Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002125

Physical Location & Seq

Genomic Coordinates Forward (+)

40029129 .. 40029822

Gene Structure 694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG182200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCTGAAGAAAGGAGTTGAAGAAGGAAGATGGAGGGAGAAATTTGTTTCTCGTGTTCAATTTAGTGGAGACCTTGTTACTGCATCTCCAGACGTTTATCAAGCAAGTCTAGGGGCAGACTCAGAATTTCTAGTGTTAGCATCTGATGGTTTATGGGATTACATAAATAGTTCAGATACAGTTTCTTTTGTAAGGAATCAGCTTCGACAACATGGAGATGTCCAGTATATATGGCCTACACATTTGTATTTGGAAAAGTACATTGATCCCAGAACAGTGCTTAACTACAAATACTTTCTGTTTCTGATTTCAGCTAGCTTGTTATGCGCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009767 GO:0009987 GO:0010109 GO:0015979 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019222 GO:0019684 GO:0022900 GO:0031323 GO:0031974 GO:0031981 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055114 GO:0065007 GO:0070013 GO:0080005

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

PP2C

Protein Analysis

111

Amino Acids

12.79

Weight (kDa)

5.57

Isoelectric Point (pI)

29.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	24 - 74	6.5e-13	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002125)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27800 AT4G27800 AT4G27800
fragaria_vesca	FvH4_7g32030 FvH4_7g32030 FvH4_7g32030 FvH4_7g32030
malus_domestica	MD01G1223200.v1.1 MD07G1293900.v1.1
prunus_persica	Prupe.2G313700_v2.0.a1
pyrus_communis	pycom01g23250 pycom07g26670
rosa_chinensis	RchiOBHm_Chr1g0381641 RchiOBHm_Chr3g0453351 RchiOBHm_Chr5g0046991
rosa_laevigata	RLG00000026218
rosa_multiflora	Rmu_sc0001912.1_g000016 Rmu_sc0003181.1_g000017 Rmu_sc0003181.1_g000018 Rmu_sc0010385.1_g000007 Rmu_sc0022590.1_g000002 Rmu_sc0026037.1_g000002 Rmu_sc0034099.1_g000001
rosa_roxburghii	Rroxscaffold_3G00223370 Rroxscaffold_4G00278560
rosa_rugosa	Rorug01G0430100 Rorug01G0430200 Rorug03G0259100 Rorug03G0265500 Rorug04G0148900
rosa_samantha	Rh1AG157900 Rh1AG197200 Rh1AG340200 Rh1AG453300 Rh1BG410400 Rh1CG147500 Rh1CG182200 Rh1CG424900 Rh1DG442100 Rh3AG297400 Rh5BG473100 Rh5CG495700
rosa_wichuraiana	Rw1G039540 Rw6G012220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	260
AcsI	RAATTY	2 cut(s)	41, 125
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	20, 59
AluBI	AGCT	3 cut(s)	202, 314, 318
AluI	AGCT	3 cut(s)	202, 314, 318
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	2 cut(s)	41, 125
AspLEI	GCGC	1 cut(s)	329
AsuNHI	GCTAGC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	51
BccI	CCATC	2 cut(s)	24, 140
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	3 cut(s)	110, 131, 315
BmsI	GCATC	2 cut(s)	92, 149
BmtI	GCTAGC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	63
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 70, 90, 100
Bse1I	ACTGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	223
BshFI	GGCC	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	235
Bso31I	GGTCTC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	134
BspOI	GCTAGC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	63
BsrI	ACTGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	265
BssSI	CACGAG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	181, 277
BstC8I	GCNNGC	2 cut(s)	316, 331
BstDEI	CTNAG	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	329
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	316, 331
CfoI	GCGC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	4 cut(s)	202, 235, 314, 318
CviKI_1	RGCY	4 cut(s)	202, 235, 314, 318
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	1 cut(s)	121
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eco31I	GGTCTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	26
FaeI	CATG	1 cut(s)	215
FaiI	YATR	7 cut(s)	154, 164, 213, 228, 230, 232, 325
FatI	CATG	1 cut(s)	211
FspBI	CTAG	3 cut(s)	110, 131, 315
GlaI	GCGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	327
HinP1I	GCGC	1 cut(s)	327
HinfI	GANTC	2 cut(s)	119, 196
Hpy188I	TCNGA	4 cut(s)	124, 145, 175, 306
Hpy188III	TCNNGA	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	2 cut(s)	181, 277
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	265
LpnPI	CCDG	3 cut(s)	102, 236, 283
LweI	GCATC	2 cut(s)	92, 149
MaeI	CTAG	3 cut(s)	110, 131, 315
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	3 cut(s)	19, 32, 39
MluCI	AATT	3 cut(s)	41, 59, 125
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	216
MwoI	GCNNNNNNNGC	1 cut(s)	324
NdeII	GATC	1 cut(s)	265
NheI	GCTAGC	1 cut(s)	314
NlaIII	CATG	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	282
Sau3AI	GATC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	113
SetI	ASST	5 cut(s)	75, 96, 204, 316, 320
SfaNI	GCATC	2 cut(s)	92, 149
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	3 cut(s)	41, 59, 125
SspMI	CTAG	3 cut(s)	110, 131, 315
TaaI	ACNGT	2 cut(s)	181, 277
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	205
TasI	AATT	3 cut(s)	41, 59, 125
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	282
TspRI	CASTG	1 cut(s)	282
XapI	RAATTY	2 cut(s)	41, 125
XspI	CTAG	3 cut(s)	110, 131, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.