Rw7G032080

Signal peptide peptidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0019854
Physical Location & Seq
Forward (+)
46346547 .. 46347964
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G032080.1

Sequence Viewer

Length: 456 bp
ATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCACAGACTGTATTGCAGGTAAAGGTACAAACTTGGGTAGATGGTGTTGAGGCTTGTGAGTTTGTTGGTGTGGGTGCTAGATTTGGAACTACCATTGAATCAAAAGAGAATAAGGCAAACCAAATTCACCTTATACTTTCAAACCCTCGAGATTGCTGCAGTCCACCGAAAAATAAGATTGCTCGGGATGTCATTATGGTCGACCGAGGCAACTGTAAATTCACAACCAAAGCAAATTATGCCCAAGCTGCTAATGCCTCAGCTATCCTTATTATAAATAACCAGAAAGGTAAACAATCGGGTGCCAAAGTGCAAAGATGCACGGACTGTTCCAAGCTCAAACACTCAAATCTTTGGGAGTTTGAATGCTCAGTGCATTTTGCACAGTCATGCGACTGTCAATTTTATTTTTAG

Protein Analysis

151

Amino Acids

16.73

Weight (kDa)

8.76

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 64 - 114 2.4e-09 PA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019854)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0355401
rosa_multiflora Rmu_sc0023233.1_g000001
rosa_roxburghii Rroxscaffold_4G00300300
rosa_samantha Rh4AG020100
rosa_wichuraiana Rw1G017070 Rw1G022980 Rw7G032080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 344
AccI GTMKAC 1 cut(s) 243
AcsI RAATTY 2 cut(s) 165, 260
AfaI GTAC 1 cut(s) 69
AgsI TTSAA 3 cut(s) 140, 183, 407
AluBI AGCT 3 cut(s) 290, 305, 379
AluI AGCT 3 cut(s) 290, 305, 379
Ama87I CYCGRG 2 cut(s) 189, 225
AoxI GGCC 1 cut(s) 19
ApeKI GCWGC 2 cut(s) 198, 290
ApoI RAATTY 2 cut(s) 165, 260
AsuHPI GGTGA 1 cut(s) 161
AvaI CYCGRG 2 cut(s) 189, 225
BanI GGYRCC 1 cut(s) 344
BbvCI CCTCAGC 1 cut(s) 301
BbvI GCAGC 2 cut(s) 185, 277
BccI CCATC 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 199
BfuAI ACCTGC 1 cut(s) 49
BisI GCNGC 2 cut(s) 199, 291
BlsI GCNGC 2 cut(s) 200, 292
BmeT110I CYCGRG 2 cut(s) 189, 225
BmiI GGNNCC 1 cut(s) 346
BmsI GCATC 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 315, 426
BseXI GCAGC 2 cut(s) 185, 277
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 344
BsiEI CGRYCG 1 cut(s) 247
BsiHKCI CYCGRG 2 cut(s) 189, 225
BsmI GAATGC 1 cut(s) 413
BsnI GGCC 1 cut(s) 21
BsoBI CYCGRG 2 cut(s) 189, 225
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 2 cut(s) 314, 425
BspLI GGNNCC 1 cut(s) 346
BspMAI CTGCAG 1 cut(s) 203
BspMI ACCTGC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 247
Bst4CI ACNGT 5 cut(s) 52, 257, 371, 429, 440
BstAPI GCANNNNNTGC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 301, 412
BstF5I GGATG 1 cut(s) 235
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 3 cut(s) 281, 290, 296
BstSFI CTRYAG 1 cut(s) 199
BstV1I GCAGC 2 cut(s) 185, 277
BsuRI GGCC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 420
BveI ACCTGC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 68
CviAII CATG 2 cut(s) 29, 432
CviJI RGCY 5 cut(s) 21, 95, 290, 305, 379
CviKI_1 RGCY 5 cut(s) 21, 95, 290, 305, 379
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 2 cut(s) 301, 412
Eco88I CYCGRG 2 cut(s) 189, 225
FaeI CATG 2 cut(s) 32, 435
FaiI YATR 6 cut(s) 30, 176, 239, 282, 317, 433
FatI CATG 2 cut(s) 28, 431
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 199, 291
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 2 cut(s) 199, 291
FspBI CTAG 1 cut(s) 120
GluI GCNGC 2 cut(s) 199, 291
HaeIII GGCC 1 cut(s) 21
Hin1II CATG 2 cut(s) 32, 435
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 1 cut(s) 140
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 3 cut(s) 206, 244, 335
Hpy188III TCNNGA 2 cut(s) 191, 227
Hpy8I GTNNAC 3 cut(s) 206, 244, 335
HpyAV CCTTC 1 cut(s) 6
HpyCH4III ACNGT 5 cut(s) 52, 257, 371, 429, 440
HpyCH4V TGCA 7 cut(s) 28, 58, 201, 355, 363, 418, 425
HpyF10VI GCNNNNNNNGC 3 cut(s) 281, 290, 296
HpyF3I CTNAG 2 cut(s) 301, 412
Hsp92II CATG 2 cut(s) 32, 435
LpnPI CCDG 3 cut(s) 3, 44, 338
Lsp1109I GCAGC 2 cut(s) 185, 277
LweI GCATC 1 cut(s) 350
MaeI CTAG 1 cut(s) 120
MboII GAAGA 3 cut(s) 21, 30, 33
MluCI AATT 4 cut(s) 165, 260, 277, 443
MnlI CCTC 4 cut(s) 85, 198, 242, 310
MslI CAYNNNNRTG 1 cut(s) 430
Mva1269I GAATGC 1 cut(s) 413
MwoI GCNNNNNNNGC 3 cut(s) 281, 290, 296
NlaIII CATG 2 cut(s) 32, 435
NlaIV GGNNCC 1 cut(s) 346
PaeR7I CTCGAG 1 cut(s) 189
PctI GAATGC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 200, 292
PsiI TTATAA 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 346
PstI CTGCAG 1 cut(s) 203
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 430
SalI GTCGAC 1 cut(s) 242
SatI GCNGC 2 cut(s) 199, 291
SetI ASST 8 cut(s) 17, 63, 69, 174, 292, 307, 334, 381
SfaNI GCATC 1 cut(s) 350
SfcI CTRYAG 1 cut(s) 199
Sfr274I CTCGAG 1 cut(s) 189
SlaI CTCGAG 1 cut(s) 189
SmiMI CAYNNNNRTG 1 cut(s) 430
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 4 cut(s) 165, 260, 277, 443
SspMI CTAG 1 cut(s) 120
TaaI ACNGT 5 cut(s) 52, 257, 371, 429, 440
TaqI TCGA 2 cut(s) 190, 243
TaqII GACCGA 1 cut(s) 261
TasI AATT 4 cut(s) 165, 260, 277, 443
TfiI GAWTC 1 cut(s) 140
TscAI CASTG 1 cut(s) 420
TseI GCWGC 2 cut(s) 198, 290
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 1 cut(s) 420
XapI RAATTY 2 cut(s) 165, 260
XhoI CTCGAG 1 cut(s) 189
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.