Rorug04G0440700

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
59745745 .. 59749773
4029 bp
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UTR
Exon/CDS
Intron
Rorug04G0440700.1

Sequence Viewer

Length: 534 bp
ATGTTTCAGATGAAAGGGTCAATACAGAAGCCCACCGAACTGGTTGAAGATCTCTACTCTCGATTGGTCGTGGTCCTTTATTCGCTAATCCTTCATCTCATTCCGGTGGTACTGCTCTGCGTCTCAGGCCTCTTTGCCAATCTGGTTCAGGCGTTTTGCTTTGTTTTTATCTGGCCGATCTCAAAGAATGCATACACAAGGATAAACGGCGTCGTTAAAGAACTAGATTGGCTGGTTCTGCTAGGCCTCATTGATCGGTTTGCTGGCGTTAAGATCCTAGTGTGCGCAGAGCAGGAAACGAGTCATTTAAAGGGTAAAGAAGATGAACTTGTCATATCCAATGCTAGGAGTGATACCGATCATCTTGTTGAACTGCGGGTTACCTCAACTCAGCGAATGGCTGAGAGTTCAGTTCTTGATGCACATACTAGTGAAGCTCAAGAATCTAACAGTTACCGGCACTATGTGGCTTCAACAACCGAACGAGATGGTGGGGCAAATGCAAGGAAAATAGAGAGCCGAGAGGCTAGTTGA

Protein Analysis

177

Amino Acids

19.81

Weight (kDa)

5.73

Isoelectric Point (pI)

30.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 286
AciI CCGC 1 cut(s) 376
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 466
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 3 cut(s) 47, 371, 474
AhlI ACTAGT 1 cut(s) 428
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 1 cut(s) 268
AoxI GGCC 3 cut(s) 127, 173, 244
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 73
AvaII GGWCC 1 cut(s) 73
BccI CCATC 1 cut(s) 482
BceAI ACGGC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 127
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 6 cut(s) 224, 242, 278, 345, 429, 528
BglII AGATCT 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 73
BmsI GCATC 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 423
BsaBI GATNNNNATC 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse118I RCCGGY 1 cut(s) 456
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 357
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMII CTCAG 3 cut(s) 138, 393, 404
BseNI ACTGG 1 cut(s) 45
BshFI GGCC 3 cut(s) 129, 175, 246
BsiSI CCGG 2 cut(s) 104, 457
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 1 cut(s) 127
BsmBI CGTCTC 1 cut(s) 127
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 3 cut(s) 129, 175, 246
Bsp143I GATC 5 cut(s) 49, 177, 253, 273, 358
BspACI CCGC 1 cut(s) 376
BspANI GGCC 3 cut(s) 129, 175, 246
BspCNI CTCAG 3 cut(s) 137, 394, 403
BspPI GGATC 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 456
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 456
BssMI GATC 5 cut(s) 49, 177, 253, 273, 358
BssNI GRCGYC 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 3 cut(s) 124, 390, 402
BstEII GGTNACC 1 cut(s) 379
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 5 cut(s) 52, 180, 256, 276, 361
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 5 cut(s) 49, 177, 253, 273, 358
BstMWI GCNNNNNNNGC 2 cut(s) 126, 238
BstPI GGTNACC 1 cut(s) 379
BstX2I RGATCY 2 cut(s) 49, 273
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 2 cut(s) 49, 273
BsuRI GGCC 3 cut(s) 129, 175, 246
Cac8I GCNNGC 1 cut(s) 265
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 456
Cfr13I GGNCC 1 cut(s) 73
CseI GACGC 2 cut(s) 109, 199
Csp6I GTAC 1 cut(s) 110
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 3 cut(s) 124, 390, 402
DpnI GATC 5 cut(s) 51, 179, 255, 275, 360
DpnII GATC 5 cut(s) 49, 177, 253, 273, 358
DraI TTTAAA 1 cut(s) 309
DraIII CACNNNGTG 1 cut(s) 466
EaeI YGGCCR 1 cut(s) 173
Eco147I AGGCCT 2 cut(s) 129, 246
Eco47I GGWCC 1 cut(s) 73
Eco91I GGTNACC 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 379
EcoT22I ATGCAT 1 cut(s) 193
Esp3I CGTCTC 1 cut(s) 127
FaiI YATR 4 cut(s) 193, 335, 426, 465
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FauI CCCGC 1 cut(s) 369
FspBI CTAG 6 cut(s) 224, 242, 278, 345, 429, 528
FspI TGCGCA 1 cut(s) 286
GlaI GCGC 1 cut(s) 286
HaeIII GGCC 3 cut(s) 129, 175, 246
HapII CCGG 2 cut(s) 104, 457
HgaI GACGC 2 cut(s) 109, 199
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 210
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HinfI GANTC 2 cut(s) 301, 443
HpaII CCGG 2 cut(s) 104, 457
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 60, 416, 440
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 452
HpyCH4V TGCA 3 cut(s) 191, 422, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 238
HpyF3I CTNAG 3 cut(s) 124, 390, 402
Hsp92I GRCGYC 1 cut(s) 210
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 5 cut(s) 49, 177, 253, 273, 358
LweI GCATC 1 cut(s) 409
MaeI CTAG 6 cut(s) 224, 242, 278, 345, 429, 528
MaeIII GTNAC 2 cut(s) 379, 452
MalI GATC 5 cut(s) 51, 179, 255, 275, 360
MboI GATC 5 cut(s) 49, 177, 253, 273, 358
MboII GAAGA 2 cut(s) 59, 332
MflI RGATCY 2 cut(s) 49, 273
MlyI GAGTC 1 cut(s) 310
MnlI CCTC 4 cut(s) 140, 257, 394, 517
Mph1103I ATGCAT 1 cut(s) 193
MseI TTAA 3 cut(s) 216, 270, 308
MslI CAYNNNNRTG 2 cut(s) 104, 429
MspI CCGG 2 cut(s) 104, 457
Mva1269I GAATGC 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 126, 238
NdeII GATC 5 cut(s) 49, 177, 253, 273, 358
NsbI TGCGCA 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 193
PceI AGGCCT 2 cut(s) 129, 246
PctI GAATGC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 443
PleI GAGTC 1 cut(s) 309
PpsI GAGTC 1 cut(s) 309
PspEI GGTNACC 1 cut(s) 379
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 2 cut(s) 49, 273
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 2 cut(s) 104, 429
SaqAI TTAA 3 cut(s) 216, 270, 308
Sau3AI GATC 5 cut(s) 49, 177, 253, 273, 358
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 1 cut(s) 310
SetI ASST 2 cut(s) 386, 439
SfaNI GCATC 1 cut(s) 409
SinI GGWCC 1 cut(s) 73
SmiMI CAYNNNNRTG 2 cut(s) 104, 429
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
SpeI ACTAGT 1 cut(s) 428
SseBI AGGCCT 2 cut(s) 129, 246
SsiI CCGC 1 cut(s) 376
SspMI CTAG 6 cut(s) 224, 242, 278, 345, 429, 528
StuI AGGCCT 2 cut(s) 129, 246
TaaI ACNGT 1 cut(s) 452
TaqI TCGA 1 cut(s) 61
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 3 cut(s) 216, 270, 308
Tru9I TTAA 3 cut(s) 216, 270, 308
TspDTI ATGAA 3 cut(s) 26, 83, 339
VpaK11BI GGWCC 1 cut(s) 73
XspI CTAG 6 cut(s) 224, 242, 278, 345, 429, 528
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.