Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010503

Physical Location & Seq

Genomic Coordinates Forward (+)

48049172 .. 48057202

Gene Structure 8031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGCTTGTCGGTTGGGTGGCAAAGCCCAACAAGCAGTGGGTTGTGGATTTCGGCTACACGGGCGGGTTTGCTGCTAATGCTTCCCCGAGAGGGTTTTCTAGGCGTCCCTACGACACTCTTCGGTATTTCTCGGTCTCGGAAGGACTAGAGAACTTGATACGCTCAAAAACTCTGGTCCATTCTCTTCAATCTGGGTGGAGTAGTGCCGACTCCCAAGTATTTGCCGAAGCCCAACTATTTCATGGAGGAGGATGGTTTCATGTATGCTTCCACAGCATTGGTCATGGTGTGCCAGCTGTACTTTCTCTTGAAATTCTACAAATTGATGATAAATCTTACGCTTTCACTGCAGAATCGAGTGAATACATTCTCAAGAATGTTTCCCGCATTACTTTTGGGGATGATGTAGCACCCAAGTTCAGTTCTTATTTCGGAGAAAAGCTTGATATTTTCAAGCGGAGTGGGGGTGTTATACTGCTTTGGTACTTAACACAACTATTTGCTGTAAATGGGACGAGTTTGACAATAACCTTGCGACCGACGAATGGTGACCATGCTTCAATAGCTGCAATCGAGACATTCCAGATTATAGTTCCCAAGTCAAAAACATTACCAGATGAATTTGAGGCATTACAAGCATTCAAGACAGCCCTACGGATTCCTGCTTCGGTGGGGTGGAATAGCGATCCCTGTATACCCCACCAACACCCATGGAGTGGCATAGCTTGCCATTTTGATAAGAATACAAGCAAATGGGTGATTCATGCATTAAATCTGAGTAAAAGTATCATCCATGGAGCCATTCCATCCTCTCTTGGAGGAATACCAACTTTGCAAGTCTTGGATTTGTCATACAATTCCTTCAATGGATCAATCCCTGAAACACTCGGACAGTTGACCTCATTAGAAGAACTGTTTCTTAACAGCAATATGCTTACTGGCAGGGTTCCAGCCGCTTTGGGAGGAATGCTGGCTAGATTCAACTTTAGTGTCAATCCAGGCCTTGGTGGAATACCTGGCACACACAGGATGCACCTTACCAGTGGCATAAGGATTGCAATTGGATTTGGGGTTGCAGGGGCTGTCTCTTTGATTCTTGCGTGTTTCCTATTCACTTGCAAAAGGAGGCAGCGCCATATGAGGCTAGCACAGCCAATGGCTGTACTTAAAGTGACGACCATCCAAACCAATGAAGGATCTAAACATGCAGGAAGTCAGAAGATCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin_like

Protein Analysis

409

Amino Acids

44.6

Weight (kDa)

9.24

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	61 - 135	1.8e-07	Malectin-like domain
LRR_8	PF13855	256 - 312	4.9e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28340
fragaria_vesca	FvH4_3g08800 FvH4_3g08800 FvH4_3g08800 FvH4_3g08800
malus_domestica	MD10G1291000.v1.1
prunus_persica	Prupe.4G051100_v2.0.a1
pyrus_communis	pycom10g24320
rosa_chinensis	RchiOBHm_Chr5g0008961
rosa_laevigata	RLG00000031620
rosa_multiflora	Rmu_sc0004677.1_g000022
rosa_roxburghii	Rroxscaffold_1G00067060 Rroxscaffold_1G00067690 Rroxscaffold_4G00319870
rosa_rugosa	Rorug04G0440600 Rorug04G0440700
rosa_samantha	Rh5AG069300 Rh5BG066100 Rh5CG077200 Rh5DG065200
rosa_wichuraiana	Rw5G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	716, 1004
AccI	GTMKAC	1 cut(s)	694
AciI	CCGC	4 cut(s)	63, 385, 457, 954
AclWI	GGATC	4 cut(s)	680, 877, 1204, 1216
AcsI	RAATTY	2 cut(s)	312, 620
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	3 cut(s)	300, 485, 1164
AfiI	CCNNNNNNNGG	4 cut(s)	90, 545, 716, 1004
AgsI	TTSAA	7 cut(s)	188, 311, 454, 561, 643, 865, 982
AjnI	CCWGG	2 cut(s)	997, 1015
AluBI	AGCT	4 cut(s)	296, 442, 566, 725
AluI	AGCT	4 cut(s)	296, 442, 566, 725
Alw26I	GTCTC	3 cut(s)	139, 569, 1090
AlwI	GGATC	4 cut(s)	680, 877, 1204, 1216
AlwNI	CAGNNNCTG	1 cut(s)	1082
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	1000
ApeKI	GCWGC	3 cut(s)	71, 566, 1129
ApoI	RAATTY	2 cut(s)	312, 620
Asp700I	GAANNNNTTC	2 cut(s)	366, 915
AspLEI	GCGC	1 cut(s)	1134
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	560, 769
AsuNHI	GCTAGC	1 cut(s)	1144
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	175
BbvI	GCAGC	3 cut(s)	58, 553, 1141
BccI	CCATC	3 cut(s)	246, 814, 1187
BciT130I	CCWGG	2 cut(s)	999, 1017
BcoDI	GTCTC	3 cut(s)	139, 569, 1090
BfaI	CTAG	4 cut(s)	99, 146, 975, 1145
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	1135
BisI	GCNGC	4 cut(s)	72, 567, 954, 1130
BlsI	GCNGC	4 cut(s)	73, 568, 955, 1131
Bme1390I	CCNGG	2 cut(s)	999, 1017
Bme18I	GGWCC	1 cut(s)	175
BmeT110I	CYCGRG	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	2 cut(s)	799, 948
BmrFI	CCNGG	2 cut(s)	999, 1017
BmsI	GCATC	1 cut(s)	1020
BmtI	GCTAGC	1 cut(s)	1148
BpuEI	CTTGAG	1 cut(s)	356
BsaHI	GRCGYC	1 cut(s)	103
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	3 cut(s)	710, 793, 1003
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 545, 716, 1004
Bse1I	ACTGG	3 cut(s)	943, 1041, 1225
BseBI	CCWGG	2 cut(s)	999, 1017
BseDI	CCNNGG	3 cut(s)	710, 793, 1003
BseGI	GGATG	6 cut(s)	257, 406, 789, 806, 1035, 1179
BseLI	CCNNNNNNNGG	4 cut(s)	90, 545, 716, 1004
BseMII	CTCAG	1 cut(s)	767
BseNI	ACTGG	3 cut(s)	943, 1041, 1225
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	58, 553, 1141
Bsh1285I	CGRYCG	1 cut(s)	539
BshFI	GGCC	1 cut(s)	1002
BsiEI	CGRYCG	1 cut(s)	539
BsiHKCI	CYCGRG	1 cut(s)	85
BslFI	GGGAC	2 cut(s)	90, 526
BslI	CCNNNNNNNGG	4 cut(s)	90, 545, 716, 1004
BsmAI	GTCTC	3 cut(s)	139, 569, 1090
BsmFI	GGGAC	2 cut(s)	90, 526
BsmI	GAATGC	2 cut(s)	638, 972
BsnI	GGCC	1 cut(s)	1002
Bso31I	GGTCTC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	85
Bsp143I	GATC	4 cut(s)	685, 869, 1196, 1221
Bsp19I	CCATGG	2 cut(s)	710, 793
BspACI	CCGC	4 cut(s)	63, 385, 457, 954
BspANI	GGCC	1 cut(s)	1002
BspCNI	CTCAG	1 cut(s)	768
BspLI	GGNNCC	2 cut(s)	799, 948
BspMAI	CTGCAG	1 cut(s)	352
BspOI	GCTAGC	1 cut(s)	1148
BspPI	GGATC	4 cut(s)	680, 877, 1204, 1216
BspTNI	GGTCTC	1 cut(s)	139
BsrI	ACTGG	3 cut(s)	943, 1041, 1225
BssECI	CCNNGG	3 cut(s)	710, 793, 1003
BssMI	GATC	4 cut(s)	685, 869, 1196, 1221
BssNAI	GTATAC	1 cut(s)	695
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	3 cut(s)	710, 793, 1003
Bst1107I	GTATAC	1 cut(s)	695
Bst2UI	CCWGG	2 cut(s)	999, 1017
Bst4CI	ACNGT	2 cut(s)	894, 915
Bst6I	CTCTTC	2 cut(s)	123, 189
BstACI	GRCGYC	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	726
BstC8I	GCNNGC	4 cut(s)	294, 727, 972, 1146
BstDEI	CTNAG	1 cut(s)	776
BstDSI	CCRYGG	2 cut(s)	710, 793
BstEII	GGTNACC	1 cut(s)	548
BstF5I	GGATG	6 cut(s)	257, 406, 789, 806, 1035, 1179
BstH2I	RGCGCY	1 cut(s)	1135
BstHHI	GCGC	1 cut(s)	1134
BstKTI	GATC	4 cut(s)	688, 872, 1199, 1224
BstMAI	GTCTC	3 cut(s)	139, 569, 1090
BstMBI	GATC	4 cut(s)	685, 869, 1196, 1221
BstMCI	CGRYCG	1 cut(s)	539
BstMWI	GCNNNNNNNGC	9 cut(s)	31, 60, 77, 273, 347, 563, 635, 726, 1150
BstNI	CCWGG	2 cut(s)	999, 1017
BstNSI	RCATGY	1 cut(s)	1208
BstPI	GGTNACC	1 cut(s)	548
BstSCI	CCNGG	2 cut(s)	997, 1015
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	58, 553, 1141
BstX2I	RGATCY	2 cut(s)	1196, 1221
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstYI	RGATCY	2 cut(s)	1196, 1221
BstZ17I	GTATAC	1 cut(s)	695
BsuRI	GGCC	1 cut(s)	1002
BtgI	CCRYGG	2 cut(s)	710, 793
BtsCI	GGATG	6 cut(s)	257, 406, 789, 806, 1035, 1179
BtsI	GCAGTG	2 cut(s)	41, 345
BtsIMutI	CAGTG	3 cut(s)	41, 345, 1048
Cac8I	GCNNGC	4 cut(s)	294, 727, 972, 1146
CaiI	CAGNNNCTG	1 cut(s)	1082
CfoI	GCGC	1 cut(s)	1134
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	299, 484, 1163
CspCI	CAANNNNNGTGG	4 cut(s)	176, 211, 442, 477
CviAII	CATG	8 cut(s)	242, 260, 284, 554, 711, 764, 794, 1205
CviQI	GTAC	3 cut(s)	299, 484, 1163
DdeI	CTNAG	1 cut(s)	776
DpnI	GATC	4 cut(s)	687, 871, 1198, 1223
DpnII	GATC	4 cut(s)	685, 869, 1196, 1221
Eam1104I	CTCTTC	2 cut(s)	123, 189
EarI	CTCTTC	2 cut(s)	123, 189
Eco130I	CCWWGG	3 cut(s)	710, 793, 1003
Eco147I	AGGCCT	1 cut(s)	1002
Eco31I	GGTCTC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	175
Eco88I	CYCGRG	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	548
EcoO65I	GGTNACC	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	997, 1015
EcoT14I	CCWWGG	3 cut(s)	710, 793, 1003
EcoT22I	ATGCAT	1 cut(s)	769
ErhI	CCWWGG	3 cut(s)	710, 793, 1003
FaeI	CATG	8 cut(s)	245, 263, 287, 557, 714, 767, 797, 1208
FaqI	GGGAC	2 cut(s)	90, 526
FatI	CATG	8 cut(s)	241, 259, 283, 553, 710, 763, 793, 1204
FauI	CCCGC	2 cut(s)	56, 392
FauNDI	CATATG	1 cut(s)	1137
FblI	GTMKAC	1 cut(s)	694
Fnu4HI	GCNGC	4 cut(s)	72, 567, 954, 1130
FokI	GGATG	6 cut(s)	264, 413, 776, 793, 1042, 1166
Fsp4HI	GCNGC	4 cut(s)	72, 567, 954, 1130
FspBI	CTAG	4 cut(s)	99, 146, 975, 1145
GlaI	GCGC	1 cut(s)	1133
GluI	GCNGC	4 cut(s)	72, 567, 954, 1130
HaeII	RGCGCY	1 cut(s)	1135
HaeIII	GGCC	1 cut(s)	1002
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	1134
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	8 cut(s)	245, 263, 287, 557, 714, 767, 797, 1208
Hin6I	GCGC	1 cut(s)	1132
HinP1I	GCGC	1 cut(s)	1132
HincII	GTYRAC	1 cut(s)	897
HindII	GTYRAC	1 cut(s)	897
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	6 cut(s)	209, 353, 658, 760, 978, 1093
HphI	GGTGA	2 cut(s)	560, 769
Hpy166II	GTNNAC	2 cut(s)	695, 897
Hpy188I	TCNGA	5 cut(s)	139, 434, 777, 890, 1218
Hpy188III	TCNNGA	5 cut(s)	308, 373, 574, 583, 643
Hpy8I	GTNNAC	2 cut(s)	695, 897
Hpy99I	CGWCG	1 cut(s)	544
HpyAV	CCTTC	3 cut(s)	134, 871, 1187
HpyCH4III	ACNGT	2 cut(s)	894, 915
HpyCH4V	TGCA	9 cut(s)	350, 569, 767, 835, 1033, 1058, 1076, 1119, 1208
HpyF10VI	GCNNNNNNNGC	9 cut(s)	31, 60, 77, 273, 347, 563, 635, 726, 1150
HpyF3I	CTNAG	1 cut(s)	776
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	8 cut(s)	245, 263, 287, 557, 714, 767, 797, 1208
HspAI	GCGC	1 cut(s)	1132
Kzo9I	GATC	4 cut(s)	685, 869, 1196, 1221
LmnI	GCTCC	1 cut(s)	797
Lsp1109I	GCAGC	3 cut(s)	58, 553, 1141
LweI	GCATC	1 cut(s)	1020
MaeI	CTAG	4 cut(s)	99, 146, 975, 1145
MaeIII	GTNAC	2 cut(s)	548, 1171
MalI	GATC	4 cut(s)	687, 871, 1198, 1223
MboI	GATC	4 cut(s)	685, 869, 1196, 1221
MboII	GAAGA	3 cut(s)	110, 176, 920
MfeI	CAATTG	1 cut(s)	1059
MflI	RGATCY	2 cut(s)	1196, 1221
MluCI	AATT	5 cut(s)	312, 321, 620, 856, 1059
MlyI	GAGTC	1 cut(s)	203
Mph1103I	ATGCAT	1 cut(s)	769
MroXI	GAANNNNTTC	2 cut(s)	366, 915
MseI	TTAA	4 cut(s)	488, 770, 921, 1167
MspA1I	CMGCKG	1 cut(s)	296
MspR9I	CCNGG	2 cut(s)	999, 1017
MunI	CAATTG	1 cut(s)	1059
Mva1269I	GAATGC	2 cut(s)	638, 972
MvaI	CCWGG	2 cut(s)	999, 1017
MwoI	GCNNNNNNNGC	9 cut(s)	31, 60, 77, 273, 347, 563, 635, 726, 1150
NcoI	CCATGG	2 cut(s)	710, 793
NdeI	CATATG	1 cut(s)	1137
NdeII	GATC	4 cut(s)	685, 869, 1196, 1221
NheI	GCTAGC	1 cut(s)	1144
NlaIII	CATG	8 cut(s)	245, 263, 287, 557, 714, 767, 797, 1208
NlaIV	GGNNCC	2 cut(s)	799, 948
NmuCI	GTSAC	2 cut(s)	548, 1171
NsiI	ATGCAT	1 cut(s)	769
NspI	RCATGY	1 cut(s)	1208
PceI	AGGCCT	1 cut(s)	1002
PctI	GAATGC	2 cut(s)	638, 972
PdmI	GAANNNNTTC	2 cut(s)	366, 915
PfeI	GAWTC	5 cut(s)	353, 658, 760, 978, 1093
PflMI	CCANNNNNTGG	2 cut(s)	716, 1004
PkrI	GCNGC	4 cut(s)	73, 568, 955, 1131
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
Psp6I	CCWGG	2 cut(s)	997, 1015
PspEI	GGTNACC	1 cut(s)	548
PspGI	CCWGG	2 cut(s)	997, 1015
PspN4I	GGNNCC	2 cut(s)	799, 948
PspPI	GGNCC	1 cut(s)	175
PstI	CTGCAG	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	1082
PsuI	RGATCY	2 cut(s)	1196, 1221
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	3 cut(s)	300, 485, 1164
RsaNI	GTAC	3 cut(s)	299, 484, 1163
SaqAI	TTAA	4 cut(s)	488, 770, 921, 1167
SatI	GCNGC	4 cut(s)	72, 567, 954, 1130
Sau3AI	GATC	4 cut(s)	685, 869, 1196, 1221
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	2 cut(s)	999, 1017
SetI	ASST	8 cut(s)	298, 444, 533, 568, 727, 902, 1018, 1038
SfaNI	GCATC	1 cut(s)	1020
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	5 cut(s)	312, 321, 620, 856, 1059
SseBI	AGGCCT	1 cut(s)	1002
SsiI	CCGC	4 cut(s)	63, 385, 457, 954
SspMI	CTAG	4 cut(s)	99, 146, 975, 1145
StuI	AGGCCT	1 cut(s)	1002
StyD4I	CCNGG	2 cut(s)	997, 1015
StyI	CCWWGG	3 cut(s)	710, 793, 1003
TaaI	ACNGT	2 cut(s)	894, 915
TaqI	TCGA	2 cut(s)	356, 573
TaqII	GACCGA	2 cut(s)	121, 553
TasI	AATT	5 cut(s)	312, 321, 620, 856, 1059
TatI	WGTACW	2 cut(s)	298, 1162
TauI	GCSGC	1 cut(s)	956
TfiI	GAWTC	5 cut(s)	353, 658, 760, 978, 1093
Tru1I	TTAA	4 cut(s)	488, 770, 921, 1167
Tru9I	TTAA	4 cut(s)	488, 770, 921, 1167
TscAI	CASTG	3 cut(s)	41, 352, 1048
TseFI	GTSAC	2 cut(s)	548, 1171
TseI	GCWGC	3 cut(s)	71, 566, 1129
Tsp45I	GTSAC	2 cut(s)	548, 1171
TspDTI	ATGAA	5 cut(s)	230, 248, 633, 752, 1206
TspGWI	ACGGA	1 cut(s)	670
TspRI	CASTG	3 cut(s)	41, 352, 1048
Van91I	CCANNNNNTGG	2 cut(s)	716, 1004
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	2 cut(s)	312, 620
XceI	RCATGY	1 cut(s)	1208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	694
XmnI	GAANNNNTTC	2 cut(s)	366, 915
XspI	CTAG	4 cut(s)	99, 146, 975, 1145
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.