Rw5G006490

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004657
Physical Location & Seq
Reverse (-)
6710910 .. 6713714
2805 bp
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UTR
Exon/CDS
Intron
Rw5G006490.1

Sequence Viewer

Length: 381 bp
ATGGGGAGGATTTTCCTGGTTGAATTGGAAGGCAGAACTTACAGATGCCAATACTGTGACAGCCCTCTTGCTCTGGCCGACGATGTCCTCTCTCGGTCTTTCAACTGCCGTCGAGGGAGGGCATATCTGTTCAGCAACGTGGTGAATATAACGCTTGGTCCTGAGGAAGAGAGGCTAATGCTTTCTGGTTTGCATACTGTAGAAGATATTTTTTGTGTCTGCTGCGGACAGATTCTTGGCTGGAAATATGTAATTGCACATGACAAAAACCAAAAGTACAAGGAAGGAAAGTTTGTGCTAGAGAGATGGAGGATAGAGGAGGATGTAGCAGAGGAATTCAATCTGGATACTCGCCCAGGTTCAAGTGATGAAATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

126

Amino Acids

14.58

Weight (kDa)

5.07

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 106 2.3e-10 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 75
AcsI RAATTY 2 cut(s) 335, 372
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 4 cut(s) 23, 103, 340, 363
AjnI CCWGG 2 cut(s) 15, 355
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 2 cut(s) 335, 372
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 1 cut(s) 158
AxyI CCTNAGG 1 cut(s) 162
BbvI GCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 300
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 2 cut(s) 17, 357
BciVI GTATCC 1 cut(s) 340
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 198
BfuI GTATCC 1 cut(s) 340
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 17, 357
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmrFI CCNGG 2 cut(s) 17, 357
BmsI GCATC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 355
Bse21I CCTNAGG 1 cut(s) 162
BseBI CCWGG 2 cut(s) 17, 357
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 153
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 1 cut(s) 77
BsnI GGCC 1 cut(s) 77
BspACI CCGC 1 cut(s) 225
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 355
Bst2UI CCWGG 2 cut(s) 17, 357
Bst4CI ACNGT 2 cut(s) 56, 199
Bst6I CTCTTC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 328
BstNI CCWGG 2 cut(s) 17, 357
BstSCI CCNGG 2 cut(s) 15, 355
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 209
Bsu36I CCTNAGG 1 cut(s) 162
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 277
CviAII CATG 1 cut(s) 260
CviJI RGCY 4 cut(s) 63, 77, 175, 240
CviKI_1 RGCY 4 cut(s) 63, 77, 175, 240
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 1 cut(s) 162
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 158
Eco81I CCTNAGG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 15, 355
FaeI CATG 1 cut(s) 263
FaiI YATR 5 cut(s) 124, 149, 195, 249, 261
FatI CATG 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 223
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 223
FspBI CTAG 1 cut(s) 299
GluI GCNGC 1 cut(s) 223
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 1 cut(s) 263
HinfI GANTC 1 cut(s) 232
HphI GGTGA 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 161, 344
Hpy99I CGWCG 2 cut(s) 83, 114
HpyAV CCTTC 2 cut(s) 23, 278
HpyCH4III ACNGT 2 cut(s) 56, 199
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 193, 257
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 1 cut(s) 263
LpnPI CCDG 9 cut(s) 2, 29, 59, 171, 174, 226, 329, 342, 369
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 35
MaeI CTAG 1 cut(s) 299
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 56
MboII GAAGA 2 cut(s) 179, 215
MluCI AATT 4 cut(s) 23, 252, 335, 372
MspR9I CCNGG 2 cut(s) 17, 357
MvaI CCWGG 2 cut(s) 17, 357
NlaIII CATG 1 cut(s) 263
NmuCI GTSAC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 232
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 15, 355
PspGI CCWGG 2 cut(s) 15, 355
PspPI GGNCC 1 cut(s) 158
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SatI GCNGC 1 cut(s) 223
Sau96I GGNCC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 17, 357
SetI ASST 2 cut(s) 141, 361
SfaNI GCATC 1 cut(s) 35
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 1 cut(s) 158
Sse9I AATT 4 cut(s) 23, 252, 335, 372
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 2 cut(s) 15, 355
TaaI ACNGT 2 cut(s) 56, 199
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 112
TaqII GACCGA 1 cut(s) 84
TasI AATT 4 cut(s) 23, 252, 335, 372
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 232
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 56
Tth111I GACNNNGTC 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 2 cut(s) 335, 372
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.