Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0019854

Physical Location & Seq

Genomic Coordinates Forward (+)

48673146 .. 48674227

Gene Structure 1082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G022980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCGGACCGCGACCCCTTGTCGGCTCCGGTCCGGACTTGGATCAACGGTGTAGAAGCCAACGAGTATGTTGGTGTCGAGGCTCGATTTGGACCTACCCTGGAATCAAAGGAGAAGCATGCCAATCATACTAGAGTGGTTCTGGCAGACCCCCCTGATTGTTGTACCAAACCCAAGAATAAGCTTGCACATGAGGTCATTTTGGTACACCGAGGAAATTGCAGTTTCACCACCAAGGCAAATATGGCTGAATCTGCTAATGCTTCAGCCACCCTCATCATAAATAACCGTCCAGAACTTTTCAAGATGGTTTGTGAAGACGACGAGCCTGATGTCGAGATAGGCATACCTGCTGTTATGCTTCCCAACAAAATTGGTGAAATCTTGGAAAATGATTTAACGAACAATTCCATAGCTATACTCTCCATTGCATCCACGGTTGACATTGCAGAAGTATTTTTATGGCTTATGGCTGTTGCTACCATCTTATTTGCTTCTTATTGGTCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

170

Amino Acids

18.61

Weight (kDa)

4.85

Isoelectric Point (pI)

27.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	46 - 129	3.5e-12	PA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0019854)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355401
rosa_multiflora	Rmu_sc0023233.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300300
rosa_samantha	Rh4AG020100
rosa_wichuraiana	Rw1G017070 Rw1G022980 Rw7G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	358
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	33
AciI	CCGC	2 cut(s)	5, 10
AclWI	GGATC	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	2 cut(s)	166, 207
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	304
AhdI	GACNNNNNGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	2 cut(s)	184, 416
AluI	AGCT	2 cut(s)	184, 416
AlwI	GGATC	1 cut(s)	50
Aor13HI	TCCGGA	1 cut(s)	33
AspS9I	GGNCC	3 cut(s)	7, 31, 92
AsuHPI	GGTGA	2 cut(s)	220, 389
AvaII	GGWCC	3 cut(s)	7, 31, 92
BbsI	GAAGAC	1 cut(s)	324
BccI	CCATC	2 cut(s)	301, 491
BcgI	CGANNNNNNTGC	2 cut(s)	201, 235
BciT130I	CCWGG	1 cut(s)	101
BfaI	CTAG	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	101
Bme18I	GGWCC	3 cut(s)	7, 31, 92
BmeRI	GACNNNNNGTC	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	7, 31, 92
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	324
BsaJI	CCNNGG	4 cut(s)	99, 211, 234, 435
BsaWI	WCCGGW	2 cut(s)	28, 33
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse3DI	GCAATG	2 cut(s)	426, 444
BseAI	TCCGGA	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	4 cut(s)	99, 211, 234, 435
BseGI	GGATG	1 cut(s)	431
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	2 cut(s)	426, 444
Bsh1236I	CGCG	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	29, 34
BslI	CCNNNNNNNGG	1 cut(s)	22
Bsp13I	TCCGGA	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	2 cut(s)	5, 10
BspEI	TCCGGA	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	1 cut(s)	27
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	50
BsrDI	GCAATG	2 cut(s)	426, 444
BssECI	CCNNGG	4 cut(s)	99, 211, 234, 435
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	3 cut(s)	50, 290, 439
BstC8I	GCNNGC	2 cut(s)	120, 186
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	431
BstFNI	CGCG	1 cut(s)	12
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 254
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	431
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	120, 186
Cfr13I	GGNCC	3 cut(s)	7, 31, 92
CpoI	CGGWCCG	2 cut(s)	7, 31
Csp6I	GTAC	2 cut(s)	165, 206
CspI	CGGWCCG	2 cut(s)	7, 31
CviAII	CATG	3 cut(s)	119, 191, 510
CviQI	GTAC	2 cut(s)	165, 206
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
DriI	GACNNNNNGTC	1 cut(s)	19
Eam1105I	GACNNNNNGTC	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	234
Eco47I	GGWCC	3 cut(s)	7, 31, 92
Eco57I	CTGAAG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	3 cut(s)	122, 194, 513
FatI	CATG	3 cut(s)	118, 190, 509
FokI	GGATG	1 cut(s)	418
FspBI	CTAG	1 cut(s)	132
HapII	CCGG	2 cut(s)	29, 34
Hin1II	CATG	3 cut(s)	122, 194, 513
HincII	GTYRAC	1 cut(s)	442
HindII	GTYRAC	1 cut(s)	442
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	2 cut(s)	104, 251
HpaII	CCGG	2 cut(s)	29, 34
HphI	GGTGA	2 cut(s)	220, 389
Hpy166II	GTNNAC	2 cut(s)	208, 442
Hpy188III	TCNNGA	4 cut(s)	34, 293, 304, 337
Hpy8I	GTNNAC	2 cut(s)	208, 442
Hpy99I	CGWCG	1 cut(s)	326
HpyCH4III	ACNGT	3 cut(s)	50, 290, 439
HpyCH4V	TGCA	5 cut(s)	188, 222, 431, 449, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 254
Hsp92II	CATG	3 cut(s)	122, 194, 513
Kpn2I	TCCGGA	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	9 cut(s)	42, 47, 86, 113, 128, 168, 306, 342, 363
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	1 cut(s)	132
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	329
MluCI	AATT	3 cut(s)	217, 372, 406
MnlI	CCTC	4 cut(s)	73, 187, 206, 284
MroI	TCCGGA	1 cut(s)	33
MseI	TTAA	1 cut(s)	398
MspI	CCGG	2 cut(s)	29, 34
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	2 cut(s)	245, 254
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	3 cut(s)	122, 194, 513
NlaIV	GGNNCC	1 cut(s)	27
NspI	RCATGY	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	104, 251
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	3 cut(s)	7, 31, 92
RsaI	GTAC	2 cut(s)	166, 207
RsaNI	GTAC	2 cut(s)	165, 206
Rsr2I	CGGWCCG	2 cut(s)	7, 31
RsrII	CGGWCCG	2 cut(s)	7, 31
SaqAI	TTAA	1 cut(s)	398
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	3 cut(s)	7, 31, 92
ScrFI	CCNGG	1 cut(s)	101
SetI	ASST	5 cut(s)	97, 186, 198, 352, 418
SfaNI	GCATC	1 cut(s)	440
SinI	GGWCC	3 cut(s)	7, 31, 92
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	3 cut(s)	217, 372, 406
SsiI	CCGC	2 cut(s)	5, 10
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	234
TaaI	ACNGT	3 cut(s)	50, 290, 439
TaqI	TCGA	3 cut(s)	78, 85, 336
TasI	AATT	3 cut(s)	217, 372, 406
TfiI	GAWTC	2 cut(s)	104, 251
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
VpaK11BI	GGWCC	3 cut(s)	7, 31, 92
XceI	RCATGY	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.