Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0019854

Physical Location & Seq

Genomic Coordinates Reverse (-)

3839827 .. 3841802

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG020100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCACAGGTAAAGGTACAAACTTGGGTAGATGGTGTTGAGGCTTGTGAGTTTGTTGGTGTGGGTGCTAGATTTGGAACTACCATTGAATCAAAAGAGAATAAGGCAAACCAAATTCACCTTATACTTTCAAACCCTCGAGATTGCTGCAGTCCACCGAAAAATAAGATTGCTCGGGATGTCATTATGGTCGACCGAGGCAACTGTAAATTCACAACCAAAGCAAATTATGCCCAAGCTGCTAATGCCTCAGCTATCCTTATTATAAATAACCAGAAAGAACTTTACAAGATGGTGTGTGAGCCAGATGAAACTGCTCTAGATATACACATACCTGCTATCATGCTCCCACAGGATGCTGGCGTGACCTTGGAGAAAATGTTAATGAGCAATTCAGTGGTGTCTGTGCAGTTGTACTCTCCACAACGGCCAGTGGTTGACATTGCGGAAGTATTTTTATGGCTGATGGCAGTTGGCACCATCTTGTGCGCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005798 GO:0012505 GO:0016020 GO:0016021 GO:0030176 GO:0030660 GO:0031090 GO:0031224 GO:0031227 GO:0031410 GO:0031982 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071458 GO:0071556 GO:0097708 GO:0098552 GO:0098553 GO:0098554 GO:0098562 GO:0098588 GO:0098805 GO:0098827 GO:0098852

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_A22B

Protein Analysis

178

Amino Acids

19.48

Weight (kDa)

5.92

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	60 - 136	3.2e-12	PA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0019854)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0355401
rosa_multiflora	Rmu_sc0023233.1_g000001
rosa_roxburghii	Rroxscaffold_4G00300300
rosa_samantha	Rh4AG020100
rosa_wichuraiana	Rw1G017070 Rw1G022980 Rw7G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
Acc16I	TGCGCA	1 cut(s)	529
Acc36I	ACCTGC	1 cut(s)	382
AccB1I	GGYRCC	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	485
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	2 cut(s)	153, 248
AfaI	GTAC	2 cut(s)	57, 455
AgsI	TTSAA	2 cut(s)	128, 171
AluBI	AGCT	2 cut(s)	278, 293
AluI	AGCT	2 cut(s)	278, 293
Ama87I	CYCGRG	2 cut(s)	177, 213
AoxI	GGCC	2 cut(s)	19, 467
ApeKI	GCWGC	2 cut(s)	186, 278
ApoI	RAATTY	2 cut(s)	153, 248
AspLEI	GCGC	1 cut(s)	530
AsuHPI	GGTGA	1 cut(s)	149
AvaI	CYCGRG	2 cut(s)	177, 213
BanI	GGYRCC	1 cut(s)	515
BbvCI	CCTCAGC	1 cut(s)	289
BbvI	GCAGC	2 cut(s)	173, 265
BccI	CCATC	4 cut(s)	65, 325, 499, 527
BceAI	ACGGC	1 cut(s)	482
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BfaI	CTAG	2 cut(s)	108, 359
BfmI	CTRYAG	1 cut(s)	187
BfuAI	ACCTGC	1 cut(s)	382
BisI	GCNGC	2 cut(s)	187, 279
BlsI	GCNGC	2 cut(s)	188, 280
BmeT110I	CYCGRG	2 cut(s)	177, 213
BmiI	GGNNCC	1 cut(s)	517
BmsI	GCATC	1 cut(s)	385
Bpu10I	CCTNAGC	1 cut(s)	289
BsaJI	CCNNGG	2 cut(s)	235, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bse1I	ACTGG	1 cut(s)	470
Bse3DI	GCAATG	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	235, 408
BseGI	GGATG	2 cut(s)	223, 400
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	470
BseXI	GCAGC	2 cut(s)	173, 265
BsgI	GTGCAG	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	2 cut(s)	21, 469
BshNI	GGYRCC	1 cut(s)	515
BsiEI	CGRYCG	1 cut(s)	235
BsiHKCI	CYCGRG	2 cut(s)	177, 213
BsnI	GGCC	2 cut(s)	21, 469
BsoBI	CYCGRG	2 cut(s)	177, 213
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	2 cut(s)	21, 469
BspCNI	CTCAG	1 cut(s)	302
BspLI	GGNNCC	1 cut(s)	517
BspMAI	CTGCAG	1 cut(s)	191
BspMI	ACCTGC	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	515
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	2 cut(s)	235, 408
BssT1I	CCWWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	223, 400
BstHHI	GCGC	1 cut(s)	530
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 278, 284
BstSFI	CTRYAG	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	173, 265
BsuRI	GGCC	2 cut(s)	21, 469
BtsCI	GGATG	2 cut(s)	223, 400
BtsIMutI	CAGTG	2 cut(s)	441, 477
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	400
CfoI	GCGC	1 cut(s)	530
Csp6I	GTAC	2 cut(s)	56, 454
CviAII	CATG	2 cut(s)	29, 382
CviJI	RGCY	7 cut(s)	21, 83, 278, 293, 343, 469, 502
CviKI_1	RGCY	7 cut(s)	21, 83, 278, 293, 343, 469, 502
CviQI	GTAC	2 cut(s)	56, 454
DdeI	CTNAG	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	467
Eco130I	CCWWGG	1 cut(s)	408
Eco88I	CYCGRG	2 cut(s)	177, 213
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	32, 385
FaiI	YATR	9 cut(s)	30, 164, 227, 270, 305, 365, 371, 383, 499
FatI	CATG	2 cut(s)	28, 381
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	187, 279
FokI	GGATG	2 cut(s)	230, 407
Fsp4HI	GCNGC	2 cut(s)	187, 279
FspAI	RTGCGCAY	1 cut(s)	529
FspBI	CTAG	2 cut(s)	108, 359
FspI	TGCGCA	1 cut(s)	529
GlaI	GCGC	1 cut(s)	529
GluI	GCNGC	2 cut(s)	187, 279
HaeIII	GGCC	2 cut(s)	21, 469
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	2 cut(s)	32, 385
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HincII	GTYRAC	2 cut(s)	232, 478
HindII	GTYRAC	2 cut(s)	232, 478
HinfI	GANTC	1 cut(s)	128
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	3 cut(s)	194, 232, 478
Hpy188III	TCNNGA	3 cut(s)	179, 215, 359
Hpy8I	GTNNAC	3 cut(s)	194, 232, 478
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	3 cut(s)	28, 189, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 278, 284
HpyF3I	CTNAG	1 cut(s)	289
Hsp92II	CATG	2 cut(s)	32, 385
HspAI	GCGC	1 cut(s)	528
LmnI	GCTCC	1 cut(s)	390
LpnPI	CCDG	8 cut(s)	3, 32, 326, 357, 377, 384, 387, 483
Lsp1109I	GCAGC	2 cut(s)	173, 265
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	2 cut(s)	108, 359
MaeIII	GTNAC	1 cut(s)	403
MboII	GAAGA	3 cut(s)	21, 30, 33
MluCI	AATT	4 cut(s)	153, 248, 265, 430
MnlI	CCTC	4 cut(s)	73, 186, 230, 298
MseI	TTAA	2 cut(s)	422, 535
MwoI	GCNNNNNNNGC	3 cut(s)	269, 278, 284
NlaIII	CATG	2 cut(s)	32, 385
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	403
NsbI	TGCGCA	1 cut(s)	529
PaeR7I	CTCGAG	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	188, 280
PsiI	TTATAA	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	517
PstI	CTGCAG	1 cut(s)	191
RsaI	GTAC	2 cut(s)	57, 455
RsaNI	GTAC	2 cut(s)	56, 454
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	422, 535
SatI	GCNGC	2 cut(s)	187, 279
SetI	ASST	8 cut(s)	17, 51, 57, 162, 280, 295, 376, 410
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	187
Sfr274I	CTCGAG	1 cut(s)	177
SlaI	CTCGAG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	177
SmoI	CTYRAG	1 cut(s)	177
Sse9I	AATT	4 cut(s)	153, 248, 265, 430
SsiI	CCGC	1 cut(s)	485
SspMI	CTAG	2 cut(s)	108, 359
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	2 cut(s)	178, 231
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	4 cut(s)	153, 248, 265, 430
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	422, 535
Tru9I	TTAA	2 cut(s)	422, 535
TscAI	CASTG	2 cut(s)	441, 477
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	2 cut(s)	186, 278
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	1 cut(s)	363
TspRI	CASTG	2 cut(s)	441, 477
XapI	RAATTY	2 cut(s)	153, 248
XbaI	TCTAGA	1 cut(s)	358
XhoI	CTCGAG	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	108, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.