Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0019386

Physical Location & Seq

Genomic Coordinates Reverse (-)

23260378 .. 23261169

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGACGTCCGATTCGCGCAATGGATCACAACGCCAACGCCGAGAAATTCAACCGCCGCCGCCGCCCCCGAAGAAATCGAGGATGACGTTGAAGCAACATTCAAATCCATAGGCACGCCTTCGTTTCCCTCAAACCCTTCAATTCAAGCCGAGAAAATCCAAGTACTCCAAGAACCCCGTTCGCACCCGGCGTTTCCCCGAGTCATCAAACACACGAAGCTCTCGAGTATCTCCAAAGAGAAGCGGAAATCGACCGGAAAGCCAACATCTCCGTCGGTGACGACAGCTCTCTTTGTGAAATGGGCATCATCGGTGTTTGATCAAATGCCCGAGAGAGATGGTTTTGCATGGACTATAATGTTTTCTTCTCTTACTCGTGTAGGGAATATGATTTCGGTGACGACATTGTTCGATGAGATGATAGAAAGGTGTACAACTACTTCGAATACTATGATCGACGGCATGAAAGGTGCAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRS1_YhbY

Protein Analysis

160

Amino Acids

17.73

Weight (kDa)

7.87

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019386)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0105281
rosa_laevigata	RLG00000021148
rosa_multiflora	Rmu_sc0000994.1_g000010
rosa_roxburghii	Rroxscaffold_2G00090650 Rroxscaffold_4G00302920
rosa_samantha	Rh2CG439100 Rh7AG285600 Rh7CG304600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	9
AccII	CGCG	1 cut(s)	17
AciI	CCGC	5 cut(s)	54, 57, 60, 63, 244
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	46
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	2 cut(s)	165, 433
AgsI	TTSAA	5 cut(s)	51, 92, 103, 141, 146
AluBI	AGCT	2 cut(s)	220, 287
AluI	AGCT	2 cut(s)	220, 287
AlwI	GGATC	1 cut(s)	32
Ama87I	CYCGRG	3 cut(s)	198, 223, 329
ApoI	RAATTY	1 cut(s)	46
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	19
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	289, 409
AsuII	TTCGAA	1 cut(s)	443
AvaI	CYCGRG	3 cut(s)	198, 223, 329
BarI	GAAGNNNNNNTAC	2 cut(s)	424, 456
BauI	CACGAG	1 cut(s)	375
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	475
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	188
BisI	GCNGC	3 cut(s)	57, 60, 63
BlsI	GCNGC	3 cut(s)	58, 61, 64
BmcAI	AGTACT	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	188
BmeT110I	CYCGRG	3 cut(s)	198, 223, 329
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	254
Bse3DI	GCAATG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	255
BsiHKCI	CYCGRG	3 cut(s)	198, 223, 329
BsiSI	CCGG	2 cut(s)	188, 255
BsoBI	CYCGRG	3 cut(s)	198, 223, 329
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1407I	TGTACA	1 cut(s)	431
Bsp143I	GATC	3 cut(s)	24, 319, 453
BspACI	CCGC	5 cut(s)	54, 57, 60, 63, 244
BspFNI	CGCG	1 cut(s)	17
BspPI	GGATC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	431
BssMI	GATC	3 cut(s)	24, 319, 453
BssNI	GRCGYC	1 cut(s)	6
BssSI	CACGAG	1 cut(s)	375
Bst2BI	CACGAG	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	6
BstAUI	TGTACA	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	88
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	3 cut(s)	27, 322, 456
BstMBI	GATC	3 cut(s)	24, 319, 453
BstMCI	CGRYCG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	88
Cac8I	GCNNGC	1 cut(s)	116
CfoI	GCGC	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	164, 432
CviAII	CATG	2 cut(s)	348, 463
CviJI	RGCY	4 cut(s)	149, 220, 262, 287
CviKI_1	RGCY	4 cut(s)	149, 220, 262, 287
CviQI	GTAC	2 cut(s)	164, 432
DpnI	GATC	3 cut(s)	26, 321, 455
DpnII	GATC	3 cut(s)	24, 319, 453
Eco88I	CYCGRG	3 cut(s)	198, 223, 329
FaeI	CATG	2 cut(s)	351, 466
FaiI	YATR	6 cut(s)	110, 349, 356, 389, 452, 464
FatI	CATG	2 cut(s)	347, 462
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	3 cut(s)	57, 60, 63
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	3 cut(s)	57, 60, 63
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	3 cut(s)	57, 60, 63
HapII	CCGG	2 cut(s)	188, 255
HhaI	GCGC	1 cut(s)	19
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	351, 466
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	2 cut(s)	12, 201
HpaII	CCGG	2 cut(s)	188, 255
HphI	GGTGA	2 cut(s)	289, 409
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	2 cut(s)	277, 461
HpyAV	CCTTC	2 cut(s)	129, 147
HpyCH4IV	ACGT	2 cut(s)	6, 87
HpyCH4V	TGCA	2 cut(s)	347, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpySE526I	ACGT	2 cut(s)	6, 87
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	351, 466
HspAI	GCGC	1 cut(s)	17
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	24, 319, 453
LpnPI	CCDG	2 cut(s)	201, 268
LweI	GCATC	1 cut(s)	314
MaeII	ACGT	2 cut(s)	6, 87
MaeIII	GTNAC	2 cut(s)	277, 397
MalI	GATC	3 cut(s)	26, 321, 455
MboI	GATC	3 cut(s)	24, 319, 453
MboII	GAAGA	2 cut(s)	83, 357
MluCI	AATT	2 cut(s)	46, 141
MlyI	GAGTC	1 cut(s)	210
MnlI	CCTC	2 cut(s)	73, 139
MspI	CCGG	2 cut(s)	188, 255
MspR9I	CCNGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	3 cut(s)	24, 319, 453
NlaIII	CATG	2 cut(s)	351, 466
NmeAIII	GCCGAG	2 cut(s)	66, 175
NmuCI	GTSAC	2 cut(s)	277, 397
NspV	TTCGAA	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	4 cut(s)	38, 84, 188, 221
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	3 cut(s)	58, 61, 64
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
RsaI	GTAC	2 cut(s)	165, 433
RsaNI	GTAC	2 cut(s)	164, 432
SatI	GCNGC	3 cut(s)	57, 60, 63
Sau3AI	GATC	3 cut(s)	24, 319, 453
ScaI	AGTACT	1 cut(s)	165
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	6 cut(s)	9, 90, 222, 289, 431, 472
SfaNI	GCATC	1 cut(s)	314
Sfr274I	CTCGAG	1 cut(s)	223
SfuI	TTCGAA	1 cut(s)	443
SlaI	CTCGAG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	2 cut(s)	46, 141
SsiI	CCGC	5 cut(s)	54, 57, 60, 63, 244
StyD4I	CCNGG	1 cut(s)	186
TaiI	ACGT	2 cut(s)	9, 90
TaqI	TCGA	6 cut(s)	78, 224, 251, 411, 443, 456
TasI	AATT	2 cut(s)	46, 141
TatI	WGTACW	2 cut(s)	163, 431
TauI	GCSGC	3 cut(s)	59, 62, 65
TfiI	GAWTC	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	277, 397
Tsp45I	GTSAC	2 cut(s)	277, 397
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	261
XapI	RAATTY	1 cut(s)	46
XhoI	CTCGAG	1 cut(s)	223
ZraI	GACGTC	1 cut(s)	7
ZrmI	AGTACT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.