Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0019854

Physical Location & Seq

Genomic Coordinates Reverse (-)

37867759 .. 37869403

Gene Structure 1645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G017070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTAAAGGTACAAACTTGGGTAGATGGTGTTGAGGCTTGTGAGTTTGTTGGTGTGGGTGCTAGATTTGGAACTACCATTGAATCAAAAGAGAATAAGGCAAACCAAATTCACCTTATACTTTCAAACCCTCGAGATTGCTGCAGTCCACCGAAAAATAAGATTGCTCGGGATGTCATTATGGTCGACCGAGGCAACTGTAAATTCACAACCAAAGCAAATTATGCCCAAGCTGCTAATGCCTCAGCTATCCTTATTATAAATAACCAGAAAGGAAAAGCTATTTTTGCTATTGTTTTCAACCATTTTCTGTTCCATATTATGAACTTTACAAGATGGTGTGAGCCAGATGAAACTGCTCTAGATATACACATACCTGCTATCATGCTCCCACAGGATGCTGGCGTGACCTTGGAGAAAATGTTAATGAGCAATTCAGTGGTGTCTGTGCAGTTGTACTCTCCACAACGGCCAGTGGTTGACATTGCGGAAGTATTTTTATGGCTGATGGCAGTTGGCACCATCTTGTGCGCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

179

Amino Acids

19.81

Weight (kDa)

6.88

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	45 - 137	9.4e-11	PA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0019854)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355401
rosa_multiflora	Rmu_sc0023233.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300300
rosa_samantha	Rh4AG020100
rosa_wichuraiana	Rw1G017070 Rw1G022980 Rw7G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
Acc16I	TGCGCA	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	470
AcsI	RAATTY	2 cut(s)	108, 203
AfaI	GTAC	2 cut(s)	12, 458
AgsI	TTSAA	3 cut(s)	83, 126, 301
AluBI	AGCT	3 cut(s)	233, 248, 281
AluI	AGCT	3 cut(s)	233, 248, 281
Ama87I	CYCGRG	2 cut(s)	132, 168
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	2 cut(s)	141, 233
ApoI	RAATTY	2 cut(s)	108, 203
AspLEI	GCGC	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	104
AvaI	CYCGRG	2 cut(s)	132, 168
BanI	GGYRCC	1 cut(s)	518
BbvCI	CCTCAGC	1 cut(s)	244
BbvI	GCAGC	2 cut(s)	128, 220
BccI	CCATC	4 cut(s)	20, 330, 502, 530
BceAI	ACGGC	1 cut(s)	485
BcgI	CGANNNNNNTGC	2 cut(s)	123, 157
BfaI	CTAG	2 cut(s)	63, 362
BfmI	CTRYAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	142, 234
BlsI	GCNGC	2 cut(s)	143, 235
BmeT110I	CYCGRG	2 cut(s)	132, 168
BmiI	GGNNCC	1 cut(s)	520
BmsI	GCATC	1 cut(s)	388
Bpu10I	CCTNAGC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	190, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bse1I	ACTGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	190, 411
BseGI	GGATG	2 cut(s)	178, 403
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	128, 220
BsgI	GTGCAG	1 cut(s)	470
Bsh1285I	CGRYCG	1 cut(s)	190
BshFI	GGCC	1 cut(s)	472
BshNI	GGYRCC	1 cut(s)	518
BsiEI	CGRYCG	1 cut(s)	190
BsiHKCI	CYCGRG	2 cut(s)	132, 168
BsnI	GGCC	1 cut(s)	472
BsoBI	CYCGRG	2 cut(s)	132, 168
BspACI	CCGC	1 cut(s)	488
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	520
BspMAI	CTGCAG	1 cut(s)	146
BspMI	ACCTGC	1 cut(s)	385
BspT107I	GGYRCC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	473
BssECI	CCNNGG	2 cut(s)	190, 411
BssT1I	CCWWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	244
BstF5I	GGATG	2 cut(s)	178, 403
BstHHI	GCGC	1 cut(s)	533
BstMCI	CGRYCG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 233, 239, 287
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	2 cut(s)	128, 220
BsuRI	GGCC	1 cut(s)	472
BtsCI	GGATG	2 cut(s)	178, 403
BtsIMutI	CAGTG	2 cut(s)	444, 480
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	1 cut(s)	533
Csp6I	GTAC	2 cut(s)	11, 457
CviAII	CATG	1 cut(s)	385
CviJI	RGCY	7 cut(s)	38, 233, 248, 281, 346, 472, 505
CviKI_1	RGCY	7 cut(s)	38, 233, 248, 281, 346, 472, 505
CviQI	GTAC	2 cut(s)	11, 457
DdeI	CTNAG	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	411
Eco88I	CYCGRG	2 cut(s)	132, 168
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	1 cut(s)	388
FatI	CATG	1 cut(s)	384
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	2 cut(s)	142, 234
FokI	GGATG	2 cut(s)	185, 410
Fsp4HI	GCNGC	2 cut(s)	142, 234
FspAI	RTGCGCAY	1 cut(s)	532
FspBI	CTAG	2 cut(s)	63, 362
FspI	TGCGCA	1 cut(s)	532
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	2 cut(s)	142, 234
HaeIII	GGCC	1 cut(s)	472
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	1 cut(s)	388
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	2 cut(s)	187, 481
HindII	GTYRAC	2 cut(s)	187, 481
HinfI	GANTC	1 cut(s)	83
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	3 cut(s)	149, 187, 481
Hpy188III	TCNNGA	3 cut(s)	134, 170, 362
Hpy8I	GTNNAC	3 cut(s)	149, 187, 481
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	144, 451
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 233, 239, 287
HpyF3I	CTNAG	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	388
HspAI	GCGC	1 cut(s)	531
LmnI	GCTCC	1 cut(s)	393
LpnPI	CCDG	6 cut(s)	281, 360, 380, 387, 390, 486
Lsp1109I	GCAGC	2 cut(s)	128, 220
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	2 cut(s)	63, 362
MaeIII	GTNAC	1 cut(s)	406
MluCI	AATT	4 cut(s)	108, 203, 220, 433
MnlI	CCTC	4 cut(s)	28, 141, 185, 253
MseI	TTAA	2 cut(s)	425, 538
MwoI	GCNNNNNNNGC	4 cut(s)	224, 233, 239, 287
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	1 cut(s)	520
NmuCI	GTSAC	1 cut(s)	406
NsbI	TGCGCA	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	143, 235
PsiI	TTATAA	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	520
PstI	CTGCAG	1 cut(s)	146
RsaI	GTAC	2 cut(s)	12, 458
RsaNI	GTAC	2 cut(s)	11, 457
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	2 cut(s)	425, 538
SatI	GCNGC	2 cut(s)	142, 234
SetI	ASST	7 cut(s)	12, 117, 235, 250, 283, 379, 413
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	4 cut(s)	108, 203, 220, 433
SsiI	CCGC	1 cut(s)	488
SspMI	CTAG	2 cut(s)	63, 362
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	133, 186
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	4 cut(s)	108, 203, 220, 433
TatI	WGTACW	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	425, 538
Tru9I	TTAA	2 cut(s)	425, 538
TscAI	CASTG	2 cut(s)	444, 480
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	2 cut(s)	141, 233
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	338, 366
TspRI	CASTG	2 cut(s)	444, 480
XapI	RAATTY	2 cut(s)	108, 203
XbaI	TCTAGA	1 cut(s)	361
XhoI	CTCGAG	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	2 cut(s)	63, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.