cut(s)	914, 920
BfmI	CTRYAG	4 cut(s)	23, 52, 177, 788
BfuAI	ACCTGC	1 cut(s)	683
BisI	GCNGC	4 cut(s)	55, 312, 387, 788
BlsI	GCNGC	4 cut(s)	56, 313, 388, 789
Bme1390I	CCNGG	2 cut(s)	189, 1007
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	2 cut(s)	189, 1007
BmsI	GCATC	7 cut(s)	286, 460, 774, 875, 932, 949, 1086
BmtI	GCTAGC	1 cut(s)	923
BpiI	GAAGAC	2 cut(s)	270, 656
BplI	GAGNNNNNCTC	2 cut(s)	351, 383
BpmI	CTGGAG	1 cut(s)	855
BpuMI	CCSGG	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	846
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	4 cut(s)	843, 853, 873, 883
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse1I	ACTGG	2 cut(s)	627, 1112
Bse3DI	GCAATG	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	1007
BseGI	GGATG	2 cut(s)	704, 1203
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	3 cut(s)	357, 370, 918
BseNI	ACTGG	2 cut(s)	627, 1112
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	66, 774
Bsh1236I	CGCG	2 cut(s)	185, 250
BshFI	GGCC	2 cut(s)	291, 1019
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	3 cut(s)	188, 213, 280
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	720, 846
BsmI	GAATGC	1 cut(s)	101
BsnI	GGCC	2 cut(s)	291, 1019
Bso31I	GGTCTC	1 cut(s)	846
Bsp1286I	GDGCHC	2 cut(s)	369, 1179
Bsp143I	GATC	3 cut(s)	191, 227, 702
BspACI	CCGC	8 cut(s)	57, 250, 311, 314, 386, 760, 962, 1088
BspANI	GGCC	2 cut(s)	291, 1019
BspCNI	CTCAG	3 cut(s)	356, 369, 917
BspFNI	CGCG	2 cut(s)	185, 250
BspHI	TCATGA	1 cut(s)	1220
BspLI	GGNNCC	1 cut(s)	32
BspMAI	CTGCAG	3 cut(s)	27, 56, 792
BspMI	ACCTGC	1 cut(s)	683
BspOI	GCTAGC	1 cut(s)	923
BspPI	GGATC	3 cut(s)	199, 235, 710
BspTNI	GGTCTC	1 cut(s)	846
BsrDI	GCAATG	1 cut(s)	729
BsrI	ACTGG	2 cut(s)	627, 1112
BssMI	GATC	3 cut(s)	191, 227, 702
BssSI	CACGAG	2 cut(s)	741, 834
Bst2BI	CACGAG	2 cut(s)	741, 834
Bst2UI	CCWGG	1 cut(s)	1007
Bst4CI	ACNGT	3 cut(s)	131, 535, 953
Bst6I	CTCTTC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	1117
BstC8I	GCNNGC	4 cut(s)	239, 334, 921, 1158
BstDEI	CTNAG	3 cut(s)	343, 356, 904
BstF5I	GGATG	2 cut(s)	704, 1203
BstFNI	CGCG	2 cut(s)	185, 250
BstHHI	GCGC	3 cut(s)	101, 187, 250
BstKTI	GATC	3 cut(s)	194, 230, 705
BstMAI	GTCTC	2 cut(s)	720, 846
BstMBI	GATC	3 cut(s)	191, 227, 702
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 209, 247, 1117, 1183
BstNI	CCWGG	1 cut(s)	1007
BstNSI	RCATGY	2 cut(s)	332, 575
BstSCI	CCNGG	2 cut(s)	187, 1005
BstSFI	CTRYAG	4 cut(s)	23, 52, 177, 788
BstUI	CGCG	2 cut(s)	185, 250
BstV1I	GCAGC	2 cut(s)	66, 774
BstV2I	GAAGAC	2 cut(s)	270, 656
BstX2I	RGATCY	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	227
BsuRI	GGCC	2 cut(s)	291, 1019
BtsCI	GGATG	2 cut(s)	704, 1203
BtsIMutI	CAGTG	2 cut(s)	136, 853
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	4 cut(s)	239, 334, 921, 1158
CaiI	CAGNNNCTG	1 cut(s)	533
CciI	TCATGA	1 cut(s)	1220
CfoI	GCGC	3 cut(s)	101, 187, 250
Cfr13I	GGNCC	1 cut(s)	282
CpoI	CGGWCCG	1 cut(s)	282
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CspI	CGGWCCG	1 cut(s)	282
CviAII	CATG	4 cut(s)	329, 572, 995, 1221
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	3 cut(s)	343, 356, 904
DpnI	GATC	3 cut(s)	193, 229, 704
DpnII	GATC	3 cut(s)	191, 227, 702
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Ecl136II	GAGCTC	1 cut(s)	367
Eco24I	GRGCYC	2 cut(s)	369, 1179
Eco31I	GGTCTC	1 cut(s)	846
Eco32I	GATATC	1 cut(s)	424
Eco47I	GGWCC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	367
EcoICRI	GAGCTC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	1005
EcoRV	GATATC	1 cut(s)	424
EcoT38I	GRGCYC	2 cut(s)	369, 1179
FaeI	CATG	4 cut(s)	332, 575, 998, 1224
FalI	AAGNNNNNCTT	2 cut(s)	876, 908
FatI	CATG	4 cut(s)	328, 571, 994, 1220
FauI	CCCGC	1 cut(s)	243
FauNDI	CATATG	1 cut(s)	643
Fnu4HI	GCNGC	4 cut(s)	55, 312, 387, 788
FokI	GGATG	2 cut(s)	711, 1210
FriOI	GRGCYC	2 cut(s)	369, 1179
Fsp4HI	GCNGC	4 cut(s)	55, 312, 387, 788
FspBI	CTAG	2 cut(s)	914, 920
GlaI	GCGC	3 cut(s)	100, 186, 249
GluI	GCNGC	4 cut(s)	55, 312, 387, 788
GsuI	CTGGAG	1 cut(s)	855
HaeIII	GGCC	2 cut(s)	291, 1019
HapII	CCGG	3 cut(s)	188, 213, 280
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	3 cut(s)	101, 187, 250
Hin1II	CATG	4 cut(s)	332, 575, 998, 1224
Hin6I	GCGC	3 cut(s)	99, 185, 248
HinP1I	GCGC	3 cut(s)	99, 185, 248
HincII	GTYRAC	3 cut(s)	150, 624, 1203
HindII	GTYRAC	3 cut(s)	150, 624, 1203
HindIII	AAGCTT	1 cut(s)	1158
HinfI	GANTC	4 cut(s)	581, 681, 902, 979
HpaII	CCGG	3 cut(s)	188, 213, 280
HphI	GGTGA	1 cut(s)	764
Hpy166II	GTNNAC	4 cut(s)	17, 150, 624, 1203
Hpy188I	TCNGA	6 cut(s)	286, 359, 686, 907, 928, 958
Hpy188III	TCNNGA	6 cut(s)	106, 606, 668, 766, 872, 1221
Hpy8I	GTNNAC	4 cut(s)	17, 150, 624, 1203
HpyAV	CCTTC	2 cut(s)	412, 800
HpyCH4III	ACNGT	3 cut(s)	131, 535, 953
HpyCH4IV	ACGT	2 cut(s)	876, 1114
HpyCH4V	TGCA	7 cut(s)	25, 54, 241, 473, 790, 841, 866
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 209, 247, 1117, 1183
HpyF3I	CTNAG	3 cut(s)	343, 356, 904
HpySE526I	ACGT	2 cut(s)	876, 1114
Hsp92II	CATG	4 cut(s)	332, 575, 998, 1224
HspAI	GCGC	3 cut(s)	99, 185, 248
Kzo9I	GATC	3 cut(s)	191, 227, 702
LmnI	GCTCC	1 cut(s)	245
Lsp1109I	GCAGC	2 cut(s)	66, 774
LweI	GCATC	7 cut(s)	286, 460, 774, 875, 932, 949, 1086
MaeI	CTAG	2 cut(s)	914, 920
MaeII	ACGT	2 cut(s)	876, 1114
MaeIII	GTNAC	4 cut(s)	140, 752, 859, 1059
MalI	GATC	3 cut(s)	193, 229, 704
MboI	GATC	3 cut(s)	191, 227, 702
MboII	GAAGA	8 cut(s)	266, 275, 521, 656, 726, 815, 822, 1209
MflI	RGATCY	1 cut(s)	227
MhlI	GDGCHC	2 cut(s)	369, 1179
MluCI	AATT	9 cut(s)	476, 672, 717, 824, 842, 908, 1083, 1148, 1191
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	2 cut(s)	462, 1150
MseI	TTAA	3 cut(s)	11, 38, 675
MslI	CAYNNNNRTG	1 cut(s)	999
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	3 cut(s)	188, 213, 280
MspR9I	CCNGG	2 cut(s)	189, 1007
Mva1269I	GAATGC	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	1007
MvnI	CGCG	2 cut(s)	185, 250
MwoI	GCNNNNNNNGC	5 cut(s)	182, 209, 247, 1117, 1183
NciI	CCSGG	1 cut(s)	189
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	3 cut(s)	191, 227, 702
NheI	GCTAGC	1 cut(s)	919
NlaIII	CATG	4 cut(s)	332, 575, 998, 1224
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	2 cut(s)	752, 1059
NspI	RCATGY	2 cut(s)	332, 575
PagI	TCATGA	1 cut(s)	1220
PaqCI	CACCTGC	1 cut(s)	683
PciI	ACATGT	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PctI	GAATGC	1 cut(s)	101
PfeI	GAWTC	3 cut(s)	581, 681, 979
PkrI	GCNGC	4 cut(s)	56, 313, 388, 789
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
PscI	ACATGT	1 cut(s)	571
Psp124BI	GAGCTC	1 cut(s)	369
Psp1406I	AACGTT	1 cut(s)	1114
Psp6I	CCWGG	1 cut(s)	1005
PspGI	CCWGG	1 cut(s)	1005
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	282
PstI	CTGCAG	3 cut(s)	27, 56, 792
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	227
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	999
Rsr2I	CGGWCCG	1 cut(s)	282
RsrII	CGGWCCG	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	369
SaqAI	TTAA	3 cut(s)	11, 38, 675
SatI	GCNGC	4 cut(s)	55, 312, 387, 788
Sau3AI	GATC	3 cut(s)	191, 227, 702
Sau96I	GGNCC	1 cut(s)	282
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	2 cut(s)	189, 1007
SduI	GDGCHC	2 cut(s)	369, 1179
SfaNI	GCATC	7 cut(s)	286, 460, 774, 875, 932, 949, 1086
SfcI	CTRYAG	4 cut(s)	23, 52, 177, 788
SinI	GGWCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	999
Sse9I	AATT	9 cut(s)	476, 672, 717, 824, 842, 908, 1083, 1148, 1191
SsiI	CCGC	8 cut(s)	57, 250, 311, 314, 386, 760, 962, 1088
SspMI	CTAG	2 cut(s)	914, 920
SstI	GAGCTC	1 cut(s)	369
StyD4I	CCNGG	2 cut(s)	187, 1005
TaaI	ACNGT	3 cut(s)	131, 535, 953
TaiI	ACGT	2 cut(s)	879, 1117
TaqI	TCGA	2 cut(s)	637, 988
TasI	AATT	9 cut(s)	476, 672, 717, 824, 842, 908, 1083, 1148, 1191
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	2 cut(s)	314, 389
TfiI	GAWTC	3 cut(s)	581, 681, 979
Tru1I	TTAA	3 cut(s)	11, 38, 675
Tru9I	TTAA	3 cut(s)	11, 38, 675
TscAI	CASTG	2 cut(s)	136, 853
TseFI	GTSAC	2 cut(s)	752, 1059
TseI	GCWGC	2 cut(s)	54, 787
Tsp45I	GTSAC	2 cut(s)	752, 1059
TspDTI	ATGAA	5 cut(s)	294, 553, 573, 1161, 1209
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	2 cut(s)	136, 853
VpaK11BI	GGWCC	1 cut(s)	282
XapI	RAATTY	5 cut(s)	717, 824, 908, 1148, 1191
XceI	RCATGY	2 cut(s)	332, 575
XspI	CTAG	2 cut(s)	914, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.