Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Reverse (-)

52869475 .. 52872021

Gene Structure 2547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0430100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2418 bp

ATGAAACCAGAGGAGGAGATGGCTTTGAAAATCGAGGGTATGAAGACATTGGAAGCCGAAGTTGTGGGTGTTGAATCTGCCAGATATGAGCTGATTACTTGGTTAGTACAAGGAGGAGCAGCATCATCATCATCGTCAACGCGTGCTGTGATATCAGTGGTTGGCATGGGAGGACTTGGTAAGACCACCCTTGCCAAGAAAGTTTATGATAACCAATTGGTGATAGAGCACTTTGACTGCTATGCTTGGATTACAGTGTCACAGTTATACAAGATTGAGGATGTTCTGAGGATGATGATAATGCAATTCTACAAGGCGAGGCCAGAGTATATCCCTGACGGGGTTGATGCAATGGATGAGGAGTCCCTAATCAGAAAATCAAGAGAATATTTAGAGCAAAAGAGGTATGTGGTTGTGTTCGATGATGTGTGGAATGTTGATTTCTGGGGGGCTATAGAACATGCTTTACCGGATAATGATAAAGGCGGAAGAATAATGATCACTACCCGGATTAAAGATGTTGCTGATTTTTGCAAAAACTCTAGTTTTGTTCATGTTCATTATTTGCAACCTCTACCTCCAGACAAGGCATGGGAATTATTTTGTAGAAAGGCATTTCAATTTGATCAATTGGAGGGTAAATGTCCTCCACAGTTGGAGGGGTTGTCTCTTAAAATGGTTAAAAAATGTGAAGGGTTACCTTTGGCAATTGTTTCTCTAGGTGCTCTTCTGTCAGCCAAAGTTAAAGTTTTTTCTGAATGGAAAAAGTTGTACAACAGCCTCAGCTCAGAGTTGGAAAGTAATCCCCATCTCTCAAGCCTCACAAGAATCTTATCCTTCAGCTATCATCATCTACCATATTACCTCAAATCCTGTGTTTTATACTTTGGCATATTTCCTGAGGATTACTCTATTAGCTGCATAAGACTAGTCCGATTGTGGATAGCTGAAGGCTTTGTGAAAGTGACCAAGGGGAAGACATTGGAGGAGGTTGCAGAGGGATATTTGACTGAGCTGATCCATAGAAGCCTGGTTCAAGTATCAAAAGTTTACATTGATGGAAAAGCCAGAAGCTGCCGAGTTCATGACCTCTTGCGTGAAGTCCTCCTTAAAAAGGCATTGGATTCGAGCTTCTGTCACATGTTATCAGAAGATGAGTCTACTTTTACTCCAACCACTCGACGCCTCTCCATAGACAGCAGCCTCTCTGATGCTTTGGGAAGCATAAGCATCGAACAGTCTCATATCCGTTCTGTTTTTACTTTCAACCAAGATGAATTGCCCAAGTACTCGTTTCTCAATACAATCAGTGCGAACTTTAAGCTTCTGAAGGTATTGGATTTTGCAGATGCTCCAATACATCATCTTCCTAAGTATGTGGGGAGTTTATACTACTTGAGGTACTTAAGCCTACGTAATACAAAGGTGAAGCTGCTGCCAAAATCCATAGCTAAGCTGCAAAATTTAGAAACCCTGGATCTAAAACAGTCTCTTGTGTGTGAAATACCAGCAAAGCTCAATAAGCTTCTTAAGTTGAGACATATTTTGGCCTGCTATTGTGACAGCGAGATAGACTTCATCATGAGTTATGAACGTGGAGTGAAGATAAATGATGGTGTAGGGTGCTTGCTAGCTTTGCAAAAGCTATACCATGTGGATGCAAACCATGGAGGGATCAGGCTAATTCAAGAACTGAAAAAGTTAAGGCAGCTGAGAAAGTTAGGCCTAAAAAATTTGAGAAGTGAAGATGGACAGGCTCGTTGTGCTTCTATTGAAAACATGAACCACCTTGAATCTCTAGAAGTATGCGCAATGAGCGAGGATGCAGTCCTCGATGTACAGTACATTTCAACTCCACCAGAATCCATTCGGTTTCTCTACTTGAAGGGGCATCTAGAGAAGTTACCGAGTTGGATTTCTAAGTTAGAGCATCTAGTCAAGTTGAGGATTTTCTGGTCAAGGTTAAGAGATGATCCACTAAAAGCCCTTCAAAATCTGCCCAAATTGTTGGAGCTTGGAATCTCATACAAGGCATATGATGGTGTACAGCTGCATTTTGAGGGTGGAGGATTTCAGAAACTAAAGGTGCTAAAACTCAGGCACTTGGAGGGACTAAATTCACTGATTATTGACAATGGAGTTATGCCTCTTCTCCAAGAGCTACAACTTGGGCCTTCACCACAACTGAAGGAAGTTCCCTCTGGAATCCAACACTTGAGAGATCTAAGAACTCTTAGATTTGTTGACATGCCTGAAGCTTTCAGACGTGGAATGAAAAGCCAGCATTATCGGGTTGTTGAGCATGTAACGGATGTTCTCTTTAGTTACAAGTTAGGGCCAAGGTGTGGCATATATGAAACTTACACACTGTTCAGTTATCCAGTCCGAACTAAGGAACGCCTATGTATAGAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

805

Amino Acids

92.08

Weight (kDa)

8.57

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	47 - 207	4.4e-42	NB-ARC domain
WHD_DRP	PF23559	298 - 367	4.4e-23	Disease resistance protein Winged helix domain
LRR_14	PF23598	415 - 747	2.2e-45	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1810
AccB7I	CCANNNNNTGG	1 cut(s)	2345
AccI	GTMKAC	1 cut(s)	1160
AccII	CGCG	1 cut(s)	142
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	4 cut(s)	1012, 1485, 1682, 1967
AcsI	RAATTY	3 cut(s)	1462, 1732, 2116
AcuI	CTGAAG	5 cut(s)	823, 969, 1349, 2207, 2274
AcyI	GRCGYC	1 cut(s)	1183
AfaI	GTAC	7 cut(s)	108, 773, 1289, 1403, 1839, 1844, 2046
AfiI	CCNNNNNNNGG	4 cut(s)	340, 1114, 2345, 2392
AflII	CTTAAG	2 cut(s)	1405, 1529
AflIII	ACRYGT	2 cut(s)	140, 1140
AhlI	ACTAGT	1 cut(s)	928
AjiI	CACGTC	1 cut(s)	2267
AjnI	CCWGG	2 cut(s)	1029, 1473
Alw21I	GWGCWC	2 cut(s)	231, 727
Alw26I	GTCTC	4 cut(s)	672, 1245, 1494, 1531
AlwI	GGATC	4 cut(s)	1012, 1485, 1682, 1967
AlwNI	CAGNNNCTG	1 cut(s)	1074
AoxI	GGCC	5 cut(s)	320, 1548, 1723, 2171, 2336
ApeKI	GCWGC	9 cut(s)	119, 918, 1074, 1200, 1432, 1435, 1456, 1708, 2050
ApoI	RAATTY	3 cut(s)	1462, 1732, 2116
Asp700I	GAANNNNTTC	1 cut(s)	1866
AspLEI	GCGC	1 cut(s)	1811
AspS9I	GGNCC	2 cut(s)	2171, 2336
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	3 cut(s)	232, 1438, 2169
AsuNHI	GCTAGC	1 cut(s)	1630
AxyI	CCTNAGG	1 cut(s)	900
BbsI	GAAGAC	2 cut(s)	50, 983
Bbv12I	GWGCWC	2 cut(s)	231, 727
BbvCI	CCTCAGC	1 cut(s)	782
BbvI	GCAGC	9 cut(s)	131, 905, 1061, 1212, 1419, 1422, 1443, 1720, 2037
BccI	CCATC	6 cut(s)	13, 816, 1052, 1607, 1742, 2033
BcgI	CGANNNNNNTGC	4 cut(s)	1107, 1141, 1213, 1247
BciT130I	CCWGG	2 cut(s)	1031, 1475
BclI	TGATCA	2 cut(s)	498, 625
BcnI	CCSGG	1 cut(s)	508
BcoDI	GTCTC	4 cut(s)	672, 1245, 1494, 1531
BcuI	ACTAGT	1 cut(s)	928
BfaI	CTAG	7 cut(s)	543, 719, 929, 1631, 1799, 1895, 1934
BfmI	CTRYAG	1 cut(s)	453
BfrI	CTTAAG	2 cut(s)	1405, 1529
BglII	AGATCT	1 cut(s)	2221
BisI	GCNGC	9 cut(s)	120, 919, 1075, 1201, 1433, 1436, 1457, 1709, 2051
BlpI	GCTNAGC	1 cut(s)	1452
BlsI	GCNGC	9 cut(s)	121, 920, 1076, 1202, 1434, 1437, 1458, 1710, 2052
BmcAI	AGTACT	1 cut(s)	1289
Bme1390I	CCNGG	3 cut(s)	508, 1031, 1475
BmgBI	CACGTC	1 cut(s)	2267
BmgT120I	GGNCC	2 cut(s)	2171, 2336
BmrFI	CCNGG	3 cut(s)	508, 1031, 1475
BmsI	GCATC	9 cut(s)	131, 337, 1201, 1239, 1339, 1648, 1813, 1900, 1939
BmtI	GCTAGC	1 cut(s)	1634
BpiI	GAAGAC	2 cut(s)	50, 983
BplI	GAGNNNNNCTC	2 cut(s)	893, 925
BpmI	CTGGAG	1 cut(s)	564
Bpu10I	CCTNAGC	1 cut(s)	782
Bpu1102I	GCTNAGC	1 cut(s)	1452
BpuEI	CTTGAG	3 cut(s)	799, 1417, 2236
BpuMI	CCSGG	1 cut(s)	508
BsaAI	YACGTR	1 cut(s)	1415
BsaHI	GRCGYC	1 cut(s)	1183
BsaJI	CCNNGG	4 cut(s)	969, 1473, 1666, 2339
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	4 cut(s)	650, 680, 1153, 1183
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 1114, 2345, 2392
Bse1I	ACTGG	1 cut(s)	2381
Bse21I	CCTNAGG	1 cut(s)	900
Bse3DI	GCAATG	2 cut(s)	357, 1818
BseBI	CCWGG	2 cut(s)	1031, 1475
BseDI	CCNNGG	4 cut(s)	969, 1473, 1666, 2339
BseGI	GGATG	6 cut(s)	286, 297, 361, 1663, 1828, 2317
BseLI	CCNNNNNNNGG	4 cut(s)	340, 1114, 2345, 2392
BseMI	GCAATG	2 cut(s)	357, 1818
BseMII	CTCAG	7 cut(s)	278, 796, 801, 891, 1002, 1703, 2110
BseNI	ACTGG	1 cut(s)	2381
BseRI	GAGGAG	5 cut(s)	26, 29, 129, 374, 1001
BseXI	GCAGC	9 cut(s)	131, 905, 1061, 1212, 1419, 1422, 1443, 1720, 2037
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	5 cut(s)	322, 1550, 1725, 2173, 2338
BsiHKAI	GWGCWC	2 cut(s)	231, 727
BsiSI	CCGG	2 cut(s)	470, 508
BslFI	GGGAC	2 cut(s)	349, 2124
BslI	CCNNNNNNNGG	4 cut(s)	340, 1114, 2345, 2392
BsmAI	GTCTC	4 cut(s)	672, 1245, 1494, 1531
BsmFI	GGGAC	2 cut(s)	349, 2124
BsnI	GGCC	5 cut(s)	322, 1550, 1725, 2173, 2338
Bsp1286I	GDGCHC	2 cut(s)	231, 727
Bsp1407I	TGTACA	3 cut(s)	771, 1837, 2044
Bsp143I	GATC	7 cut(s)	498, 625, 1017, 1477, 1674, 1972, 2221
Bsp1720I	GCTNAGC	1 cut(s)	1452
Bsp19I	CCATGG	1 cut(s)	1666
BspACI	CCGC	1 cut(s)	486
BspANI	GGCC	5 cut(s)	322, 1550, 1725, 2173, 2338
BspCNI	CTCAG	7 cut(s)	279, 795, 800, 892, 1003, 1704, 2109
BspFNI	CGCG	1 cut(s)	142
BspHI	TCATGA	2 cut(s)	1084, 1581
BspOI	GCTAGC	1 cut(s)	1634
BspPI	GGATC	4 cut(s)	1012, 1485, 1682, 1967
BspQI	GCTCTTC	1 cut(s)	732
BspTI	CTTAAG	2 cut(s)	1405, 1529
BsrDI	GCAATG	2 cut(s)	357, 1818
BsrGI	TGTACA	3 cut(s)	771, 1837, 2044
BsrI	ACTGG	1 cut(s)	2381
BssECI	CCNNGG	4 cut(s)	969, 1473, 1666, 2339
BssMI	GATC	7 cut(s)	498, 625, 1017, 1477, 1674, 1972, 2221
BssNI	GRCGYC	1 cut(s)	1183
BssT1I	CCWWGG	3 cut(s)	969, 1666, 2339
Bst2UI	CCWGG	2 cut(s)	1031, 1475
Bst4CI	ACNGT	7 cut(s)	256, 264, 654, 1239, 1488, 1842, 2370
Bst6I	CTCTTC	2 cut(s)	732, 2154
BstACI	GRCGYC	1 cut(s)	1183
BstAFI	CTTAAG	2 cut(s)	1405, 1529
BstAUI	TGTACA	3 cut(s)	771, 1837, 2044
BstBAI	YACGTR	1 cut(s)	1415
BstC8I	GCNNGC	5 cut(s)	144, 1552, 1628, 1632, 2282
BstDSI	CCRYGG	1 cut(s)	1666
BstEII	GGTNACC	1 cut(s)	696
BstENI	CCTNNNNNAGG	1 cut(s)	1112
BstF5I	GGATG	6 cut(s)	286, 297, 361, 1663, 1828, 2317
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	1811
BstKTI	GATC	7 cut(s)	501, 628, 1020, 1480, 1677, 1975, 2224
BstMAI	GTCTC	4 cut(s)	672, 1245, 1494, 1531
BstMBI	GATC	7 cut(s)	498, 625, 1017, 1477, 1674, 1972, 2221
BstMWI	GCNNNNNNNGC	4 cut(s)	1522, 1636, 1763, 1815
BstNI	CCWGG	2 cut(s)	1031, 1475
BstNSI	RCATGY	4 cut(s)	464, 1144, 2251, 2306
BstPI	GGTNACC	1 cut(s)	696
BstSCI	CCNGG	3 cut(s)	506, 1029, 1473
BstSFI	CTRYAG	1 cut(s)	453
BstSNI	TACGTA	1 cut(s)	1415
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	9 cut(s)	131, 905, 1061, 1212, 1419, 1422, 1443, 1720, 2037
BstV2I	GAAGAC	2 cut(s)	50, 983
BstX2I	RGATCY	2 cut(s)	1477, 2221
BstXI	CCANNNNNNTGG	1 cut(s)	2008
BstYI	RGATCY	2 cut(s)	1477, 2221
Bsu36I	CCTNAGG	1 cut(s)	900
BsuRI	GGCC	5 cut(s)	322, 1550, 1725, 2173, 2338
BtgI	CCRYGG	1 cut(s)	1666
BtrI	CACGTC	1 cut(s)	2267
BtsCI	GGATG	6 cut(s)	286, 297, 361, 1663, 1828, 2317
BtsIMutI	CAGTG	5 cut(s)	162, 261, 1315, 2120, 2366
Cac8I	GCNNGC	5 cut(s)	144, 1552, 1628, 1632, 2282
CaiI	CAGNNNCTG	1 cut(s)	1074
CciI	TCATGA	2 cut(s)	1084, 1581
CfoI	GCGC	1 cut(s)	1811
Cfr13I	GGNCC	2 cut(s)	2171, 2336
CseI	GACGC	1 cut(s)	1191
Csp6I	GTAC	7 cut(s)	107, 772, 1288, 1402, 1838, 1843, 2045
CviQI	GTAC	7 cut(s)	107, 772, 1288, 1402, 1838, 1843, 2045
DpnI	GATC	7 cut(s)	500, 627, 1019, 1479, 1676, 1974, 2223
DpnII	GATC	7 cut(s)	498, 625, 1017, 1477, 1674, 1972, 2221
Eam1104I	CTCTTC	2 cut(s)	732, 2154
EarI	CTCTTC	2 cut(s)	732, 2154
EciI	GGCGGA	1 cut(s)	501
Eco105I	TACGTA	1 cut(s)	1415
Eco130I	CCWWGG	3 cut(s)	969, 1666, 2339
Eco147I	AGGCCT	1 cut(s)	1725
Eco32I	GATATC	1 cut(s)	153
Eco57I	CTGAAG	5 cut(s)	823, 969, 1349, 2207, 2274
Eco81I	CCTNAGG	1 cut(s)	900
Eco91I	GGTNACC	1 cut(s)	696
EcoNI	CCTNNNNNAGG	1 cut(s)	1112
EcoO65I	GGTNACC	1 cut(s)	696
EcoRII	CCWGG	2 cut(s)	1029, 1473
EcoRV	GATATC	1 cut(s)	153
EcoT14I	CCWWGG	3 cut(s)	969, 1666, 2339
ErhI	CCWWGG	3 cut(s)	969, 1666, 2339
FalI	AAGNNNNNCTT	2 cut(s)	1092, 1124
FaqI	GGGAC	2 cut(s)	349, 2124
FauNDI	CATATG	1 cut(s)	2035
FbaI	TGATCA	2 cut(s)	498, 625
FblI	GTMKAC	1 cut(s)	1160
Fnu4HI	GCNGC	9 cut(s)	120, 919, 1075, 1201, 1433, 1436, 1457, 1709, 2051
FokI	GGATG	6 cut(s)	293, 304, 368, 1670, 1835, 2324
Fsp4HI	GCNGC	9 cut(s)	120, 919, 1075, 1201, 1433, 1436, 1457, 1709, 2051
FspBI	CTAG	7 cut(s)	543, 719, 929, 1631, 1799, 1895, 1934
FspI	TGCGCA	1 cut(s)	1810
GlaI	GCGC	1 cut(s)	1810
GluI	GCNGC	9 cut(s)	120, 919, 1075, 1201, 1433, 1436, 1457, 1709, 2051
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	5 cut(s)	322, 1550, 1725, 2173, 2338
HapII	CCGG	2 cut(s)	470, 508
HgaI	GACGC	1 cut(s)	1191
HhaI	GCGC	1 cut(s)	1811
Hin1I	GRCGYC	1 cut(s)	1183
Hin6I	GCGC	1 cut(s)	1809
HinP1I	GCGC	1 cut(s)	1809
HincII	GTYRAC	2 cut(s)	138, 2245
HindII	GTYRAC	2 cut(s)	138, 2245
HindIII	AAGCTT	3 cut(s)	1322, 1523, 2256
HinfI	GANTC	9 cut(s)	74, 362, 828, 1124, 1157, 1793, 1862, 2019, 2205
HpaII	CCGG	2 cut(s)	470, 508
HphI	GGTGA	3 cut(s)	232, 1438, 2169
Hpy166II	GTNNAC	5 cut(s)	138, 1051, 1161, 2045, 2245
Hpy188III	TCNNGA	9 cut(s)	381, 581, 899, 1085, 1582, 1688, 1799, 1895, 2202
Hpy8I	GTNNAC	5 cut(s)	138, 1051, 1161, 2045, 2245
Hpy99I	CGWCG	1 cut(s)	1185
HpyAV	CCTTC	8 cut(s)	686, 847, 944, 1324, 1879, 1997, 2182, 2184
HpyCH4III	ACNGT	7 cut(s)	256, 264, 654, 1239, 1488, 1842, 2370
HpyCH4IV	ACGT	3 cut(s)	1414, 1594, 2266
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1522, 1636, 1763, 1815
HpySE526I	ACGT	3 cut(s)	1414, 1594, 2266
Hsp92I	GRCGYC	1 cut(s)	1183
HspAI	GCGC	1 cut(s)	1809
Ksp22I	TGATCA	2 cut(s)	498, 625
Kzo9I	GATC	7 cut(s)	498, 625, 1017, 1477, 1674, 1972, 2221
LguI	GCTCTTC	1 cut(s)	732
LmnI	GCTCC	3 cut(s)	116, 1357, 2011
Lsp1109I	GCAGC	9 cut(s)	131, 905, 1061, 1212, 1419, 1422, 1443, 1720, 2037
LweI	GCATC	9 cut(s)	131, 337, 1201, 1239, 1339, 1648, 1813, 1900, 1939
MaeI	CTAG	7 cut(s)	543, 719, 929, 1631, 1799, 1895, 1934
MaeII	ACGT	3 cut(s)	1414, 1594, 2266
MaeIII	GTNAC	8 cut(s)	258, 696, 964, 1136, 1559, 1902, 2305, 2324
MalI	GATC	7 cut(s)	500, 627, 1019, 1479, 1676, 1974, 2223
MboI	GATC	7 cut(s)	498, 625, 1017, 1477, 1674, 1972, 2221
MboII	GAAGA	9 cut(s)	55, 501, 719, 988, 1163, 1358, 1615, 1757, 2141
MfeI	CAATTG	3 cut(s)	215, 629, 708
MflI	RGATCY	2 cut(s)	1477, 2221
MhlI	GDGCHC	2 cut(s)	231, 727
MluI	ACGCGT	1 cut(s)	140
MlyI	GAGTC	2 cut(s)	371, 1166
MmeI	TCCRAC	6 cut(s)	636, 774, 1196, 1892, 1989, 2233
MroXI	GAANNNNTTC	1 cut(s)	1866
MslI	CAYNNNNRTG	1 cut(s)	1656
MspA1I	CMGCKG	2 cut(s)	1711, 2050
MspCI	CTTAAG	2 cut(s)	1405, 1529
MspI	CCGG	2 cut(s)	470, 508
MspR9I	CCNGG	3 cut(s)	508, 1031, 1475
MunI	CAATTG	3 cut(s)	215, 629, 708
MvaI	CCWGG	2 cut(s)	1031, 1475
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	4 cut(s)	1522, 1636, 1763, 1815
NciI	CCSGG	1 cut(s)	508
NcoI	CCATGG	1 cut(s)	1666
NdeI	CATATG	1 cut(s)	2035
NdeII	GATC	7 cut(s)	498, 625, 1017, 1477, 1674, 1972, 2221
NheI	GCTAGC	1 cut(s)	1630
NmeAIII	GCCGAG	1 cut(s)	1103
NmuCI	GTSAC	4 cut(s)	258, 964, 1136, 1559
NsbI	TGCGCA	1 cut(s)	1810
NspI	RCATGY	4 cut(s)	464, 1144, 2251, 2306
PagI	TCATGA	2 cut(s)	1084, 1581
PceI	AGGCCT	1 cut(s)	1725
PciI	ACATGT	1 cut(s)	1140
PciSI	GCTCTTC	1 cut(s)	732
PdmI	GAANNNNTTC	1 cut(s)	1866
PfeI	GAWTC	7 cut(s)	74, 828, 1124, 1793, 1862, 2019, 2205
PflMI	CCANNNNNTGG	1 cut(s)	2345
PkrI	GCNGC	9 cut(s)	121, 920, 1076, 1202, 1434, 1437, 1458, 1710, 2052
PleI	GAGTC	2 cut(s)	370, 1165
PpsI	GAGTC	2 cut(s)	370, 1165
Ppu21I	YACGTR	1 cut(s)	1415
PscI	ACATGT	1 cut(s)	1140
Psp6I	CCWGG	2 cut(s)	1029, 1473
PspEI	GGTNACC	1 cut(s)	696
PspGI	CCWGG	2 cut(s)	1029, 1473
PspPI	GGNCC	2 cut(s)	2171, 2336
PsrI	GAACNNNNNNTAC	4 cut(s)	450, 482, 2298, 2330
PstNI	CAGNNNCTG	1 cut(s)	1074
PsuI	RGATCY	2 cut(s)	1477, 2221
PvuII	CAGCTG	2 cut(s)	1711, 2050
RsaI	GTAC	7 cut(s)	108, 773, 1289, 1403, 1839, 1844, 2046
RsaNI	GTAC	7 cut(s)	107, 772, 1288, 1402, 1838, 1843, 2045
RseI	CAYNNNNRTG	1 cut(s)	1656
SapI	GCTCTTC	1 cut(s)	732
SatI	GCNGC	9 cut(s)	120, 919, 1075, 1201, 1433, 1436, 1457, 1709, 2051
Sau3AI	GATC	7 cut(s)	498, 625, 1017, 1477, 1674, 1972, 2221
Sau96I	GGNCC	2 cut(s)	2171, 2336
ScaI	AGTACT	1 cut(s)	1289
SchI	GAGTC	2 cut(s)	371, 1166
ScrFI	CCNGG	3 cut(s)	508, 1031, 1475
SduI	GDGCHC	2 cut(s)	231, 727
SfaNI	GCATC	9 cut(s)	131, 337, 1201, 1239, 1339, 1648, 1813, 1900, 1939
SfcI	CTRYAG	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	1656
SmlI	CTYRAG	5 cut(s)	814, 1396, 1405, 1529, 2215
SmoI	CTYRAG	5 cut(s)	814, 1396, 1405, 1529, 2215
SnaBI	TACGTA	1 cut(s)	1415
SpeI	ACTAGT	1 cut(s)	928
SseBI	AGGCCT	1 cut(s)	1725
SsiI	CCGC	1 cut(s)	486
SspI	AATATT	1 cut(s)	389
SspMI	CTAG	7 cut(s)	543, 719, 929, 1631, 1799, 1895, 1934
StuI	AGGCCT	1 cut(s)	1725
StyD4I	CCNGG	3 cut(s)	506, 1029, 1473
StyI	CCWWGG	3 cut(s)	969, 1666, 2339
TaaI	ACNGT	7 cut(s)	256, 264, 654, 1239, 1488, 1842, 2370
TaiI	ACGT	3 cut(s)	1417, 1597, 2269
TaqI	TCGA	6 cut(s)	33, 420, 1127, 1180, 1233, 1833
TatI	WGTACW	6 cut(s)	106, 771, 1287, 1837, 1842, 2044
TfiI	GAWTC	7 cut(s)	74, 828, 1124, 1793, 1862, 2019, 2205
TscAI	CASTG	5 cut(s)	162, 261, 1315, 2127, 2373
TseFI	GTSAC	4 cut(s)	258, 964, 1136, 1559
TseI	GCWGC	9 cut(s)	119, 918, 1074, 1200, 1432, 1435, 1456, 1708, 2050
Tsp45I	GTSAC	4 cut(s)	258, 964, 1136, 1559
TspGWI	ACGGA	2 cut(s)	1238, 2324
TspRI	CASTG	5 cut(s)	162, 261, 1315, 2127, 2373
Van91I	CCANNNNNTGG	1 cut(s)	2345
Vha464I	CTTAAG	2 cut(s)	1405, 1529
XagI	CCTNNNNNAGG	1 cut(s)	1112
XapI	RAATTY	3 cut(s)	1462, 1732, 2116
XbaI	TCTAGA	2 cut(s)	1798, 1894
XceI	RCATGY	4 cut(s)	464, 1144, 2251, 2306
XcmI	CCANNNNNNNNNTGG	1 cut(s)	588
XmiI	GTMKAC	1 cut(s)	1160
XmnI	GAANNNNTTC	1 cut(s)	1866
XspI	CTAG	7 cut(s)	543, 719, 929, 1631, 1799, 1895, 1934
ZrmI	AGTACT	1 cut(s)	1289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.