Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009500

Physical Location & Seq

Genomic Coordinates Reverse (-)

62647986 .. 62651577

Gene Structure 3592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG399300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGTCTAACCTCCAAAGCGAGCAGCTTCTGCAAATGGAAACAACATGCGGGTCTCTTCTATATGAGCTTCAGATAATTTGGAATGAAGTTGGAGAGACGGACACTGATAGGGACAAGATGTTGCTTGAGCTTGAGCAGGAGTGCCTTGAAGTATACAGAAGAAAGGTTGATCAGGCTAATCGGAGTAGGGCACAGCTACGTCAGGCAATTGCTGACTCTGAAGCAGAACTTGCAGCAATCTGTTCTGCAATGGGGGAGCGACCAGTTCATATTAGGCAGTCAGATCAAAATGCTGGAAGCTTGAAGGAAGAACTCAGTAAAATAATTCCACAGCTGGAGGAAATGCAGAAGAGAAAAATTGAAAGAAAAAATCAATTTCTAGAAGTTGTGGAGGAGATACAAATTATTTCAAGTGAAATTAATGGAAGCACAAGTTGCATTTCTTCTAAAATAGTTGTGGATGAAACTGATTTGTCTTTGAGAAGGCTTGAAGAATTGCACAGACAGCTCCATGCACTCCAAACAGAGAAGAGTGATAGGCTGAAGCAGATACAGGCCCATCTGGCAATGGTGGATGCATTGGCTTCAAAAACCATCGCATGGGAGAAGGAGAGAGGAATTGAATTTACTTATGATGGTGTTCGTCTTCTTTCCATGCTGGAAGAGTATACTATATTACGGGATGAAAAGGAACAAGAACGCCGAAGGCAGCGGGACCAGAAAAAGATTCAGGGTCAGCTGATAGCTGAACAAGAGGCACTTTATGGGTCAAAACCTAGTCCTTCAAAGCCGAGTGTAAAAAAGGGTCCCAGAATGTCAACAGGAGGTGCAAGCAATAGAAGACTTTCAATGCAAGCTCCCAAAGCTGATCCAATTCACTCCGCTAGAGTGCCTGCTACTCCTCTTTCACGTCCTAGTTCAAGGAAGAGTGATCGAGGCCACCAAAATGATCATCACGATGATGGCCTTACAGCTCTGGCCACTGGAAGGAGAACCTTAAGTCGGAATAGCTCTTTTGGTTCCAACTATGAACCAGAGTCACCCATGATGCGGAAACCCTTTGCGCCAATTTCTCTTCCTACTGACAACGGCACATTTGCTACTCCTATGAAGTCCACAAATGTTCCAGAGGAAGACAACACAAAAACACCCAAGGTGATGACTTTTGTGCCCACCACACCACAAACAGTGTCAGTACCAATGCAGACAGCCGTGACCCCAGCTCCTCCACCACCTCAGCCGATTCCTTATGCCACCAAAGTAGTCGAGGAGGTTACTCCTGAAGAGATTGAATACTCTTTTGAGGAAATCAGAGCGGGTTTCGTGCTCCCTGAAGCACATACCAAGTCGATACATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009574 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030863 GO:0030981 GO:0031109 GO:0032502 GO:0032506 GO:0034622 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044002 GO:0044085 GO:0044111 GO:0044115 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0048646 GO:0048856 GO:0050896 GO:0051258 GO:0051301 GO:0051701 GO:0051704 GO:0051707 GO:0051816 GO:0052093 GO:0052095 GO:0052096 GO:0055028 GO:0061640 GO:0065003 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

453

Amino Acids

51.04

Weight (kDa)

5.93

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP65_ASE1	PF03999	18 - 187	1.6e-33	Microtubule associated protein (MAP65/ASE1 family)
MAP65_ASE1	PF03999	190 - 264	1.2e-14	Microtubule associated protein (MAP65/ASE1 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51600
fragaria_vesca	FvH4_7g28190 FvH4_7g28190 FvH4_7g28190 FvH4_7g28190
malus_domestica	MD01G1185800.v1.1 MD07G1257900.v1.1
prunus_persica	Prupe.2G282400_v2.0.a1 Prupe.2G282400_v2.0.a1 Prupe.2G282400_v2.0.a1
pyrus_communis	pycom01g19750 pycom07g23100
rosa_chinensis	RchiOBHm_Chr1g0375141
rosa_laevigata	RLG00000026683
rosa_multiflora	Rmu_sc0000554.1_g000022
rosa_roxburghii	Rroxscaffold_4G00282980
rosa_rugosa	Rorug01G0388800
rosa_samantha	Rh1AG399300 Rh1BG365200 Rh1CG378100 Rh1DG395900
rosa_wichuraiana	Rw1G035450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	600
AccBSI	CCGCTC	1 cut(s)	1316
AccI	GTMKAC	2 cut(s)	153, 668
AciI	CCGC	5 cut(s)	48, 712, 882, 1051, 1316
AclWI	GGATC	1 cut(s)	863
AcoI	YGGCCR	1 cut(s)	978
AcsI	RAATTY	1 cut(s)	623
AcuI	CTGAAG	5 cut(s)	53, 240, 563, 1302, 1353
AfaI	GTAC	1 cut(s)	1197
AfiI	CCNNNNNNNGG	4 cut(s)	600, 987, 1002, 1050
AflII	CTTAAG	1 cut(s)	997
AflIII	ACRYGT	1 cut(s)	1354
AjiI	CACGTC	1 cut(s)	911
Alw21I	GWGCWC	1 cut(s)	1329
Alw26I	GTCTC	2 cut(s)	57, 89
AlwI	GGATC	1 cut(s)	863
AlwNI	CAGNNNCTG	1 cut(s)	28
AoxI	GGCC	4 cut(s)	555, 937, 964, 978
ApeKI	GCWGC	3 cut(s)	22, 233, 709
ApoI	RAATTY	1 cut(s)	623
AseI	ATTAAT	1 cut(s)	420
Asp700I	GAANNNNTTC	1 cut(s)	844
AspLEI	GCGC	1 cut(s)	1066
AspS9I	GGNCC	3 cut(s)	556, 715, 806
AsuHPI	GGTGA	2 cut(s)	1032, 1168
AvaII	GGWCC	2 cut(s)	715, 806
BaeGI	GKGCMC	2 cut(s)	193, 1173
BalI	TGGCCA	1 cut(s)	980
BbsI	GAAGAC	3 cut(s)	638, 847, 1140
Bbv12I	GWGCWC	1 cut(s)	1329
BbvCI	CCTCAGC	1 cut(s)	1236
BbvI	GCAGC	3 cut(s)	34, 245, 721
BccI	CCATC	4 cut(s)	567, 602, 629, 956
BceAI	ACGGC	2 cut(s)	1105, 1196
BclI	TGATCA	2 cut(s)	169, 949
BcoDI	GTCTC	2 cut(s)	57, 89
BfaI	CTAG	4 cut(s)	380, 777, 885, 915
BfrI	CTTAAG	1 cut(s)	997
BglI	GCCNNNNNGGC	1 cut(s)	563
BisI	GCNGC	3 cut(s)	23, 234, 710
BlsI	GCNGC	3 cut(s)	24, 235, 711
Bme18I	GGWCC	2 cut(s)	715, 806
BmgBI	CACGTC	1 cut(s)	911
BmgT120I	GGNCC	3 cut(s)	556, 715, 806
BmiI	GGNNCC	4 cut(s)	716, 807, 808, 1021
BmsI	GCATC	2 cut(s)	565, 1038
BpiI	GAAGAC	3 cut(s)	638, 847, 1140
BpmI	CTGGAG	1 cut(s)	356
Bpu10I	CCTNAGC	1 cut(s)	1236
BpuEI	CTTGAG	2 cut(s)	146, 152
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	1152
BsaXI	ACNNNNNCTCC	2 cut(s)	1207, 1237
Bsc4I	CCNNNNNNNGG	4 cut(s)	600, 987, 1002, 1050
Bse1I	ACTGG	2 cut(s)	263, 988
Bse3DI	GCAATG	2 cut(s)	255, 573
BseDI	CCNNGG	1 cut(s)	1152
BseGI	GGATG	3 cut(s)	466, 580, 688
BseLI	CCNNNNNNNGG	4 cut(s)	600, 987, 1002, 1050
BseMI	GCAATG	2 cut(s)	255, 573
BseMII	CTCAG	2 cut(s)	328, 1250
BseNI	ACTGG	2 cut(s)	263, 988
BseRI	GAGGAG	4 cut(s)	407, 891, 1215, 1283
BseSI	GKGCMC	2 cut(s)	193, 1173
BseXI	GCAGC	3 cut(s)	34, 245, 721
BseYI	CCCAGC	1 cut(s)	1219
BshFI	GGCC	4 cut(s)	557, 939, 966, 980
BsiHKAI	GWGCWC	1 cut(s)	1329
BslFI	GGGAC	3 cut(s)	125, 728, 792
BslI	CCNNNNNNNGG	4 cut(s)	600, 987, 1002, 1050
BsmAI	GTCTC	2 cut(s)	57, 89
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	3 cut(s)	125, 728, 792
BsnI	GGCC	4 cut(s)	557, 939, 966, 980
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	3 cut(s)	193, 1173, 1329
Bsp143I	GATC	5 cut(s)	169, 283, 868, 931, 949
BspACI	CCGC	5 cut(s)	48, 712, 882, 1051, 1316
BspANI	GGCC	4 cut(s)	557, 939, 966, 980
BspCNI	CTCAG	2 cut(s)	327, 1249
BspLI	GGNNCC	4 cut(s)	716, 807, 808, 1021
BspPI	GGATC	1 cut(s)	863
BspTI	CTTAAG	1 cut(s)	997
BspTNI	GGTCTC	1 cut(s)	57
BsrBI	CCGCTC	1 cut(s)	1316
BsrDI	GCAATG	2 cut(s)	255, 573
BsrI	ACTGG	2 cut(s)	263, 988
BssECI	CCNNGG	1 cut(s)	1152
BssMI	GATC	5 cut(s)	169, 283, 868, 931, 949
BssNAI	GTATAC	2 cut(s)	154, 669
BssT1I	CCWWGG	1 cut(s)	1152
Bst1107I	GTATAC	2 cut(s)	154, 669
Bst4CI	ACNGT	1 cut(s)	1189
Bst6I	CTCTTC	7 cut(s)	60, 344, 524, 657, 920, 1080, 1278
BstAFI	CTTAAG	1 cut(s)	997
BstAPI	GCANNNNNTGC	3 cut(s)	28, 230, 435
BstC8I	GCNNGC	4 cut(s)	20, 832, 855, 894
BstDEI	CTNAG	2 cut(s)	314, 1236
BstF5I	GGATG	3 cut(s)	466, 580, 688
BstHHI	GCGC	1 cut(s)	1066
BstKTI	GATC	5 cut(s)	172, 286, 871, 934, 952
BstMAI	GTCTC	2 cut(s)	57, 89
BstMBI	GATC	5 cut(s)	169, 283, 868, 931, 949
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 230, 435, 505, 563, 863
BstNSI	RCATGY	2 cut(s)	48, 1358
BstSLI	GKGCMC	2 cut(s)	193, 1173
BstV1I	GCAGC	3 cut(s)	34, 245, 721
BstV2I	GAAGAC	3 cut(s)	638, 847, 1140
BstZ17I	GTATAC	2 cut(s)	154, 669
BsuRI	GGCC	4 cut(s)	557, 939, 966, 980
BtgZI	GCGATG	1 cut(s)	580
BtrI	CACGTC	1 cut(s)	911
BtsCI	GGATG	3 cut(s)	466, 580, 688
BtsIMutI	CAGTG	3 cut(s)	102, 981, 1194
Cac8I	GCNNGC	4 cut(s)	20, 832, 855, 894
CaiI	CAGNNNCTG	1 cut(s)	28
CfoI	GCGC	1 cut(s)	1066
Cfr13I	GGNCC	3 cut(s)	556, 715, 806
Csp6I	GTAC	1 cut(s)	1196
CviAII	CATG	6 cut(s)	45, 512, 600, 655, 1045, 1355
CviQI	GTAC	1 cut(s)	1196
DdeI	CTNAG	2 cut(s)	314, 1236
DpnI	GATC	5 cut(s)	171, 285, 870, 933, 951
DpnII	GATC	5 cut(s)	169, 283, 868, 931, 949
EaeI	YGGCCR	1 cut(s)	978
Eam1104I	CTCTTC	7 cut(s)	60, 344, 524, 657, 920, 1080, 1278
EarI	CTCTTC	7 cut(s)	60, 344, 524, 657, 920, 1080, 1278
Eco130I	CCWWGG	1 cut(s)	1152
Eco31I	GGTCTC	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	715, 806
Eco57I	CTGAAG	5 cut(s)	53, 240, 563, 1302, 1353
EcoO109I	RGGNCCY	1 cut(s)	806
EcoT14I	CCWWGG	1 cut(s)	1152
EcoT22I	ATGCAT	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	1152
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	6 cut(s)	48, 515, 603, 658, 1048, 1358
FalI	AAGNNNNNCTT	4 cut(s)	213, 245, 744, 776
FaqI	GGGAC	3 cut(s)	125, 728, 792
FatI	CATG	6 cut(s)	44, 511, 599, 654, 1044, 1354
FauI	CCCGC	3 cut(s)	41, 705, 1309
FbaI	TGATCA	2 cut(s)	169, 949
FblI	GTMKAC	2 cut(s)	153, 668
Fnu4HI	GCNGC	3 cut(s)	23, 234, 710
FokI	GGATG	3 cut(s)	473, 587, 695
Fsp4HI	GCNGC	3 cut(s)	23, 234, 710
FspBI	CTAG	4 cut(s)	380, 777, 885, 915
GlaI	GCGC	1 cut(s)	1065
GluI	GCNGC	3 cut(s)	23, 234, 710
GsaI	CCCAGC	1 cut(s)	1223
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	4 cut(s)	557, 939, 966, 980
HhaI	GCGC	1 cut(s)	1066
Hin1II	CATG	6 cut(s)	48, 515, 603, 658, 1048, 1358
Hin6I	GCGC	1 cut(s)	1064
HinP1I	GCGC	1 cut(s)	1064
HincII	GTYRAC	1 cut(s)	819
HindII	GTYRAC	1 cut(s)	819
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	4 cut(s)	215, 727, 1037, 1243
HphI	GGTGA	2 cut(s)	1032, 1168
Hpy166II	GTNNAC	4 cut(s)	154, 669, 819, 1116
Hpy188I	TCNGA	7 cut(s)	72, 183, 220, 283, 1005, 1313, 1361
Hpy188III	TCNNGA	4 cut(s)	380, 956, 1127, 1280
Hpy8I	GTNNAC	4 cut(s)	154, 669, 819, 1116
HpyAV	CCTTC	6 cut(s)	298, 477, 601, 699, 792, 981
HpyCH4III	ACNGT	1 cut(s)	1189
HpyCH4IV	ACGT	2 cut(s)	199, 910
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 230, 435, 505, 563, 863
HpyF3I	CTNAG	2 cut(s)	314, 1236
HpySE526I	ACGT	2 cut(s)	199, 910
Hsp92II	CATG	6 cut(s)	48, 515, 603, 658, 1048, 1358
HspAI	GCGC	1 cut(s)	1064
KflI	GGGWCCC	1 cut(s)	806
Ksp22I	TGATCA	2 cut(s)	169, 949
Kzo9I	GATC	5 cut(s)	169, 283, 868, 931, 949
LmnI	GCTCC	5 cut(s)	256, 513, 862, 1228, 1332
Lsp1109I	GCAGC	3 cut(s)	34, 245, 721
LweI	GCATC	2 cut(s)	565, 1038
MaeI	CTAG	4 cut(s)	380, 777, 885, 915
MaeII	ACGT	2 cut(s)	199, 910
MaeIII	GTNAC	3 cut(s)	1038, 1213, 1273
MalI	GATC	5 cut(s)	171, 285, 870, 933, 951
MbiI	CCGCTC	1 cut(s)	1316
MboI	GATC	5 cut(s)	169, 283, 868, 931, 949
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	3 cut(s)	193, 1173, 1329
MlsI	TGGCCA	1 cut(s)	980
MluNI	TGGCCA	1 cut(s)	980
MlyI	GAGTC	2 cut(s)	209, 1046
MmeI	TCCRAC	3 cut(s)	70, 983, 1047
Mox20I	TGGCCA	1 cut(s)	980
Mph1103I	ATGCAT	1 cut(s)	580
MroXI	GAANNNNTTC	1 cut(s)	844
MscI	TGGCCA	1 cut(s)	980
MseI	TTAA	2 cut(s)	420, 998
MslI	CAYNNNNRTG	3 cut(s)	945, 957, 960
Msp20I	TGGCCA	1 cut(s)	980
MspA1I	CMGCKG	3 cut(s)	334, 712, 739
MspCI	CTTAAG	1 cut(s)	997
MunI	CAATTG	1 cut(s)	207
MwoI	GCNNNNNNNGC	6 cut(s)	28, 230, 435, 505, 563, 863
NdeII	GATC	5 cut(s)	169, 283, 868, 931, 949
NlaIII	CATG	6 cut(s)	48, 515, 603, 658, 1048, 1358
NlaIV	GGNNCC	4 cut(s)	716, 807, 808, 1021
NmeAIII	GCCGAG	1 cut(s)	816
NmuCI	GTSAC	2 cut(s)	1038, 1213
NsiI	ATGCAT	1 cut(s)	580
NspI	RCATGY	2 cut(s)	48, 1358
PciI	ACATGT	1 cut(s)	1354
PdmI	GAANNNNTTC	1 cut(s)	844
PfeI	GAWTC	2 cut(s)	727, 1243
PflMI	CCANNNNNTGG	1 cut(s)	600
PkrI	GCNGC	3 cut(s)	24, 235, 711
PleI	GAGTC	2 cut(s)	209, 1045
PpsI	GAGTC	2 cut(s)	209, 1045
PpuMI	RGGWCCY	1 cut(s)	806
PscI	ACATGT	1 cut(s)	1354
PshBI	ATTAAT	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	806
PspFI	CCCAGC	1 cut(s)	1219
PspN4I	GGNNCC	4 cut(s)	716, 807, 808, 1021
PspPI	GGNCC	3 cut(s)	556, 715, 806
PspPPI	RGGWCCY	1 cut(s)	806
PstNI	CAGNNNCTG	1 cut(s)	28
PvuII	CAGCTG	2 cut(s)	334, 739
RsaI	GTAC	1 cut(s)	1197
RsaNI	GTAC	1 cut(s)	1196
RseI	CAYNNNNRTG	3 cut(s)	945, 957, 960
SaqAI	TTAA	2 cut(s)	420, 998
SatI	GCNGC	3 cut(s)	23, 234, 710
Sau3AI	GATC	5 cut(s)	169, 283, 868, 931, 949
Sau96I	GGNCC	3 cut(s)	556, 715, 806
SchI	GAGTC	2 cut(s)	209, 1046
SduI	GDGCHC	3 cut(s)	193, 1173, 1329
SfaNI	GCATC	2 cut(s)	565, 1038
SinI	GGWCC	2 cut(s)	715, 806
SmiMI	CAYNNNNRTG	3 cut(s)	945, 957, 960
SmlI	CTYRAG	3 cut(s)	125, 131, 997
SmoI	CTYRAG	3 cut(s)	125, 131, 997
SsiI	CCGC	5 cut(s)	48, 712, 882, 1051, 1316
SspMI	CTAG	4 cut(s)	380, 777, 885, 915
StyI	CCWWGG	1 cut(s)	1152
TaaI	ACNGT	1 cut(s)	1189
TaiI	ACGT	2 cut(s)	202, 913
TaqI	TCGA	3 cut(s)	934, 1266, 1349
TfiI	GAWTC	2 cut(s)	727, 1243
Tru1I	TTAA	2 cut(s)	420, 998
Tru9I	TTAA	2 cut(s)	420, 998
TscAI	CASTG	3 cut(s)	109, 988, 1194
TseFI	GTSAC	2 cut(s)	1038, 1213
TseI	GCWGC	3 cut(s)	22, 233, 709
Tsp45I	GTSAC	2 cut(s)	1038, 1213
TspDTI	ATGAA	6 cut(s)	99, 257, 477, 699, 1044, 1124
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	3 cut(s)	109, 988, 1194
Van91I	CCANNNNNTGG	1 cut(s)	600
Vha464I	CTTAAG	1 cut(s)	997
VpaK11BI	GGWCC	2 cut(s)	715, 806
VspI	ATTAAT	1 cut(s)	420
XapI	RAATTY	1 cut(s)	623
XbaI	TCTAGA	1 cut(s)	379
XceI	RCATGY	2 cut(s)	48, 1358
XmiI	GTMKAC	2 cut(s)	153, 668
XmnI	GAANNNNTTC	1 cut(s)	844
XspI	CTAG	4 cut(s)	380, 777, 885, 915
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.