Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004657

Physical Location & Seq

Genomic Coordinates Forward (+)

10441976 .. 10446395

Gene Structure 4420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G176300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGAAGGATATTTGTGGTAGAGCTGGAGGGAAGGTGTTACAAATGCAAGTTCTGCAAGACCCATTTGGCCCTCGTCTCCGACTGTGTCTCTCGGTCTTTTCATTGCCGCCGGGGAAAAGCATACCTCTTCAATAATGCGGTGAATACCACTATTGGAGCATTAGAGGAGAGGTTGATGCTCTCAGGTCTCCATACTGTTGCGGATATATTTTGCTGCTGTTGTGGACAAATCGTTGGCTGGAAATATGAATCGGCACATGAGAAGAGCCAGAAATACAAAGAGGGGAAGTTCGTCCTTGAGAGAGGGAGGATCGTCGATGAAGTAGATTTTTCGACAGAGTTCTTTGTTGATTCTCGTCCTAGCATGAGTAGTGATGCTGATGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yippee-Mis18

Protein Analysis

131

Amino Acids

14.77

Weight (kDa)

6.87

Isoelectric Point (pI)

24.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53940
fragaria_vesca	FvH4_3g08780 FvH4_3g08780 FvH4_3g19470
malus_domestica	MD03G1231600.v1.1 MD05G1311500.v1.1 MD10G1290700.v1.1
prunus_persica	Prupe.4G051300_v2.0.a1 Prupe.4G176300_v2.0.a1
pyrus_communis	pycom05g28770 pycom10g24310
rosa_chinensis	RchiOBHm_Chr5g0008981 RchiOBHm_Chr5g0032731
rosa_laevigata	RLG00000031622 RLG00000033422
rosa_multiflora	Rmu_co8513721.1_g000001 Rmu_sc0027546.1_g000004
rosa_roxburghii	Rroxscaffold_1G00047370 Rroxscaffold_1G00067040 Rroxscaffold_1G00067670
rosa_rugosa	Rorug04G0440700 Rorug04G0440700
rosa_samantha	Rh5AG069600 Rh5BG066300 Rh5BG227100 Rh5CG077500 Rh5CG254900 Rh5DG065500 Rh5DG231800
rosa_wichuraiana	Rw5G006490 Rw5G020720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	109, 140, 203
AclWI	GGATC	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw26I	GTCTC	3 cut(s)	82, 94, 194
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	3 cut(s)	82, 94, 194
BfaI	CTAG	1 cut(s)	363
BisI	GCNGC	2 cut(s)	109, 217
BlsI	GCNGC	2 cut(s)	110, 218
Bme1390I	CCNGG	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	168, 367
BpmI	CTGGAG	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	112
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bse3DI	GCAATG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	112
BseMI	GCAATG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	112
BsmAI	GTCTC	3 cut(s)	82, 94, 194
BsmBI	CGTCTC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	71
Bso31I	GGTCTC	1 cut(s)	194
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	3 cut(s)	109, 140, 203
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	197
BspPI	GGATC	1 cut(s)	320
BspQI	GCTCTTC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	1 cut(s)	312
Bst4CI	ACNGT	2 cut(s)	86, 199
Bst6I	CTCTTC	2 cut(s)	134, 260
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	3 cut(s)	82, 94, 194
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	70
CviAII	CATG	2 cut(s)	260, 367
CviJI	RGCY	4 cut(s)	25, 71, 240, 270
CviKI_1	RGCY	4 cut(s)	25, 71, 240, 270
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	134, 260
EarI	CTCTTC	2 cut(s)	134, 260
Eco31I	GGTCTC	1 cut(s)	194
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	2 cut(s)	263, 370
FaiI	YATR	6 cut(s)	124, 195, 209, 249, 261, 368
FatI	CATG	2 cut(s)	259, 366
Fnu4HI	GCNGC	2 cut(s)	109, 217
Fsp4HI	GCNGC	2 cut(s)	109, 217
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	2 cut(s)	109, 217
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	2 cut(s)	263, 370
HinfI	GANTC	2 cut(s)	251, 353
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	82
Hpy8I	GTNNAC	1 cut(s)	227
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	2 cut(s)	86, 199
HpyCH4V	TGCA	2 cut(s)	48, 57
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	1 cut(s)	184
Hsp92II	CATG	2 cut(s)	263, 370
Kzo9I	GATC	1 cut(s)	312
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	5 cut(s)	11, 125, 171, 226, 284
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	2 cut(s)	168, 367
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	2 cut(s)	121, 277
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	8 cut(s)	22, 83, 137, 160, 165, 277, 299, 303
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	54
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	2 cut(s)	263, 370
PciSI	GCTCTTC	1 cut(s)	260
PfeI	GAWTC	2 cut(s)	251, 353
PflFI	GACNNNGTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	110, 218
PspPI	GGNCC	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	260
SatI	GCNGC	2 cut(s)	109, 217
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	5 cut(s)	27, 38, 129, 176, 190
SfaNI	GCATC	2 cut(s)	168, 367
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SsiI	CCGC	3 cut(s)	109, 140, 203
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	86, 199
TaqI	TCGA	2 cut(s)	318, 335
TaqII	GACCGA	1 cut(s)	84
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	251, 353
TseI	GCWGC	1 cut(s)	216
TspDTI	ATGAA	3 cut(s)	92, 264, 336
Tth111I	GACNNNGTC	1 cut(s)	86
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.