Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Forward (+)

22254316 .. 22255685

Gene Structure 1370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G012220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCACAGTCCTGTTGATATCATTGGTGGGCTTGCTGTTGGTTGGCTGATCCTTTCCTTTTGGCTTACTGTTCATGAATATGTCGATAGTTTTGTAGTCTCAGGACAAAATGGATCGATGCTGAAGAAAGGAGTTGAAGAAGGAAGATGGACGGAGAAGTTTGTTTCTCGTGTTCAATTCAGTGGAGACCTTGTTACTGCATCTCCAGACGTTTATCAAGCAAGTCTAGGGGCAGACTCAGAATTTCTAGTGTTAGCATCTGATGGTTTATGGGATTACATAAACAGTTCAGATGCAGTTTCTTTTGTAAGGAATCAGTTTCGACAACATGGAGATGTCCAGCTAGCTTGTTATGCGCTTGCTGAAGCTGCTCTGGCAACAACTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

129

Amino Acids

14.08

Weight (kDa)

4.52

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	63 - 127	3.2e-15	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	43, 121
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	2 cut(s)	143, 384
AgsI	TTSAA	2 cut(s)	137, 176
AluBI	AGCT	3 cut(s)	343, 347, 368
AluI	AGCT	3 cut(s)	343, 347, 368
Alw26I	GTCTC	2 cut(s)	103, 180
AlwI	GGATC	2 cut(s)	43, 121
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	358
AsuNHI	GCTAGC	1 cut(s)	343
BauI	CACGAG	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	141, 257
BcoDI	GTCTC	2 cut(s)	103, 180
BfaI	CTAG	3 cut(s)	227, 248, 344
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
BmsI	GCATC	4 cut(s)	108, 209, 266, 283
BmtI	GCTAGC	1 cut(s)	347
BpmI	CTGGAG	1 cut(s)	189
Bsa29I	ATCGAT	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	180
BsaXI	ACNNNNNCTCC	4 cut(s)	177, 187, 207, 217
BseCI	ATCGAT	1 cut(s)	116
BseMII	CTCAG	2 cut(s)	114, 252
BseXI	GCAGC	1 cut(s)	355
BshVI	ATCGAT	1 cut(s)	116
BsmAI	GTCTC	2 cut(s)	103, 180
Bso31I	GGTCTC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	48, 113
BspCNI	CTCAG	2 cut(s)	113, 251
BspDI	ATCGAT	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	347
BspPI	GGATC	2 cut(s)	43, 121
BspTNI	GGTCTC	1 cut(s)	180
BssMI	GATC	2 cut(s)	48, 113
BssSI	CACGAG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	168
Bst4CI	ACNGT	3 cut(s)	8, 70, 287
BstC8I	GCNNGC	3 cut(s)	33, 345, 360
BstDEI	CTNAG	2 cut(s)	100, 238
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	2 cut(s)	51, 116
BstMAI	GTCTC	2 cut(s)	103, 180
BstMBI	GATC	2 cut(s)	48, 113
BstMWI	GCNNNNNNNGC	3 cut(s)	353, 368, 374
BstV1I	GCAGC	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	116
BsuTUI	ATCGAT	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	3 cut(s)	33, 345, 360
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	116
CviAII	CATG	2 cut(s)	74, 329
CviJI	RGCY	6 cut(s)	31, 46, 64, 343, 347, 368
CviKI_1	RGCY	6 cut(s)	31, 46, 64, 343, 347, 368
DdeI	CTNAG	2 cut(s)	100, 238
DpnI	GATC	2 cut(s)	50, 115
DpnII	GATC	2 cut(s)	48, 113
Eco31I	GGTCTC	1 cut(s)	180
Eco32I	GATATC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	143, 384
EcoRV	GATATC	1 cut(s)	19
FaeI	CATG	2 cut(s)	77, 332
FaiI	YATR	6 cut(s)	75, 81, 271, 281, 330, 354
FatI	CATG	2 cut(s)	73, 328
Fnu4HI	GCNGC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	3 cut(s)	227, 248, 344
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	189
HhaI	GCGC	1 cut(s)	358
Hin1II	CATG	2 cut(s)	77, 332
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	2 cut(s)	236, 313
Hpy188I	TCNGA	3 cut(s)	241, 262, 292
Hpy188III	TCNNGA	3 cut(s)	74, 102, 206
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	3 cut(s)	8, 70, 287
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	3 cut(s)	4, 200, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	353, 368, 374
HpyF3I	CTNAG	2 cut(s)	100, 238
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	2 cut(s)	77, 332
HspAI	GCGC	1 cut(s)	356
Kzo9I	GATC	2 cut(s)	48, 113
LpnPI	CCDG	5 cut(s)	24, 87, 219, 353, 359
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	4 cut(s)	108, 209, 266, 283
MaeI	CTAG	3 cut(s)	227, 248, 344
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	2 cut(s)	50, 115
MboI	GATC	2 cut(s)	48, 113
MboII	GAAGA	3 cut(s)	136, 149, 156
MluCI	AATT	3 cut(s)	176, 242, 385
MlyI	GAGTC	1 cut(s)	230
MslI	CAYNNNNRTG	2 cut(s)	78, 333
MwoI	GCNNNNNNNGC	3 cut(s)	353, 368, 374
NdeII	GATC	2 cut(s)	48, 113
NheI	GCTAGC	1 cut(s)	343
NlaIII	CATG	2 cut(s)	77, 332
PagI	TCATGA	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
RseI	CAYNNNNRTG	2 cut(s)	78, 333
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	2 cut(s)	48, 113
SchI	GAGTC	1 cut(s)	230
SetI	ASST	5 cut(s)	192, 213, 345, 349, 370
SfaNI	GCATC	4 cut(s)	108, 209, 266, 283
SmiMI	CAYNNNNRTG	2 cut(s)	78, 333
Sse9I	AATT	3 cut(s)	176, 242, 385
SspMI	CTAG	3 cut(s)	227, 248, 344
TaaI	ACNGT	3 cut(s)	8, 70, 287
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	84, 116, 322
TasI	AATT	3 cut(s)	176, 242, 385
TfiI	GAWTC	1 cut(s)	313
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	62, 90
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	187
XapI	RAATTY	1 cut(s)	242
XspI	CTAG	3 cut(s)	227, 248, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.