Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0019854

Physical Location & Seq

Genomic Coordinates Reverse (-)

20556216 .. 20557350

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGGACCGCGACCCCCTGTCGGCTCCGATCGGTAAAGGTCCCGACGTGGATCAACGGTGTAGAAGCCAACGAGTATGTTGGTGTCGGGGTCGATTTGGACCTACCCTGGAATCAAAGGAAAAGCATGCCAATCATACTAGAGTGGTTCTGGCACACCCCCCTGATTGTTGTACCAAACCCAAGAATAAGCTTGCACATGAGGTCATTTTGGTACACCGAGGAAATTGCAGTTTTACCACCAAGGCAAATATGGCTGAATCTGCTAATGCTTCAACCGTCCTCATCATAAATAACCGTCCAGAAGTATTTTTATGGCTTATGGCTGTTGGTACCATCTTATTTGCTTCTTATTGGTCTGCATGGACTGCAAGAGAAGCAACTATTGAGCATGACAAGCTATTGAAGGTTATGCTATGCCTTTTTGCAGCTATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

146

Amino Acids

16.33

Weight (kDa)

9.1

Isoelectric Point (pI)

25.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	49 - 102	2.6e-08	PA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0019854)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355401
rosa_multiflora	Rmu_sc0023233.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300300
rosa_samantha	Rh4AG020100
rosa_wichuraiana	Rw1G017070 Rw1G022980 Rw7G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	332
AccII	CGCG	1 cut(s)	12
AciI	CCGC	2 cut(s)	5, 10
AclWI	GGATC	1 cut(s)	60
AfaI	GTAC	3 cut(s)	175, 216, 334
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	276, 406
AhdI	GACNNNNNGTC	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	193, 400, 431
AluI	AGCT	3 cut(s)	193, 400, 431
AlwI	GGATC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	428
Asp718I	GGTACC	1 cut(s)	332
AspS9I	GGNCC	3 cut(s)	7, 41, 101
AvaII	GGWCC	3 cut(s)	7, 41, 101
BanI	GGYRCC	1 cut(s)	332
BccI	CCATC	1 cut(s)	344
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	1 cut(s)	110
BfaI	CTAG	1 cut(s)	141
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	3 cut(s)	7, 41, 101
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	3 cut(s)	7, 41, 101
BmiI	GGNNCC	3 cut(s)	27, 43, 334
BmrFI	CCNGG	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	108, 220, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	3 cut(s)	108, 220, 243
BseLI	CCNNNNNNNGG	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	332
BsiEI	CGRYCG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	30, 52
BspACI	CCGC	2 cut(s)	5, 10
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	3 cut(s)	27, 43, 334
BspPI	GGATC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	108, 220, 243
BssMI	GATC	2 cut(s)	30, 52
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	60, 280, 299
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	2 cut(s)	129, 195
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	2 cut(s)	33, 55
BstMBI	GATC	2 cut(s)	30, 52
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 263, 368, 377, 397
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	12
BtrI	CACGTC	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	129, 195
Cfr13I	GGNCC	3 cut(s)	7, 41, 101
CpoI	CGGWCCG	1 cut(s)	7
Csp6I	GTAC	3 cut(s)	174, 215, 333
CspI	CGGWCCG	1 cut(s)	7
CviAII	CATG	4 cut(s)	128, 200, 363, 392
CviJI	RGCY	8 cut(s)	26, 69, 193, 257, 319, 326, 400, 431
CviKI_1	RGCY	8 cut(s)	26, 69, 193, 257, 319, 326, 400, 431
CviQI	GTAC	3 cut(s)	174, 215, 333
DpnI	GATC	2 cut(s)	32, 54
DpnII	GATC	2 cut(s)	30, 52
DriI	GACNNNNNGTC	1 cut(s)	19
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	3 cut(s)	7, 41, 101
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	4 cut(s)	131, 203, 366, 395
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	4 cut(s)	127, 199, 362, 391
Fnu4HI	GCNGC	1 cut(s)	429
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	1 cut(s)	429
Hin1II	CATG	4 cut(s)	131, 203, 366, 395
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	2 cut(s)	113, 260
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	30
Hpy188III	TCNNGA	2 cut(s)	44, 302
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	3 cut(s)	60, 280, 299
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	5 cut(s)	197, 231, 362, 371, 428
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 263, 368, 377, 397
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	4 cut(s)	131, 203, 366, 395
KpnI	GGTACC	1 cut(s)	336
Kzo9I	GATC	2 cut(s)	30, 52
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	6 cut(s)	32, 95, 122, 137, 177, 315
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	48
MalI	GATC	2 cut(s)	32, 54
MboI	GATC	2 cut(s)	30, 52
MluCI	AATT	1 cut(s)	226
MnlI	CCTC	3 cut(s)	196, 215, 293
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	5 cut(s)	254, 263, 368, 377, 397
NdeII	GATC	2 cut(s)	30, 52
NlaIII	CATG	4 cut(s)	131, 203, 366, 395
NlaIV	GGNNCC	3 cut(s)	27, 43, 334
NspI	RCATGY	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	113, 260
PkrI	GCNGC	1 cut(s)	430
Ple19I	CGATCG	1 cut(s)	33
PpuMI	RGGWCCY	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	27, 43, 334
PspPI	GGNCC	3 cut(s)	7, 41, 101
PspPPI	RGGWCCY	1 cut(s)	41
PvuI	CGATCG	1 cut(s)	33
RsaI	GTAC	3 cut(s)	175, 216, 334
RsaNI	GTAC	3 cut(s)	174, 215, 333
Rsr2I	CGGWCCG	1 cut(s)	7
RsrII	CGGWCCG	1 cut(s)	7
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	30, 52
Sau96I	GGNCC	3 cut(s)	7, 41, 101
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	8 cut(s)	43, 51, 106, 195, 207, 402, 411, 433
SinI	GGWCC	3 cut(s)	7, 41, 101
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	1 cut(s)	226
SsiI	CCGC	2 cut(s)	5, 10
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	3 cut(s)	60, 280, 299
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	94
TasI	AATT	1 cut(s)	226
TfiI	GAWTC	2 cut(s)	113, 260
TseI	GCWGC	1 cut(s)	428
VpaK11BI	GGWCC	3 cut(s)	7, 41, 101
XceI	RCATGY	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.