AT4G27800

phosphatase 2C

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
13851777 .. 13854237
2461 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G27800.1

Sequence Viewer

Length: 1167 bp
ATGGCGCTTCTGAGGCCGCATCTTCATCGCTTTCACTCCAACACTCTCCGCCACTCAGCCTATCCTTCCGCCGACGCTGGCGGTGGCCTTGTCGTCTATCCCACGTATGGTCGTCACCGTTGCTCCGCGATTGCGATCGACGCTCCGTCGTCTCTGACTGGCGTGACGCCGATTCGTTGGGGTTACACGAGTGTTCAAGGATTCCGAGATGAGATGGAAGACGACATCGTAATCCGTTCTGATGCTGTCGATAGCTTCTCCTACGCAGCGGTCTTCGACGGCCACGCTGGGTCGTCCTCTGTCAAATTCCTCAGGGAAGAGCTGTATAAAGAGTGTGTTGGTGCATTGCAAGCTGGATCGTTGTTGAATGGAGGCGATTTCGCAGCAATCAAGGAAGCTTTGATTAAGGCCTTTGAAAGCGTTGACCGCAATTTGCTCAAATGGCTAGAAGCTAACGGTGACGAAGAAGATGAATCAGGTTCAACAGCCACTGTAATGATCATCAGAAATGATGTTTCCTTCATTGCTCATATTGGTGATTCGTGTGCAGTCTTATCTCGATCTGGGCAAATCGAGGAATTGACTGATTATCACCGTCCATATGGAAGCAGTAGAGCAGCTATTCAGGAAGTGAAAAGGGTCAAAGAAGCAGGTGGATGGATTGTCAATGGAAGGATTTGTGGAGACATAGCTGTATCTCGTGCTTTTGGTGACATCCGGTTTAAGACAAAGAAGAATGATATGTTAAAGAAGGGTGTTGATGAAGGAAGATGGTCCGAGAAGTTTGTTTCCAGAATCGAGTTTAAAGGGGACATGGTTGTGGCGACTCCAGATATCTTCCAAGTACCTCTGACATCTGATGTGGAATTCATTATTTTAGCTTCTGATGGATTATGGGACTACATGAAGAGCTCAGATGTGGTTAGTTATGTTAGGGATCAGCTCCGGAAACATGGGAATGTGCAGCTTGCTTGTGAATCTCTTGCGCAAGTAGCTTTGGACCGGCGATCTCAGGACAACATTAGCATCATTATTGCTGATCTAGGAAGAACAGAGTGGAAGAATCTCCCCGCGCAGCGACAAAACGTAGTGGTTGAACTGGTTCAGGCTGCAACGACTATCGGTTTAGTTACTGTTGGCATATGGATGTCTTCACATCTATCTTAA

Protein Analysis

388

Amino Acids

42.72

Weight (kDa)

5.73

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 61 - 341 6.1e-55 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 641
Acc16I TGCGCA 1 cut(s) 987
Acc36I ACCTGC 1 cut(s) 641
AccII CGCG 2 cut(s) 128, 1073
AccIII TCCGGA 1 cut(s) 945
AciI CCGC 8 cut(s) 17, 49, 69, 81, 126, 269, 427, 1071
AclWI GGATC 2 cut(s) 364, 945
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 2 cut(s) 305, 866
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 1 cut(s) 846
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 5 cut(s) 197, 367, 416, 483, 1097
AhdI GACNNNNNGTC 1 cut(s) 145
Alw21I GWGCWC 1 cut(s) 914
Alw26I GTCTC 2 cut(s) 156, 678
AlwI GGATC 2 cut(s) 364, 945
AlwNI CAGNNNCTG 1 cut(s) 491
Aor13HI TCCGGA 1 cut(s) 945
AoxI GGCC 4 cut(s) 14, 85, 280, 408
ApeKI GCWGC 6 cut(s) 266, 383, 617, 964, 1075, 1109
ApoI RAATTY 2 cut(s) 305, 866
Asp700I GAANNNNTTC 1 cut(s) 1101
AspLEI GCGC 3 cut(s) 7, 988, 1075
AspS9I GGNCC 2 cut(s) 774, 1000
AsuHPI GGTGA 5 cut(s) 107, 470, 548, 584, 722
AvaII GGWCC 2 cut(s) 774, 1000
AxyI CCTNAGG 1 cut(s) 311
BanII GRGCYC 1 cut(s) 914
BauI CACGAG 2 cut(s) 187, 699
BbsI GAAGAC 3 cut(s) 225, 265, 1143
Bbv12I GWGCWC 1 cut(s) 914
BbvI GCAGC 6 cut(s) 278, 395, 629, 976, 1087, 1096
BccI CCATC 4 cut(s) 208, 651, 765, 881
BceAI ACGGC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 156, 678
BfaI CTAG 2 cut(s) 446, 1043
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 641
BisI GCNGC 7 cut(s) 17, 267, 384, 618, 965, 1076, 1110
BlsI GCNGC 7 cut(s) 18, 268, 385, 619, 966, 1077, 1111
Bme18I GGWCC 2 cut(s) 774, 1000
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 774, 1000
BmsI GCATC 3 cut(s) 28, 232, 1035
BpiI GAAGAC 3 cut(s) 225, 265, 1143
BpmI CTGGAG 1 cut(s) 813
BsaAI YACGTR 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 167
BsaWI WCCGGW 2 cut(s) 717, 945
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 1002
Bse1I ACTGG 2 cut(s) 163, 1104
Bse21I CCTNAGG 1 cut(s) 311
Bse3DI GCAATG 2 cut(s) 344, 522
Bse8I GATNNNNATC 1 cut(s) 134
BseAI TCCGGA 1 cut(s) 945
BseGI GGATG 3 cut(s) 662, 714, 1152
BseJI GATNNNNATC 1 cut(s) 134
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 2 cut(s) 344, 522
BseMII CTCAG 4 cut(s) 69, 325, 927, 1025
BseNI ACTGG 2 cut(s) 163, 1104
BseXI GCAGC 6 cut(s) 278, 395, 629, 976, 1087, 1096
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 2 cut(s) 567, 983
Bsh1236I CGCG 2 cut(s) 128, 1073
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 4 cut(s) 16, 87, 282, 410
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 914
BsiSI CCGG 3 cut(s) 718, 946, 1003
BslFI GGGAC 2 cut(s) 824, 911
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 156, 678
BsmBI CGTCTC 1 cut(s) 156
BsmFI GGGAC 2 cut(s) 824, 911
BsnI GGCC 4 cut(s) 16, 87, 282, 410
Bsp1286I GDGCHC 1 cut(s) 914
Bsp13I TCCGGA 1 cut(s) 945
Bsp143I GATC 7 cut(s) 135, 356, 498, 560, 937, 1007, 1039
BspACI CCGC 8 cut(s) 17, 49, 69, 81, 126, 269, 427, 1071
BspANI GGCC 4 cut(s) 16, 87, 282, 410
BspCNI CTCAG 4 cut(s) 68, 324, 926, 1024
BspEI TCCGGA 1 cut(s) 945
BspFNI CGCG 2 cut(s) 128, 1073
BspMI ACCTGC 1 cut(s) 641
BspPI GGATC 2 cut(s) 364, 945
BspQI GCTCTTC 2 cut(s) 312, 902
BsrDI GCAATG 2 cut(s) 344, 522
BsrFI RCCGGY 1 cut(s) 1002
BsrI ACTGG 2 cut(s) 163, 1104
BssAI RCCGGY 1 cut(s) 1002
BssMI GATC 7 cut(s) 135, 356, 498, 560, 937, 1007, 1039
BssNI GRCGYC 1 cut(s) 167
BssSI CACGAG 2 cut(s) 187, 699
Bst2BI CACGAG 2 cut(s) 187, 699
Bst4CI ACNGT 5 cut(s) 119, 458, 493, 596, 1135
Bst6I CTCTTC 2 cut(s) 312, 902
BstACI GRCGYC 1 cut(s) 167
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 3 cut(s) 79, 351, 969
BstDEI CTNAG 5 cut(s) 11, 55, 311, 913, 1011
BstF5I GGATG 3 cut(s) 662, 714, 1152
BstFNI CGCG 2 cut(s) 128, 1073
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 988, 1075
BstKTI GATC 7 cut(s) 138, 359, 501, 563, 940, 1010, 1042
BstMAI GTCTC 2 cut(s) 156, 678
BstMBI GATC 7 cut(s) 135, 356, 498, 560, 937, 1007, 1039
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 6 cut(s) 13, 140, 350, 426, 442, 992
BstUI CGCG 2 cut(s) 128, 1073
BstV1I GCAGC 6 cut(s) 278, 395, 629, 976, 1087, 1096
BstV2I GAAGAC 3 cut(s) 225, 265, 1143
Bsu36I CCTNAGG 1 cut(s) 311
BsuRI GGCC 4 cut(s) 16, 87, 282, 410
BtgZI GCGATG 1 cut(s) 11
BtsCI GGATG 3 cut(s) 662, 714, 1152
BtsIMutI CAGTG 1 cut(s) 489
BveI ACCTGC 1 cut(s) 641
Cac8I GCNNGC 3 cut(s) 79, 351, 969
CaiI CAGNNNCTG 1 cut(s) 491
CfoI GCGC 3 cut(s) 7, 988, 1075
Cfr10I RCCGGY 1 cut(s) 1002
Cfr13I GGNCC 2 cut(s) 774, 1000
CseI GACGC 3 cut(s) 83, 149, 175
Csp6I GTAC 1 cut(s) 845
CviAII CATG 3 cut(s) 814, 904, 953
CviQI GTAC 1 cut(s) 845
DdeI CTNAG 5 cut(s) 11, 55, 311, 913, 1011
DpnI GATC 7 cut(s) 137, 358, 500, 562, 939, 1009, 1041
DpnII GATC 7 cut(s) 135, 356, 498, 560, 937, 1007, 1039
DraI TTTAAA 1 cut(s) 805
DriI GACNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 2 cut(s) 312, 902
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 2 cut(s) 312, 902
EciI GGCGGA 2 cut(s) 38, 58
Ecl136II GAGCTC 1 cut(s) 912
Eco147I AGGCCT 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 914
Eco32I GATATC 1 cut(s) 835
Eco47I GGWCC 2 cut(s) 774, 1000
Eco53kI GAGCTC 1 cut(s) 912
Eco81I CCTNAGG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 912
EcoRI GAATTC 1 cut(s) 866
EcoRV GATATC 1 cut(s) 835
EcoT38I GRGCYC 1 cut(s) 914
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 3 cut(s) 817, 907, 956
FaqI GGGAC 2 cut(s) 824, 911
FatI CATG 3 cut(s) 813, 903, 952
FauI CCCGC 1 cut(s) 1078
FauNDI CATATG 2 cut(s) 601, 1142
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 7 cut(s) 17, 267, 384, 618, 965, 1076, 1110
FokI GGATG 3 cut(s) 669, 701, 1159
FriOI GRGCYC 1 cut(s) 914
Fsp4HI GCNGC 7 cut(s) 17, 267, 384, 618, 965, 1076, 1110
FspBI CTAG 2 cut(s) 446, 1043
FspI TGCGCA 1 cut(s) 987
GlaI GCGC 3 cut(s) 6, 987, 1074
GluI GCNGC 7 cut(s) 17, 267, 384, 618, 965, 1076, 1110
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 813
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 4 cut(s) 16, 87, 282, 410
HapII CCGG 3 cut(s) 718, 946, 1003
HgaI GACGC 3 cut(s) 83, 149, 175
HhaI GCGC 3 cut(s) 7, 988, 1075
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 3 cut(s) 817, 907, 956
Hin6I GCGC 3 cut(s) 5, 986, 1073
HinP1I GCGC 3 cut(s) 5, 986, 1073
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 8 cut(s) 172, 201, 473, 539, 795, 826, 977, 1063
HpaII CCGG 3 cut(s) 718, 946, 1003
HphI GGTGA 5 cut(s) 107, 470, 548, 584, 722
Hpy166II GTNNAC 1 cut(s) 424
Hpy188III TCNNGA 6 cut(s) 558, 626, 792, 830, 946, 1013
Hpy8I GTNNAC 1 cut(s) 424
Hpy99I CGWCG 4 cut(s) 77, 143, 151, 281
HpyAV CCTTC 5 cut(s) 75, 529, 666, 745, 758
HpyCH4III ACNGT 5 cut(s) 119, 458, 493, 596, 1135
HpyCH4IV ACGT 2 cut(s) 104, 1086
HpyCH4V TGCA 5 cut(s) 344, 349, 548, 964, 1112
HpyF10VI GCNNNNNNNGC 6 cut(s) 13, 140, 350, 426, 442, 992
HpyF3I CTNAG 5 cut(s) 11, 55, 311, 913, 1011
HpySE526I ACGT 2 cut(s) 104, 1086
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 3 cut(s) 817, 907, 956
HspAI GCGC 3 cut(s) 5, 986, 1073
Kpn2I TCCGGA 1 cut(s) 945
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 7 cut(s) 135, 356, 498, 560, 937, 1007, 1039
LguI GCTCTTC 2 cut(s) 312, 902
LmnI GCTCC 3 cut(s) 128, 148, 948
Lsp1109I GCAGC 6 cut(s) 278, 395, 629, 976, 1087, 1096
LweI GCATC 3 cut(s) 28, 232, 1035
MaeI CTAG 2 cut(s) 446, 1043
MaeII ACGT 2 cut(s) 104, 1086
MaeIII GTNAC 6 cut(s) 113, 163, 182, 458, 710, 1129
MalI GATC 7 cut(s) 137, 358, 500, 562, 939, 1009, 1041
MboI GATC 7 cut(s) 135, 356, 498, 560, 937, 1007, 1039
MhlI GDGCHC 1 cut(s) 914
MluCI AATT 4 cut(s) 305, 430, 578, 866
MlyI GAGTC 1 cut(s) 820
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 6 cut(s) 6, 307, 320, 365, 568, 858
MroI TCCGGA 1 cut(s) 945
MroXI GAANNNNTTC 1 cut(s) 1101
MseI TTAA 5 cut(s) 405, 723, 746, 804, 1165
MslI CAYNNNNRTG 5 cut(s) 494, 534, 818, 957, 1145
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 3 cut(s) 718, 946, 1003
MvnI CGCG 2 cut(s) 128, 1073
MwoI GCNNNNNNNGC 6 cut(s) 13, 140, 350, 426, 442, 992
NdeI CATATG 2 cut(s) 601, 1142
NdeII GATC 7 cut(s) 135, 356, 498, 560, 937, 1007, 1039
NlaIII CATG 3 cut(s) 817, 907, 956
NmuCI GTSAC 4 cut(s) 113, 163, 458, 710
NsbI TGCGCA 1 cut(s) 987
PaqCI CACCTGC 1 cut(s) 641
PceI AGGCCT 1 cut(s) 410
PciSI GCTCTTC 2 cut(s) 312, 902
PdmI GAANNNNTTC 1 cut(s) 1101
PfeI GAWTC 7 cut(s) 172, 201, 473, 539, 795, 977, 1063
PkrI GCNGC 7 cut(s) 18, 268, 385, 619, 966, 1077, 1111
Ple19I CGATCG 1 cut(s) 138
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
Ppu21I YACGTR 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 914
PspFI CCCAGC 1 cut(s) 287
PspPI GGNCC 2 cut(s) 774, 1000
PstNI CAGNNNCTG 1 cut(s) 491
PvuI CGATCG 1 cut(s) 138
RsaI GTAC 1 cut(s) 846
RsaNI GTAC 1 cut(s) 845
RseI CAYNNNNRTG 5 cut(s) 494, 534, 818, 957, 1145
SacI GAGCTC 1 cut(s) 914
SapI GCTCTTC 2 cut(s) 312, 902
SaqAI TTAA 5 cut(s) 405, 723, 746, 804, 1165
SatI GCNGC 7 cut(s) 17, 267, 384, 618, 965, 1076, 1110
Sau3AI GATC 7 cut(s) 135, 356, 498, 560, 937, 1007, 1039
Sau96I GGNCC 2 cut(s) 774, 1000
SchI GAGTC 1 cut(s) 820
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 3 cut(s) 28, 232, 1035
SinI GGWCC 2 cut(s) 774, 1000
SmiMI CAYNNNNRTG 5 cut(s) 494, 534, 818, 957, 1145
Sse9I AATT 4 cut(s) 305, 430, 578, 866
SseBI AGGCCT 1 cut(s) 410
SsiI CCGC 8 cut(s) 17, 49, 69, 81, 126, 269, 427, 1071
SspMI CTAG 2 cut(s) 446, 1043
SstI GAGCTC 1 cut(s) 914
StuI AGGCCT 1 cut(s) 410
TaaI ACNGT 5 cut(s) 119, 458, 493, 596, 1135
TaiI ACGT 2 cut(s) 107, 1089
TaqI TCGA 6 cut(s) 138, 249, 276, 559, 573, 798
TasI AATT 4 cut(s) 305, 430, 578, 866
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 7 cut(s) 172, 201, 473, 539, 795, 977, 1063
Tru1I TTAA 5 cut(s) 405, 723, 746, 804, 1165
Tru9I TTAA 5 cut(s) 405, 723, 746, 804, 1165
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 4 cut(s) 113, 163, 458, 710
TseI GCWGC 6 cut(s) 266, 383, 617, 964, 1075, 1109
Tsp45I GTSAC 4 cut(s) 113, 163, 458, 710
TspDTI ATGAA 6 cut(s) 14, 486, 511, 777, 859, 920
TspGWI ACGGA 2 cut(s) 135, 224
TspRI CASTG 1 cut(s) 496
VpaK11BI GGWCC 2 cut(s) 774, 1000
XapI RAATTY 2 cut(s) 305, 866
XmnI GAANNNNTTC 1 cut(s) 1101
XspI CTAG 2 cut(s) 446, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.