Rorug03G0259100

Protein phosphatase 2C 57-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
24898171 .. 24919798
21628 bp
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UTR
Exon/CDS
Intron
Rorug03G0259100.1

Sequence Viewer

Length: 291 bp
ATGAAAGAGTATGGTGTCACAGAGTCGTGGACATATTTGTACAAGATAGCTGGGTTTCAAGATCGTATATATGGTTTCAAAAGGTGTGGGGAAGTTGTTCTGAGTGACGAAAATAATCATGGTCAGTTAAGAAAGATTTCGCTGGATCCTAAGAGCAAACAAGTTCAAGTTTTCGGAAATAAGGATTATACTTACTACTTCATGGATTCTTTTGTAGAGAGTCTCATCTTGCTTGACCACGTCAATGCCATTTCGTACCAACGAGCAAGGAAGAAAAAAATGAGGCGGTGA

Protein Analysis

96

Amino Acids

11.44

Weight (kDa)

9.49

Isoelectric Point (pI)

28.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 286
AclWI GGATC 2 cut(s) 140, 153
AfaI GTAC 2 cut(s) 41, 257
AgsI TTSAA 3 cut(s) 59, 79, 167
AjiI CACGTC 1 cut(s) 241
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 2 cut(s) 140, 153
Asp700I GAANNNNTTC 2 cut(s) 96, 136
BamHI GGATCC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 147
BseMII CTCAG 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 227
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 2 cut(s) 61, 145
BspACI CCGC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 2 cut(s) 140, 153
BsrGI TGTACA 1 cut(s) 39
BssMI GATC 2 cut(s) 61, 145
BstAUI TGTACA 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 101, 150
BstKTI GATC 2 cut(s) 64, 148
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 61, 145
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BtrI CACGTC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 40, 256
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 2 cut(s) 119, 202
CviJI RGCY 1 cut(s) 50
CviKI_1 RGCY 1 cut(s) 50
CviQI GTAC 2 cut(s) 40, 256
DdeI CTNAG 2 cut(s) 101, 150
DpnI GATC 2 cut(s) 63, 147
DpnII GATC 2 cut(s) 61, 145
FaeI CATG 2 cut(s) 122, 205
FaiI YATR 8 cut(s) 12, 34, 68, 70, 72, 120, 189, 203
FatI CATG 2 cut(s) 118, 201
GsaI CCCAGC 1 cut(s) 54
Hin1II CATG 2 cut(s) 122, 205
HinfI GANTC 3 cut(s) 23, 206, 220
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 2 cut(s) 102, 176
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 30
HpyCH4IV ACGT 1 cut(s) 240
HpyF3I CTNAG 2 cut(s) 101, 150
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 2 cut(s) 122, 205
Kzo9I GATC 2 cut(s) 61, 145
LpnPI CCDG 2 cut(s) 36, 128
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 2 cut(s) 16, 104
MalI GATC 2 cut(s) 63, 147
MboI GATC 2 cut(s) 61, 145
MboII GAAGA 1 cut(s) 283
MflI RGATCY 1 cut(s) 145
MlyI GAGTC 2 cut(s) 32, 229
MnlI CCTC 1 cut(s) 276
MroXI GAANNNNTTC 2 cut(s) 96, 136
MseI TTAA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 243
NdeII GATC 2 cut(s) 61, 145
NlaIII CATG 2 cut(s) 122, 205
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 2 cut(s) 16, 104
PdmI GAANNNNTTC 2 cut(s) 96, 136
PfeI GAWTC 1 cut(s) 206
PflFI GACNNNGTC 1 cut(s) 239
PleI GAGTC 2 cut(s) 31, 228
PpsI GAGTC 2 cut(s) 31, 228
PspFI CCCAGC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 147
PsuI RGATCY 1 cut(s) 145
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 2 cut(s) 41, 257
RsaNI GTAC 2 cut(s) 40, 256
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 1 cut(s) 128
Sau3AI GATC 2 cut(s) 61, 145
SchI GAGTC 2 cut(s) 32, 229
SetI ASST 3 cut(s) 52, 86, 243
SmiMI CAYNNNNRTG 1 cut(s) 243
SsiI CCGC 1 cut(s) 286
TaiI ACGT 1 cut(s) 243
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 128
Tru9I TTAA 1 cut(s) 128
TseFI GTSAC 2 cut(s) 16, 104
Tsp45I GTSAC 2 cut(s) 16, 104
TspDTI ATGAA 2 cut(s) 17, 190
Tth111I GACNNNGTC 1 cut(s) 239
XmnI GAANNNNTTC 2 cut(s) 96, 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.