Rroxscaffold_4G00282980

65-kDa microtubule-associated protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
5060030 .. 5062237
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282980.1

Sequence Viewer

Length: 1209 bp
ATGTCTAATCTCCAAAGCGAGCAGCTTCTGCAAATGGAAACAACATGCGGGTCTCTTCTATATGAGCTTCAGATAATTTGGAATGAAGTTGGAGAGACGGACACTGATAGGGACAAGATGTTGCTTGAGCTTGAGCAGGAGTGCCTTGAAGTATACAGAAGAAAGGTTGATCAGGCTAATCGGAGTAGGGCACAGCTACGTCAGGCAATTGCTGACTCCGAAGCAGAACTTGCAGCAATCTGTTCTGCAATGGGGGAGCGACCAGTTCATATTAGGCAGTCTGATCAAAATGCTGGAAGCTTGAAGGAAGAACTCAGTAAAATAATTCCACAGCTGGAGGAAATGCAGAAGAGAAAAATTGAAAGAAAAAAATCAATTTCTAGAATTGTGGATGAAACTGATTTGTCTTTGAGAAGGCTTGAAGAATTGCACAGACAGCTCCATGCACTCCAAACAGAGAAGAGTGATAGGCTGAAGCAGATACAGGCCCATCTGGGTACATTGAACTCGCTTTGCTTAGTTCTTGGTATGGATTTCAAACAGACAATCAGTGAGGTTCATCCCAGTCTAGATAATTCTGAAGGATGTAAAGATATAAGTTTGGACTTAATTGAGCGATTGGCCACTGCAATAAAGAAATTGCGTGATGTTAAATTACAGAGAATGCAGAGGCTTCAAGATCTTGCAACCACCATGTTGGAGCTGTGGAATTTGATGGATACGCCAATCGAGGAGCAACAGATGTTTCAGAATATAACATGTAACATAGCTGCTTCAGAACATGAGATAACTGAGCCGGATGCGCTCTCCGTGGACTTCATCAATTATAAAACATCTAAGAATGTGTTTCTGAATGTCTGCACCATTCTTGCTTTTGCAGGAGTTGTGGACCCTTCTTGCGTATTGGACCAAATTGAGGTTCAGGTTGCAAAGGTTAAAGAGGAAGCTTTTAGCAGGAAAGACATACTTGAAAGAGTTGACAAATGGTTGTTTGCTTGTGATGAGGAGTGCTGGCTTGAGGAATATAACAGGGATGAAAACCGATATAATGCCGGCAGAGGAGCTCATCTTACTCTCAAGCGCGCTGAGAAAGCACGTGCTTTGGTTAACAAACTTCCAGGTACAGATTGCATTGATAGAATGCCTCCCTCTATCACAATGTTAAACTTTCCGGTATATGTAACTGTCACAGAATCACTTGCAGCTTAA

Protein Analysis

402

Amino Acids

46.05

Weight (kDa)

5.09

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAP65_ASE1 PF03999 18 - 275 5.6e-43 Microtubule associated protein (MAP65/ASE1 family)
MAP65_ASE1 PF03999 300 - 374 1.5e-19 Microtubule associated protein (MAP65/ASE1 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 828
AccI GTMKAC 1 cut(s) 153
AccII CGCG 1 cut(s) 1083
AciI CCGC 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 1 cut(s) 709
AcuI CTGAAG 4 cut(s) 53, 494, 600, 759
AcvI CACGTG 1 cut(s) 1097
AfaI GTAC 2 cut(s) 499, 1123
AfiI CCNNNNNNNGG 1 cut(s) 916
AflIII ACRYGT 1 cut(s) 758
AgsI TTSAA 8 cut(s) 149, 304, 362, 422, 505, 538, 677, 971
AjnI CCWGG 1 cut(s) 1117
AjuI GAANNNNNNNTTGG 2 cut(s) 903, 935
Alw21I GWGCWC 1 cut(s) 1066
Alw26I GTCTC 2 cut(s) 57, 89
AlwNI CAGNNNCTG 1 cut(s) 28
AoxI GGCC 2 cut(s) 486, 621
ApeKI GCWGC 4 cut(s) 22, 233, 770, 1202
ApoI RAATTY 1 cut(s) 709
AspLEI GCGC 3 cut(s) 805, 1083, 1085
AspS9I GGNCC 3 cut(s) 487, 889, 907
AvaII GGWCC 2 cut(s) 889, 907
BaeGI GKGCMC 1 cut(s) 193
BalI TGGCCA 1 cut(s) 623
BanII GRGCYC 1 cut(s) 1066
BbrPI CACGTG 1 cut(s) 1097
Bbv12I GWGCWC 1 cut(s) 1066
BbvI GCAGC 3 cut(s) 34, 245, 757
BccI CCATC 2 cut(s) 498, 709
BciT130I CCWGG 1 cut(s) 1119
BciVI GTATCC 1 cut(s) 712
BclI TGATCA 2 cut(s) 169, 283
BcoDI GTCTC 2 cut(s) 57, 89
BfaI CTAG 2 cut(s) 381, 569
BfuI GTATCC 1 cut(s) 712
BglII AGATCT 1 cut(s) 679
BisI GCNGC 4 cut(s) 23, 234, 771, 1203
BlsI GCNGC 4 cut(s) 24, 235, 772, 1204
Bme1390I CCNGG 1 cut(s) 1119
Bme18I GGWCC 2 cut(s) 889, 907
BmgT120I GGNCC 3 cut(s) 487, 889, 907
BmiI GGNNCC 1 cut(s) 891
BmrFI CCNGG 1 cut(s) 1119
BmrI ACTGGG 1 cut(s) 558
BmsI GCATC 1 cut(s) 790
BmuI ACTGGG 1 cut(s) 558
BpmI CTGGAG 1 cut(s) 356
BpuEI CTTGAG 4 cut(s) 146, 152, 1037, 1061
BsaAI YACGTR 1 cut(s) 1097
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 810
BsaWI WCCGGW 1 cut(s) 1171
Bsc4I CCNNNNNNNGG 1 cut(s) 916
Bse118I RCCGGY 1 cut(s) 1052
Bse1I ACTGG 2 cut(s) 263, 564
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 1119
BseDI CCNNGG 1 cut(s) 810
BseGI GGATG 5 cut(s) 397, 559, 590, 805, 1039
BseLI CCNNNNNNNGG 1 cut(s) 916
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 3 cut(s) 328, 783, 1077
BseNI ACTGG 2 cut(s) 263, 564
BsePI GCGCGC 1 cut(s) 1081
BseRI GAGGAG 3 cut(s) 746, 1019, 1074
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 3 cut(s) 34, 245, 757
BsgI GTGCAG 1 cut(s) 844
Bsh1236I CGCG 1 cut(s) 1083
BshFI GGCC 2 cut(s) 488, 623
BsiHKAI GWGCWC 1 cut(s) 1066
BsiSI CCGG 3 cut(s) 797, 1053, 1172
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 916
BsmAI GTCTC 2 cut(s) 57, 89
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 125
BsmI GAATGC 2 cut(s) 669, 1146
BsnI GGCC 2 cut(s) 488, 623
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 193, 1066
Bsp143I GATC 3 cut(s) 169, 283, 679
BspACI CCGC 1 cut(s) 48
BspANI GGCC 2 cut(s) 488, 623
BspCNI CTCAG 3 cut(s) 327, 784, 1078
BspFNI CGCG 1 cut(s) 1083
BspLI GGNNCC 1 cut(s) 891
BspTNI GGTCTC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 1052
BsrI ACTGG 2 cut(s) 263, 564
BssAI RCCGGY 1 cut(s) 1052
BssECI CCNNGG 1 cut(s) 810
BssHII GCGCGC 1 cut(s) 1081
BssMI GATC 3 cut(s) 169, 283, 679
BssNAI GTATAC 1 cut(s) 154
Bst1107I GTATAC 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 1119
Bst4CI ACNGT 1 cut(s) 1186
Bst6I CTCTTC 3 cut(s) 60, 344, 455
BstAPI GCANNNNNTGC 2 cut(s) 28, 230
BstBAI YACGTR 1 cut(s) 1097
BstC8I GCNNGC 4 cut(s) 20, 1013, 1054, 1083
BstDEI CTNAG 5 cut(s) 314, 517, 792, 837, 1086
BstDSI CCRYGG 1 cut(s) 810
BstF5I GGATG 5 cut(s) 397, 559, 590, 805, 1039
BstFNI CGCG 1 cut(s) 1083
BstHHI GCGC 3 cut(s) 805, 1083, 1085
BstKTI GATC 3 cut(s) 172, 286, 682
BstMAI GTCTC 2 cut(s) 57, 89
BstMBI GATC 3 cut(s) 169, 283, 679
BstMWI GCNNNNNNNGC 5 cut(s) 28, 230, 436, 802, 1091
BstNI CCWGG 1 cut(s) 1119
BstNSI RCATGY 2 cut(s) 48, 762
BstSCI CCNGG 1 cut(s) 1117
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 1 cut(s) 1083
BstV1I GCAGC 3 cut(s) 34, 245, 757
BstX2I RGATCY 1 cut(s) 679
BstXI CCANNNNNNTGG 1 cut(s) 697
BstYI RGATCY 1 cut(s) 679
BstZ17I GTATAC 1 cut(s) 154
BsuI GTATCC 1 cut(s) 712
BsuRI GGCC 2 cut(s) 488, 623
BtgI CCRYGG 1 cut(s) 810
BtsCI GGATG 5 cut(s) 397, 559, 590, 805, 1039
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 3 cut(s) 102, 556, 624
Cac8I GCNNGC 4 cut(s) 20, 1013, 1054, 1083
CaiI CAGNNNCTG 1 cut(s) 28
CfoI GCGC 3 cut(s) 805, 1083, 1085
Cfr10I RCCGGY 1 cut(s) 1052
Cfr13I GGNCC 3 cut(s) 487, 889, 907
Csp6I GTAC 2 cut(s) 498, 1122
CviAII CATG 5 cut(s) 45, 443, 694, 759, 782
CviQI GTAC 2 cut(s) 498, 1122
DdeI CTNAG 5 cut(s) 314, 517, 792, 837, 1086
DpnI GATC 3 cut(s) 171, 285, 681
DpnII GATC 3 cut(s) 169, 283, 679
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 3 cut(s) 60, 344, 455
EarI CTCTTC 3 cut(s) 60, 344, 455
Ecl136II GAGCTC 1 cut(s) 1064
Eco24I GRGCYC 1 cut(s) 1066
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 889, 907
Eco53kI GAGCTC 1 cut(s) 1064
Eco57I CTGAAG 4 cut(s) 53, 494, 600, 759
Eco72I CACGTG 1 cut(s) 1097
EcoICRI GAGCTC 1 cut(s) 1064
EcoRII CCWGG 1 cut(s) 1117
EcoT38I GRGCYC 1 cut(s) 1066
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 5 cut(s) 48, 446, 697, 762, 785
FalI AAGNNNNNCTT 4 cut(s) 213, 245, 951, 983
FaqI GGGAC 1 cut(s) 125
FatI CATG 5 cut(s) 44, 442, 693, 758, 781
FauI CCCGC 1 cut(s) 41
FbaI TGATCA 2 cut(s) 169, 283
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 4 cut(s) 23, 234, 771, 1203
FokI GGATG 5 cut(s) 404, 546, 597, 812, 1046
FriOI GRGCYC 1 cut(s) 1066
Fsp4HI GCNGC 4 cut(s) 23, 234, 771, 1203
FspBI CTAG 2 cut(s) 381, 569
GlaI GCGC 3 cut(s) 804, 1082, 1084
GluI GCNGC 4 cut(s) 23, 234, 771, 1203
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 2 cut(s) 488, 623
HapII CCGG 3 cut(s) 797, 1053, 1172
HhaI GCGC 3 cut(s) 805, 1083, 1085
Hin1II CATG 5 cut(s) 48, 446, 697, 762, 785
Hin6I GCGC 3 cut(s) 803, 1081, 1083
HinP1I GCGC 3 cut(s) 803, 1081, 1083
HincII GTYRAC 2 cut(s) 979, 1108
HindII GTYRAC 2 cut(s) 979, 1108
HindIII AAGCTT 2 cut(s) 298, 945
HinfI GANTC 2 cut(s) 215, 1193
HpaI GTTAAC 1 cut(s) 1108
HpaII CCGG 3 cut(s) 797, 1053, 1172
Hpy166II GTNNAC 5 cut(s) 154, 814, 889, 979, 1108
Hpy188I TCNGA 8 cut(s) 72, 183, 220, 283, 580, 750, 778, 852
Hpy188III TCNNGA 3 cut(s) 381, 569, 677
Hpy8I GTNNAC 5 cut(s) 154, 814, 889, 979, 1108
HpyAV CCTTC 4 cut(s) 298, 408, 575, 903
HpyCH4III ACNGT 1 cut(s) 1186
HpyCH4IV ACGT 2 cut(s) 199, 1096
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 230, 436, 802, 1091
HpyF3I CTNAG 5 cut(s) 314, 517, 792, 837, 1086
HpySE526I ACGT 2 cut(s) 199, 1096
Hsp92II CATG 5 cut(s) 48, 446, 697, 762, 785
HspAI GCGC 3 cut(s) 803, 1081, 1083
KroI GCCGGC 1 cut(s) 1052
KroNI GCCGGC 1 cut(s) 1054
Ksp22I TGATCA 2 cut(s) 169, 283
KspAI GTTAAC 1 cut(s) 1108
Kzo9I GATC 3 cut(s) 169, 283, 679
LmnI GCTCC 5 cut(s) 256, 444, 700, 733, 1061
Lsp1109I GCAGC 3 cut(s) 34, 245, 757
LweI GCATC 1 cut(s) 790
MaeI CTAG 2 cut(s) 381, 569
MaeII ACGT 2 cut(s) 199, 1096
MaeIII GTNAC 3 cut(s) 761, 1180, 1186
MalI GATC 3 cut(s) 171, 285, 681
MboI GATC 3 cut(s) 169, 283, 679
MboII GAAGA 6 cut(s) 47, 171, 320, 361, 434, 472
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 2 cut(s) 193, 1066
MlsI TGGCCA 1 cut(s) 623
MluNI TGGCCA 1 cut(s) 623
MlyI GAGTC 1 cut(s) 209
MmeI TCCRAC 2 cut(s) 70, 678
Mox20I TGGCCA 1 cut(s) 623
MroNI GCCGGC 1 cut(s) 1052
MscI TGGCCA 1 cut(s) 623
MseI TTAA 6 cut(s) 608, 651, 936, 1107, 1163, 1207
Msp20I TGGCCA 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 334
MspI CCGG 3 cut(s) 797, 1053, 1172
MspR9I CCNGG 1 cut(s) 1119
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 2 cut(s) 669, 1146
MvaI CCWGG 1 cut(s) 1119
MvnI CGCG 1 cut(s) 1083
MwoI GCNNNNNNNGC 5 cut(s) 28, 230, 436, 802, 1091
NaeI GCCGGC 1 cut(s) 1054
NdeII GATC 3 cut(s) 169, 283, 679
NgoMIV GCCGGC 1 cut(s) 1052
NlaIII CATG 5 cut(s) 48, 446, 697, 762, 785
NlaIV GGNNCC 1 cut(s) 891
NmuCI GTSAC 1 cut(s) 1186
NspI RCATGY 2 cut(s) 48, 762
PauI GCGCGC 1 cut(s) 1081
PciI ACATGT 1 cut(s) 758
PctI GAATGC 2 cut(s) 669, 1146
PdiI GCCGGC 1 cut(s) 1054
PfeI GAWTC 1 cut(s) 1193
PkrI GCNGC 4 cut(s) 24, 235, 772, 1204
PleI GAGTC 1 cut(s) 209
PmaCI CACGTG 1 cut(s) 1097
PmlI CACGTG 1 cut(s) 1097
PpsI GAGTC 1 cut(s) 209
Ppu21I YACGTR 1 cut(s) 1097
PscI ACATGT 1 cut(s) 758
PsiI TTATAA 1 cut(s) 828
Psp124BI GAGCTC 1 cut(s) 1066
Psp6I CCWGG 1 cut(s) 1117
PspCI CACGTG 1 cut(s) 1097
PspGI CCWGG 1 cut(s) 1117
PspN4I GGNNCC 1 cut(s) 891
PspPI GGNCC 3 cut(s) 487, 889, 907
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 679
PteI GCGCGC 1 cut(s) 1081
PvuII CAGCTG 1 cut(s) 334
RsaI GTAC 2 cut(s) 499, 1123
RsaNI GTAC 2 cut(s) 498, 1122
SacI GAGCTC 1 cut(s) 1066
SaqAI TTAA 6 cut(s) 608, 651, 936, 1107, 1163, 1207
SatI GCNGC 4 cut(s) 23, 234, 771, 1203
Sau3AI GATC 3 cut(s) 169, 283, 679
Sau96I GGNCC 3 cut(s) 487, 889, 907
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 1119
SduI GDGCHC 2 cut(s) 193, 1066
SfaNI GCATC 1 cut(s) 790
SinI GGWCC 2 cut(s) 889, 907
SmlI CTYRAG 4 cut(s) 125, 131, 1016, 1076
SmoI CTYRAG 4 cut(s) 125, 131, 1016, 1076
SsiI CCGC 1 cut(s) 48
SspMI CTAG 2 cut(s) 381, 569
SstI GAGCTC 1 cut(s) 1066
StyD4I CCNGG 1 cut(s) 1117
TaaI ACNGT 1 cut(s) 1186
TaiI ACGT 2 cut(s) 202, 1099
TaqI TCGA 1 cut(s) 729
TfiI GAWTC 1 cut(s) 1193
Tru1I TTAA 6 cut(s) 608, 651, 936, 1107, 1163, 1207
Tru9I TTAA 6 cut(s) 608, 651, 936, 1107, 1163, 1207
TscAI CASTG 3 cut(s) 109, 556, 631
TseFI GTSAC 1 cut(s) 1186
TseI GCWGC 4 cut(s) 22, 233, 770, 1202
Tsp45I GTSAC 1 cut(s) 1186
TspDTI ATGAA 6 cut(s) 99, 257, 408, 548, 808, 1050
TspGWI ACGGA 2 cut(s) 113, 799
TspRI CASTG 3 cut(s) 109, 556, 631
VpaK11BI GGWCC 2 cut(s) 889, 907
XapI RAATTY 1 cut(s) 709
XbaI TCTAGA 2 cut(s) 380, 568
XceI RCATGY 2 cut(s) 48, 762
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 2 cut(s) 381, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.